• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

Applications of combinatorial designs to information transmission and DNA library screening

Research Project

Project/Area Number 13554002
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section展開研究
Research Field General mathematics (including Probability theory/Statistical mathematics)
Research InstitutionKeio University

Principal Investigator

JIMBO Masakazu  Keio University, Science and Technology, Professor, 理工学部, 教授 (50103049)

Co-Investigator(Kenkyū-buntansha) FUJI-HARA Ryoh  Tsukuba University, Dept. Socio Eco. Plann., Professor, 社会工学系, 教授 (30165443)
ODA Yoshiaki  Keio University, Science and Technology, Lecturer, 理工学部, 講師 (90325043)
OTA Katsuhiro  Keio University, Science and Technology, Professor, 理工学部, 教授 (40213722)
MISHIMA Miwako  Gifu University, Media Center, Associate Professor, 総合情報メディアセンター, 助教授 (00283284)
KURIKI Shinji  Osaka Pref. University, Dept. Math. Science, Associate Prof., 工学部, 助教授 (00167389)
榎本 彦衛  慶應義塾大学, 理工学部, 教授 (00011669)
Project Period (FY) 2001 – 2003
Project Status Completed (Fiscal Year 2003)
Budget Amount *help
¥9,500,000 (Direct Cost: ¥9,500,000)
Fiscal Year 2003: ¥2,300,000 (Direct Cost: ¥2,300,000)
Fiscal Year 2002: ¥2,600,000 (Direct Cost: ¥2,600,000)
Fiscal Year 2001: ¥4,600,000 (Direct Cost: ¥4,600,000)
KeywordsCombinatorial designs / DNA library screening / pooling experiment / Erasure resilient code / RAID / cluttered ordering / DNA Library screening / grid design / wrapped ρ-labelling / Quorum system / pooling design / Combinatiorial designs / wrappedρ-labelling
Research Abstract

In this research project, we studied emerging applications of combinatorial designs. The topics treated in this project are applications to DNA library screening, RAID (redundant array of independent disks), optical orthogonal codes, frequency hopping, (t, m, s)-net, and so on. Especially, we found remarkable development in the field of DNA library screening and RAID.
(1) Constructions of pooling designs for DNA library screening and its positive detecting algorithms by Bayesian network : In DNA library screening, it is often required to detect clones with positive response for some test among a huge amount of clones. In order to reduce the number of test, pooling experiment is adapted. In this research, we developed the method to construct 2-consecutive positive detectable matrices to detect consecutive positives among linearly ordered clones. Moreover an efficient algorithm to detect positives are proposed which is based on Bayesian network and is related to low density parity check codes (LDPC).
(2) Cluttered ordering and erasure resilient codes for RAID : In RAID system, it is pointed out that the order of writing data to RAIDs is important to raise the speed and to reduce the number of check disks to be renewed. In this research, we found efficient cluttered ordering for 2-dimensional parity system of RAIDs by utilizing wrapped rho-labelling. And we obtained constructions of erasure resilient codes generated by the affine spaces.

Report

(4 results)
  • 2003 Annual Research Report   Final Research Report Summary
  • 2002 Annual Research Report
  • 2001 Annual Research Report
  • Research Products

    (35 results)

All Other

All Publications (35 results)

  • [Publications] M.Mueller, M.Jimbo: "Erasure-Resilient Codes from Affine Spaces"Discrete Applied Mathematics. (印刷中). (2004)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] K.Ozawa, S.Mejza, M.Jimbo, I.Mejza, S.Kuriki: "Incomplete split-plot designs generated by some resolvable balanced designs"Statistics and Probability Letters. (印刷中). (2004)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] M.Mueller, M.Jimbo: "Concecutive positive detecable matrices and group testing for consecutive positives"Discrete Math.. (印刷中). (2004)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Y.Mutoh, M.Jimbo, H.L.Fu: "A resolvable r×c grid-block packing and its application to DNA library screening"Taiwan J.Math.. (印刷中). (2004)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] H.-L.Fu, F.Hwang, M.Jimbo, Y.Mutoh, C.L.Shiue: "Decomposing Complete Graphs into K_r xK_cs"J.Statist.Plan.Inference. Vol.119. 225-236 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Y.Chang, R.Fuji-Hata, Y.Miao: "Combinatorial Constructions of Optimal Optical Orthogonal Codes with Weight 4"IEEE Information Theory. Vol.49,No.5. 1283-1292 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] 間瀬茂, 神保雅一, 鎌倉稔成, 金藤浩司: "工学のためのデータサイエンス入門"数理工学社. 247 (2004)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] M.Mueller, M.Jimbo: "Erasure-Resilient Codes from Affine Spaces"Discrete Applied Mathematics. (to appear). (2004)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] K.Ozawa, S.Mejza, M.Jimbo, I.Mejza, S.Kuriki: "Incomplete split-plot designs generated by some resolvable balanced designs"Statistics and Probability Letters. (to appear). (2004)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] M.Mueller, M.Jimbo: "Concecutive positive detecable matrices and group testing for consecutive positives"Discrete Math.. (to aapear). (2004)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Y.Mutoh, M.Jimbo, H.L.Fu: "A resolvable r×c grid-block packing and its application to DNA library screening"Taiwan J.Math.. (to appear). (2004)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] H.-L.Fu, F.Hwang, M.Jimbo, Y.Mutoh, C.L.Shiue: "Decomposing Complete Graphs into K_r xK_<cS>"J.Statist.Plan.Inference. (to appear). (2004)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Y.Chang, R.Fuji-Hara, Y.Miao: "Combinatorial Constructions of Optimal Optical Orthogonal Codes with Weight 4"IEEE Information Theory. Vol.49,No.5. 1283-1292 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] S.Mase, M.Jimbo, M.Kamakura, K.Kanefuji: "Suri Kogakusha"Kogaku no Tameno Data Science Nyumon (in Japanese). (2004)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] M.Mueller, M.Jimbo: "Erasure-Resilient Codes from Affine Spaces"Discrete Applied Mathematics. (印刷中). (2004)

