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Signal transduci ion and control of gene expression regarding glucose metabolism in Escherichia coli

Research Project

Project/Area Number 13480227
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Molecular biology
Research InstitutionNagoya University

Principal Investigator

AIBA Hiroji  Nagoya University, Graduate School of Science, Professor, 大学院・理学研究科, 教授 (20025662)

Co-Investigator(Kenkyū-buntansha) 稲田 利文  名古屋大学, 大学院・理学研究科, 助手 (40242812)
Project Period (FY) 2001 – 2003
Project Status Completed (Fiscal Year 2003)
Budget Amount *help
¥14,800,000 (Direct Cost: ¥14,800,000)
Fiscal Year 2003: ¥3,700,000 (Direct Cost: ¥3,700,000)
Fiscal Year 2002: ¥3,600,000 (Direct Cost: ¥3,600,000)
Fiscal Year 2001: ¥7,500,000 (Direct Cost: ¥7,500,000)
Keywordsglucose induction / glycolysis / glucose transporter / mRNA degradation / tmRNA / trans-translation / mRNA quality control / ribosome stalling / グルコース応答 / His-リン酸リレー系 / PTS / RNase E / cpsオペロン / Mlc / RNaseE / mRNAの分解
Research Abstract

We have been studying the regulatory networks linked to central metabolism and dynamic aspects of the cellular response in Escherichia coli and yeast. Major projects are : 1) regulatory roles of PTS and glycolysis ; 2) new roles of tmRNA-mediated trans-translation ; 3) quality control of proteins and mRNA. The following are recent findings.
1)Discoveiy of a mechanism for membrane sequestration of Mic by PtsG
2)Discovery of a new mechanism regarding the control of mRNA stability by glycolytic flux.
3)Discovery of Lad mRNA as a natural target for tmRNA.
4)Discovery of mRNA quality control by tmRNA
5)Discovery of mRNA cleavage induced by ribosome stalling
Regulation of Mlc by PtsG has provided a good system to study how transporters modulate the activity of regulatory proteins. Studies on the regulation of mRNA stability in response to metabolic status have just begun. The mRNA cleavage in response to ribosome stalling is providing an opportunity to study new roles of translation machinery.

Report

(4 results)
  • 2003 Annual Research Report   Final Research Report Summary
  • 2002 Annual Research Report
  • 2001 Annual Research Report
  • Research Products

    (32 results)

All Other

All Publications (32 results)

  • [Publications] Kimata, K., Tanaka, Y, Inada, T., Aiba, H.: "Expression of the glucose transporter gene, ptsG, is regulated at the step of mRNA degradation in response to glycolytic flux in Escherichia coli."EMBO J.. 20. 3587-3595 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Ueda, K., Yamamoto, Y, Ogawa, K., Abo, T., Inokuchi, Aiba, H.: "Bacterial SsrA system plays a role in coping with unwanted translational readthrough."Genes Cells. 7. 509-519 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Abo, T., Ueda, K., Sunohara, T, Ogawa, K., Aiba, H.: "SsrA-mediated protein tagging in the presence of miscoding drugs and its physiological role in Escherichia coli."Genes Cells. 7. 629-638 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Sunohara, T., Abo, T., Inada, T., Aiba, H.: "The C-terminal amino acid sequence of nascent peptide is a major determinant of SsrA tagging at all three stop codons."RNA. 8. 1416-1427 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Yamamoto, Y., Sunohara, T., Jojima, K., Inada, T., Aiba, H.: "SsrA-mediated trans-translation plays a role in mRNA quality control by facilitating degradation of truncated mRNAs."RNA. 9. 408-418 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Morita, T., El-Kazzaz, W., Tanaka, Y., Inada, T., Aiba, H.: "Accumulation of Glucose-6-phosphate or Fructose-6-phosphate Is responsible for Destabilization of Glucose Transporter mRNA in Escherichia coli."J.Biol.Chem.. 278. 15608-15614 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] El-Kazzaz, W., Morita, T., Tanaka, Y, Inada, T., Aiba, H.: "Metabolic block at early stages of glycolytic pathway activates the Rcs phosphorelay system via increased synthesis of dTDP-glucose in Escherichia coli."Mol.Microbiol.. 51. 1117-1128 (2004)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Sunohara, T., Jojima, K., Yamamoto, Y., Inada, T., Aiba, H.: "Nascent peptide-mediated ribosome stalling at a stop codon induces mRNA cleavage resulting in nonstop mRNA that is recognized by tmRNA."RNA. 10. 378-386 (2004)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Sunohara, T., Jojima, K., Tagami, H., Inada, T., Aiba, H.: "Ribosome stalling during translation elongation induces cleavage of mRNA being translated in Escherichia coli."J.Biol.Chem.. 279. 15368-15375 (2004)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Tanaka, Y., Itoh, F., Kimata, K., Aiba, H.: "Membrane localization itself but not binding to IICBGlc is directly responsible for the inactivation of the global repressor Mlc in Escherichia coli."Mol.Microbiol.. (in press). (2004)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Kimata, K., Tanaka, Y, Inada, T., Aiba, H.: "Expression of the glucose transporter gene, ptsG, is regulated at the step of mRNA degradation in response to glycoly tic flux in Escherichia coli."EMBO J.. 20. 3587-3595 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Ueda, K., Yamamoto, Y., Ogawa, K., Abo, T., Inokuchi, Aiba, H.: "Bacterial SsrA system plays a role in coping with unwanted translational readthrough."Genes Cells. 7. 509-519 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Abo, T., Ueda, K., Sunohara, T, Ogawa, K., Aiba, H.: "SsrA-mediated protein tagging in the presence of miscoding drugs and its physiological role in Escherichia coli."Genes Cells. 7. 629-638 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Sunohara, T., Abo, T., Inada, T., Aiba, H.: "The C-terminal amino acid sequence of nascent peptide is a major determinant of SsrA tagging at all three stop codons."RNA. 8. 1416-1427 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Yamamoto, Y., Sunohara, T., Jojima, K., Inada, T., Aiba, H.: "SsrA-mediated trans-translation plays a role in mRNA quality control by facilitating degradation of truncated mRNAs."RNA. 9. 408-418 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Morita, T., El-Kazzaz, W., Tanaka, Y., Inada, T., Aiba, H.: "Accumulation of Glucose-6-phosphate, or Fructose-6-phosphate Is Responsible for Destabilization of Glucose Transporter mRNA in Escherichia coli."J.Biol.Chem.. 278. 15608-15614 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] El-Kazzaz, W., Morita, T., Tanaka, Y., Inada, T., Aiba, H.: "Metabolic block at early stages of glycolytic pathway activates the Rcs phosphorelay system via increased synthesis of dTDP-glucose in Escherichia coli."Mol.Microbiol.. 51. 1117-1128 (2004)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Sunohara, T., Jojima, K., Yamamoto, Y., Inada, T., Aiba, H.: "Nascent peptide-mediated ribosome stalling at a stop codon induces mRNA cleavage resulting in nonstop mRNA that is recognized by tmRNA."RNA. 10. 378-386 (2004)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Sunohara, T., Jojima, K., Tagami, H., Inada, T., Aiba, H.: "Ribosome stalling during translation elongation' induces cleavage of mRNA being translated in Escherichia coli."J.Biol.Chem.. 279. 15368-15375 (2004)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Tanaka, Y., Itoh, F., Kimata, K., Aiba, H.: "Membrane localization itself but not binding to ILCBGlc is directly responsible for the inactivation of the global repressor Mlc in Escherichia coil."Mol.Microbiol.. (in press). (2004)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Yamamoto, Y., Sunohara, T., Jojima, K., Inada, T., Aiba, H.: "SsrA-mediated trans-translation plays a role in mRNA quality control by facilitating degradation of truncated mRNAs"RNA. 9. 408-418 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Morita, T., El-Kazzaz, W., Tanaka, Y., Inada, T., Aiba, H.: "Accumulation of Glucose-6-phosphate or Fructose-6-phosphate Is Responsible for Destabilization of Glucose Transporter mRNA in Escherichia coli"J.Biol.Chem.. 278. 15608-15614 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] El-Kazzaz, W., Morita, T., Tagami, H., Inada, T., Aiba, H.: "Metabolic block at early stages of glycolytic pathway activates the Rcs phosphorelay system via increased synthesis of dTDP-glucose in Escherichia coli"Mol.Microbiol.. 51. 1117-1128 (2004)

