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Biochemical and Ganetical Analyses of Organized Regularly Mechanism of Gene Expression by Various Transcription Super-Complex.

Research Project

Project/Area Number 13470489
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Biological pharmacy
Research InstitutionOsaka university

Principal Investigator

OHKUMA Yoshiaki  Graduate School of Frontier Biosciences Associate professor, 大学院・生命機能研究科, 助教授 (70192515)

Co-Investigator(Kenkyū-buntansha) EKI Toshihiko  Toyohashi Univ. of Technd. Dept. Ecologinal Eng Associate professor, エコロジー工学, 助教授 (40192512)
YOKOI Masayuki  Granduate School of Frontier Boisciences Associate professor, 生命機能研究科, 助手 (00322701)
Project Period (FY) 2001 – 2002
Project Status Completed (Fiscal Year 2002)
Budget Amount *help
¥14,400,000 (Direct Cost: ¥14,400,000)
Fiscal Year 2002: ¥4,000,000 (Direct Cost: ¥4,000,000)
Fiscal Year 2001: ¥10,400,000 (Direct Cost: ¥10,400,000)
KeywordsRNA polymeraseII / Transcription Mediator Complex / General Transcription Factor / Archae bactria / TFIIE / Transcription Initiation Elongation / Zn Finger Motit / TFIIH / CTD / リン酸化 / Znフィンガー領域
Research Abstract

1. Characterization of the Mediator complex. The Mediator consists of more than 20 subunits and transmits the transcriptional regulation signals from outsaide of the cell nucleus to RNA rolymersae 11 (Pol II). We tagged three subunits independently, established HeLa cell lines expressing each tagged-subunit, and purified the complexes from nuclear extracts. As a result, one transcription super-complex with molecular mass 1-2 MDa was purified from all cell lines and showed positive effects on transriptionnal activation.
2. Analyses of the Zn finger of TFIIEα. Human general transcription factor TFIIE consists of α and β subunits, froms an α2 β2 tetramer, and functions at transcription initiation and the transition to elongation. TFIIE α possesses a Zn finger motif at the central core region and this might be important for transcription system. Moreover, it was demonstrated that the N-terminal region of TFIIEα including this motif is conserved in Archaebacteria classifies between prokaryotes and eukaryotes. We studied this region by NMR and found that this actually forms the Zn finger motif, and that region has important roles in protein-protein interactions by negative charges on its surface.
3. Studies on the transition of Pol II from initiation to elongation. By point mutations in the C-terminal helix region of TFIIEβ, the transcriptional activity with a linearized template has been lost. These mutants lost the stimulation activity of TFIIH-mediated phosphorylation of Pol II. From these results, this region might be involved in the transition. functional mechanisms are still elucive, but it is highly conceivable that the changes in interactions between TFIIE and TFIIH are involved, since the binding of p44 of TFIIH, which is essential for the transition to elongation, to those mutants became stronger than that to the wild type.

Report

(3 results)
  • 2002 Annual Research Report   Final Research Report Summary
  • 2001 Annual Research Report
  • Research Products

    (23 results)

All Other

All Publications (23 results)