    • Related Report
      2003 Annual Research Report
  • [Publications] K.Ozawa, S.Mejza, M.Jimbo, I.Mejza, S.Kuriki: "Incomplete split-plot designs generated by some resolvable balanced designs"Statistics and Probability Letters. (印刷中). (2004)

    • Related Report
      2003 Annual Research Report
  • [Publications] M.Mueller, M.Jimbo: "Concecutive positive detecable matrices and group testing for consecutive positives"Discrete Math.. (印刷中). (2004)

    • Related Report
      2003 Annual Research Report
  • [Publications] Y.Mutoh, M.Jimbo, H.L.Fu: "A resolvable r×c grid-block packing and its application to DNA library screening"Taiwan J.Math.. (印刷中). (2004)

    • Related Report
      2003 Annual Research Report
  • [Publications] H.-L.Fu, F.Hwang, M.Jimbo, Y.Mutoh, C.L.Shiue: "Decomposing Complete Graphs into K_r xK_cs"J.Statist.Plan.Inference. Vol.119. 225-236 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Y.Chang, R.Fuji-Hara, Y.Miao: "Combinatorial Constructions of Optimal Optical Orthogonal Codes with Weight 4"IEEE Information Theory. Vol.49, No.5. 1283-1292 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] 間瀬茂, 神保雅一, 鎌倉稔成, 金藤浩司: "工学のためのデータサイエンス入門"数理工学社. 247 (2004)

    • Related Report
      2003 Annual Research Report
  • [Publications] Y.Mutoh, T.Morihara, H.-L.Fu, M.Jimbo: "The exisitence of a 2x4 grid design and its application to DNA library screening"SIAM J. Discrete Math.. 16号. 173-178 (2003)

    • Related Report
      2002 Annual Research Report
  • [Publications] H-L.Fu, F.Hwang, M.Jimbo, Y.Mutoh, C.L.Shiue: "Decomposing complete graphs into K_r x K_cS"J. Statist. Plann. Inference. (印刷中). (2003)

    • Related Report
      2002 Annual Research Report
  • [Publications] T.Adachi, M.Jimbo, S.Kageyama: "Combinatorial structure of group divisible designs without α-resolution classes in each group"Discrete Math.. 265号. 1-11 (2003)

    • Related Report
      2002 Annual Research Report
  • [Publications] K.Ozawa, M.Jimbo, S.Kageyama, S.Mejza: "Optimality and efficiency of incomplete split-block designs"Metrika. 56. 1-18 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] R.Fuji-Hara, S.Kuriki, Y.Miao, S.Shinohara: "Balanced nested designs and balanced n-ary designs"Journal of Statistical Planning and Inference. 106. 57-67 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] R.Fuji-Hara, Y.Miao: "Secret Sharing Schemes with Certain Access Structures"27th Australasian Conference on Combinatorial Mathematics and Combinatorial Computing, The University of Newcastle. (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] 神保雅一, 北田修一, 田中昌一, 宮川雅巳, 三輪哲久: "データサンプリング"共立出版. 248 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Y.Mutoh, T.Morihara, H.-L.Fu, M.Jimbo: "The exisitence of a 2x4 grid design and its application to DNA library screening"SIAM J.Discrete Math.. (採択決定).

    • Related Report
      2001 Annual Research Report
  • [Publications] T.Adachi, M.Jimbo, S.Kageyarna: "Combinatorial structure of group divisible designs without α-resolution classes in each group"Discrete Math.. (採択決定).

    • Related Report
      2001 Annual Research Report
  • [Publications] R.Fuji-Hara, Y.Miao, J.Yin: "Optimal (9v, 4, 1) optical orthogonal codes"SIAM J.Discrete Math.. 14. 256-266 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] R.Fuji-Hara, Y.Miao, J.Yin: "Directed B(K, 1;v) with K={4,5}and {4,6} related to Deletion/Insertion-correcting codes"J.Combin. Designs. 9. 147-156 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] M.Jimbo, S.Kageyama: "Discrete structure of group divisible design with r=λ+1"ICA Bulletin. 33. (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] K.Noda, Q-G.Wu, K.Shimizu: "Γ-minimaxity of a generalized Bayes unbiased estimator in a multivariate linear model"Statistics & Decisions. (採択決定).

    • Related Report
      2001 Annual Research Report
  • [Publications] 神保雅一, 北田修一, 田中昌一, 宮川雅巳, 三輪哲久: "データサンプリング"共立出版. 248 (2002)

    • Related Report
      2001 Annual Research Report

URL: 

Published: 2001-04-01   Modified: 2016-04-21  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi