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Establishing a database of MR microscopic images of human embryos and an educational system for human embryology

Research Project

Project/Area Number 13557001
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section展開研究
Research Field General anatomy (including Histology/Embryology)
Research InstitutionKyoto University

Principal Investigator

SHIOTA Kohei  Kyoto Univ, Grad Sch of Medicine, Professor, 医学研究科, 教授 (80109529)

Co-Investigator(Kenkyū-buntansha) MIZUTA Shinobu  Kyoto Univ, Academic Center for Computing and Media Studies, Professor, 学術情報メディアセンター, 助手 (40314265)
MINO Michihiko  Professor, Academic Center for Computing and Media Studies, Assistant Professor, 学術情報メディアセンター, 教授 (70166099)
MATSUDA Tetsuya  Kyoto Univ, Grad Sch of Medicine, Professor, 情報学研究科, 教授 (00209561)
KOSE Katsumi  Kose Univ of Tsukuba, Institute of Applied Physics, Professor, 物理工学系, 教授 (60186690)
TOGASHI Kaori  Kyoto Univ, Grad Sch of Medicine, Professor, 医学研究科, 教授 (90135484)
中津 智子  京都大学, 医学研究科, 助手 (60335271)
Project Period (FY) 2001 – 2003
Project Status Completed (Fiscal Year 2003)
Budget Amount *help
¥13,600,000 (Direct Cost: ¥13,600,000)
Fiscal Year 2003: ¥4,000,000 (Direct Cost: ¥4,000,000)
Fiscal Year 2002: ¥3,800,000 (Direct Cost: ¥3,800,000)
Fiscal Year 2001: ¥5,800,000 (Direct Cost: ¥5,800,000)
KeywordsHuman embryo / 3D image / Human fetus / Database / MR microscope / Embryology / MR顕微鏡 / 器官発生 / 画像データベース
Research Abstract

1) Three-dimensional (3D) MR microscope images of staged human embryos (Kyoto Collection of Human Embryos) were acquired using an MR microscope with a 1.OT permanent magnet T1 weighted 3D spin-echo imaging sequences,(TR=l00ms, TE =8-12ms, 128X128X128 image voxels) were used and 4-16 signals were accumulated to improve the SNR of the images. The spatial resolutions of 50-200 micron cube were obtained within 8 hours, which enabled to observe detailed external and internal structures of human embryos. To facilitate imaging of a large number of human embryos (over 4,000 cases), we developed a four-cal parallel MR microscope (super-parallel MR microscope) with a 234T/40cm superconducting magnet to achieve higher spatial resolutions. We aim at establishing a database of 3D MR images of 4,000 embryos within the next few years.
2) Based on MR microscopic images, we developed a computer graphic (CG) animaltion and a VRML system for constructing educational softwares on human prenatal development for biomedical education. We established a method to automatically extract the MR image of specific organs such as the brain, heart, and liver.
3) We made 3D models and movie demonstration systems of human development for embryological education. So far, tentative educational programs have been made for the development of the body, craniofacial structures, limbs, heart and great vessels, digestive tract, and central nervous system. The method developed is applicable to various fields in medical education.

Report

(4 results)
  • 2003 Annual Research Report   Final Research Report Summary
  • 2002 Annual Research Report
  • 2001 Annual Research Report

Research Products

(25 results)

All Other

All Publications

  • [Publications] 中津智子, 他: "MRマイクロスコープによるヒト胚子撮像とその三次元コンピュータグラフィックスモデル"解剖学雑誌. 76・1. 78 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] 水田 忍, 他: "発生学教育のためのヒト三次元モデル系列の構築と応用"信学技報. 91. 55-62 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Mizuta S, et al.: "Construction and application of 3D model sequuence to illustrate the development of human embryos."Proc. SPIE/Medical Imaging. 4681. 732-741 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Shiota K., et al.: "3D MR microscopy of staged human embryos : The Kyoto Human Embryo 3D Visualization Project"Birth Defects Research A. 67・5. 352 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Kose K., et al.: "Super-parallel MR microscope"Magnetic Resonance Medicine. 50・1. 183-189 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Kose K., et al.: "Three-dimensional snow images by MR microscopy"Magnetic Resonance Imaging. 21・3-4. 351-354 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Mizuta S, et al.: "Construction of 3D model sequence of Hum an Embryo and its application for Embryology"Technical Report of IEICE. 91. 55-62 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Mizuta S, et al.: "Construction and application of 3D model sequence to illustrate the development of human embryos"Proc. SPIE/Medical Imaging. 4681. 732-741 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Shiota K, et al.: "3D MR microscopy of staged human embryos: The Kyoto Human Embryo 3D Visualization Project"Birth Defects ResearchA. 67(5). 352 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Kose K, et al.: "Super-parallel MR microscope"Magnetic Resonance Medicine. 50(1). 183-189 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Kose K, et al.: "Three-dimensional snow images by MR microscopy"Magnetic Resonance Imaging. 21(3-4). 351-354 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Shiota, K., et al.: "3D MR microscopy of staged human embryos : The Kyoto Human Embryo 3D Visualization Project"Birth Defects Research A. 67・5. 352 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Saitsu, H., et al.: "Spatial and temporal expression of folate-binding protein 1 (Fbp1) is closely associated with anterior neural tube closure in mice"Developmental Dynamics. 226・1. 112-117 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Komatsu, S., et al.: "A quantitative study of the facial nerve in mice prenatally exposed to ethanol"Congenital Anomalies. 43・1. 41-45 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Kose, K., et al.: "Super-parallel MR microscope"Magnetic Resonance Medicine. 50・1. 183-189 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Kose, K., et al.: "Three-dimensional snow images by MR microscopy"Magnetic Resonance Imaging. 21・3-4. 351-354 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Shiota K, et al.: "3D MR microscopy of staged human embryos : The Kyoto Human Embryo 3D Visualization Project"Teratology. in press. (2003)

    • Related Report
      2002 Annual Research Report
  • [Publications] Kose K, et al.: "3D MR microscopy of a large human embryo collection (Kyoto Collection)"国際磁気共鳴学会抄録集. in press. (2003)

    • Related Report
      2002 Annual Research Report
  • [Publications] Kose K, et al.: "MR microscopy of articular cartilage at 1.5T : orientation and site dependence of laminar structures"Skeletal Radiology. 31. 505-510 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Mizuta S, et al.: "Construction and application of 3D model sequence to illustrate the development of human embryos"Proc. SPIE/Medical Imaging. 4681. 732-741 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Ikenouchi J, et al.: "Embryonic hydromyelia : Cystic dilatation of the lumbosacral neural tube in human embryos"Acta Neuropathologica. 103. 248-254 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] 中津智子 他: "MRマイクロスコープによるヒト胚子撮像とその三次元コンピュータグラフィックスモデル"解剖学雑誌. 76・1. 78 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] 水田 忍 他: "発生学教育のためのヒト三次元モデル系列の構築と応用"信学技報. 91. 55-62 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Nakatsu, T.et al.: "3-D modeling of human prenatal development using MR imaging"Congenital Anomalies. (in press). (2002)

    • Related Report
      2001 Annual Research Report
  • [Publications] Haishi, T.et al.: "Development of a 1.0T MR microscope using a Nd-Fe-B permanent magnet"Magnetic Resonance Imaging. 19. 875-880 (2001)

    • Related Report
      2001 Annual Research Report

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Published: 2001-03-31   Modified: 2016-04-21  

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