  • [Publications] Watanabe, T. et al.: "The carboxy terminus of the small subunit of TFIIE regulates the transition from transcription initiation to elongation by RNA polymerase II"Mol.Cell.Biol.. 23・8. 2914-2926 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Fujita, N. et al.: "MCAF mediates MBD1-dependent transcriptional repression"Mol.Cell.Biol.. 23・8. 2834-2843 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Uchida, A. et al.: "The carboxy-terminal domain of the XPC protein plays a crucial role in nucleotide excision repair through interactions with transcription factor IIH"DNA Repair. 1・6. 449-461 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Fukumoto, Y. et al.: "Two budding yeast RAD4 homologs in fission yeast play different roles in the repair of UV-induced DNA damage"DNA Repair. 1・10. 833-845 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Yamamoto, S. et al.: "Studies of nematode TFIIE reveal a link between Ser-5 phosphorylation of RNA polymerase II and the transition from transcription initiation to elongation"Mol.Cell.Biol.. 21・1. 1-15 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Araki, M. et al.: "Centrosome protein cetrin2/caltractin is part of the xeroderma pigmentosum group C complex that initiates global genome nucleotide excision repair"J.Biol.Chem.. 276・22. 18666-18672 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] 半田 宏 編集: "転写がわかる-基本転写から発生,再生,先端医療まで"羊土社. 128 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Watanabe, T. et al.: "The carboxy terminus of the small subunit of TFIIE regulates the transition from transcription initiation to elongation by RNA polymerase II."Mol. Cell. Biol.. 23. 2914-2926 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Fujita, A. et al.: "MCAF mediates MBDI-dependent transcriptional repression."Mol. Cell. Biol.. 23. 2834-2843 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Uchida, A. et al.: "The carboxy-terminal domain of the XPG protein plays a crucial role in nucleotide excision repair through interactions with transcription factor IIH."DNA Repair. 1. 449-461 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Fukumoto, Y. et al.: "Two budding yeast RAD4 homologs in fission yeast play different roles in the repair of UV-induced DNA damage."DNA Repair. 1. 833-845 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Araki, M. et al.: "Centrosome protein cetrin2/caltractin 1 is part of the xeroderma pigmentosum group C complex that initiates global genome nucleotide excision repair."J. Biol. Chem.. 276. 18666-18672 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Yamamoto, Y. et al.: "Studies of nematode TFIIE reveal a link between ser-5 phosphorylation of RNA polymerase II and the transition from transcription inintiation to elongation."Mol. Cell. Biol. 1-15.

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] nishikawa, N. S. et al.: "E2F regulates growth-dependent transcription of genes encoding both catalytic and subunits of mouse primase."Genes to Cells. 6. 57-70 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Watanabe, T. et al.: "The carboxy terminus of the small subunit of TFIIE regulates the transition from transcription initiation to elongation by RNA polymerase II"Mol. Cell. Biol.. 23・8(発表予定). (2003)

    • Related Report
      2002 Annual Research Report
  • [Publications] Fujita, N. et al.: "MCAF mediates MBD1-dependent transcriptional repression"Mol. Cell. Biol.. 23・8(発表予定). (2003)

    • Related Report
      2002 Annual Research Report
  • [Publications] Uchida, A. et al.: "The carboxy-terminal domain of the XPC protein plays a crucial role in nucleotide excision repair through interactions with transcription factor IIH"DNA Repair. 1・6. 449-461 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Fukumoto, Y. et al.: "Two budding yeast RAD4 homologs in fission yeast play different roles in the repair of UV-induced DNA damage"DNA Repair. 1・10. 845-883 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] 大熊 芳明: "基本転写因子の形成する転写開始複合体による遺伝子発現の調節"実験医学増刊 ゲノム機能を担う核・染色体のダイナミクス-複製、修復、組換え、転写機構からエピジェネティクス、高次生命機能・医学とのかかわりまで-. 20・11. 1517-1524 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] 半田 宏 編集: "転写がわかる-基本転写から発生,再生,先端医療まで"羊土社. 128 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Yamamoto, S. et al.: "Studies of nematode TFIIE reveal a link between Ser-5 phosphorylation of RNA PolymeraseII and the transition from transcription initiation to elongation"Mol. Cell. Biol.. 21. 1-15 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Araki, M. et al.: "Centrisonne protein centrin 2/caltractin 1 is part of the xeroderma Pigmentosun group C complex that initiates global genome nucleatide excision repair"J. Biol. Chem.. 276. 18666-18672 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Uchida, A. et al.: "The Carboxy-terminal domain of the XPC protein plays a crucial role in nucleatide excision repair through interactions with transcription factor IIH"DNA Repair. (発表予定). (2002)

    • Related Report
      2001 Annual Research Report

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Published: 2001-04-01   Modified: 2016-04-21  

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