    • Related Report
      2003 Annual Research Report
  • [Publications] Sunohara, T., Jojima, K., Yamamoto, Y., Inada, T., Aiba, H.: "Nascent peptide-mediated ribosome stalling at a stop codon induces mRNA cleavage resulting in nonstop mRNA that is recognized by tmRNA"RNA. 10. 378-386 (2004)

    • Related Report
      2003 Annual Research Report
  • [Publications] Sunohara, T., Jojima K., Tagami, H., Inada, T., Aiba, H.: "Ribosome stalling during translation elongation induces cleavage of mRNA being translated in Escherichia coli"J.Biol.Chem.. (in press). (2004)

    • Related Report
      2003 Annual Research Report
  • [Publications] Ueda, K., Yamamoto, Y., Ogawa, K., Abo, T., Inokuchi, Aiba, H.: "Bacterial SsrA system plays a role in coping with unwanted translational readthrough"Genes to Cells. 7. 509-519 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Abo, Y., Ueda, K., Sunohara, T., Ogawa, K., Aiba, H.: "SsrA-mediated protein tagging in the presence of miscoding drugs and its physiological role in Escherichia coli"Genes to Cells. 7. 629-638 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Sunohara, T., Abo, T., Inada, T., Aiba, H.: "The C-terminal amino acid sequence of nascent peptide is a major determinant of SsrA tagging at all three stop codons"RNA. 8. 1416-1427 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Yamamoto, Y., Sunohara, T., Jojima, K., Inada, T., Aiba, H.: "SsrA-mediated trans-translation plays a role in mRNA quality control by facilitating degradation of truncated mRNAs"RNA. 9(in press). (2003)

    • Related Report
      2002 Annual Research Report
  • [Publications] Morita, T., El-Kazzaz, W., Tanaka, Y., Inada, T., Aiba, H.: "Accumulation of Glucose-6-phosphate or Fructose-6-phosphate Is Responsible for Destabilization of Glucose Transporter mRNA in Escherichia coli"J. Biol. Chem.. (in press). (2003)

    • Related Report
      2002 Annual Research Report
  • [Publications] Kimata, K., Tanaka, Y, Inada, T., Aiba, H.: "Expression of the glucose transporter gene,ptsG,is regulated at the step of mRNA degradation in response to glycolytic flux in Escherichia coli"EMBO J.. 20. 3587-3595 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Ueda, K., Yamamoto, Y., Ogawa, K., Abo, T., Inokuchi, H., Aiba, H.: "Bacterial SsrA system plays a role in coping with unwanted translational readthrough caused by a suppressor tRNA"Genes to cells. (in press). (2002)

    • Related Report
      2001 Annual Research Report

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Published: 2001-04-01   Modified: 2016-04-21  

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