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Construction of Environmental Biremediation Enzymes Whose Catalysis is Regulated by Light and Molecular Switches

Research Project

Project/Area Number 13558069
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section展開研究
Research Field 環境保全
Research InstitutionTohoku University

Principal Investigator

SHIMIZU Toru  Tohoku University, Institute of Multidisciplinary Research for Advanced Materials, Research Associate, 多元物質科学研究所, 教授 (40118956)

Co-Investigator(Kenkyū-buntansha) KUROKAWA Hirofumi  Tohoku University, Institute of Multidisciplinary Research for Advanced Materials, Research Associate, 多元物質科学研究所, 助手 (80359546)
IGARASHI Jotaro  Tohoku University, Institute of Multidisciplinary Research for Advanced Materials, Research Associate, 多元物質科学研究所, 助手 (80375162)
佐上 郁子  東北大学, 多元物質科学研究所, 講師 (10143033)
松井 敏高  東北大学, 多元物質科学研究所, 助手 (90323120)
Project Period (FY) 2001 – 2004
Project Status Completed (Fiscal Year 2004)
Budget Amount *help
¥12,700,000 (Direct Cost: ¥12,700,000)
Fiscal Year 2004: ¥2,600,000 (Direct Cost: ¥2,600,000)
Fiscal Year 2003: ¥3,300,000 (Direct Cost: ¥3,300,000)
Fiscal Year 2002: ¥3,300,000 (Direct Cost: ¥3,300,000)
Fiscal Year 2001: ¥3,500,000 (Direct Cost: ¥3,500,000)
KeywordsMolecular switch / Sensor enzyme / Heme sensor / cAMP / Protein microarray / Protein-protein interaction / redox states / Signal transduction / 蛋白-蛋白相互作用 / シグナル / シトクロムP450 / 一酸化窒素 / 環境ホルモン / 電子移動 / キメラ / 遺伝子工学 / 薬物代謝 / チトクロムP450
Research Abstract

Cytochrome P450s activate carcinogenetic activities and toxicities of various environmental chemicals including benzpyrene, aflatoxin, haloethanes. However, cytochrome P450s are also involved in metabolism and degradation of various environmental chemicals. Therefore, it is possible that we can construct efficient and useful environmental bioremediation enzymes if the degradation properties of cytochrome P450s can be used. A physiologically important gas, nitric oxide (NO), is synthesized by nitric oxide synthase whose active site structure is the sameas those of cytochrome P450s. On the other hand, there are many sensor enzymes and sensor proteins, where electron introduction, light illumination, bindings of calcium ion, CO, NO, molecule oxygen and various carcinogens induced certain protein conformational changes. The changes became signals that transmit to catalytic domain and switch the catalysis on/off. In the present study, we examined electron transfer process and protein-protein interactions of a calcium sensor protein, neuronal NO synthase. Then, we constructed chimeric enzymes composed of the calcium sensor domain of NO synthase and the have-bound active site of cytochrome P450. We examined efficiencies of electron transfer and catalysis of the generated calcium sensor chimeric enzymes with the an of a novel molecular switching enzyme. It was found that the chimeric enzyme functions as a calcium sensor enzyme. Furthermore, we examined structure and function relationships of a new redox sensor enzyme, Ec DOS. It was found that Ec DOS is also CO and NO sensor enzyme, because the catalysis was strongly inhibited by CO and NO. As the last step of this project study, we characterized potential heme-sensor enzyme, SOUL. In summary, the study provided the possibility to construct novel sensor enzymes with efficient biodegradation properties of environmental chemicals.

Report

(5 results)
  • 2004 Annual Research Report   Final Research Report Summary
  • 2003 Annual Research Report
  • 2002 Annual Research Report
  • 2001 Annual Research Report
  • Research Products

    (23 results)

All 2004 2002 2001 Other

All Journal Article (12 results) Publications (11 results)

  • [Journal Article] SOUL in Mouse Eyes Is a New Hexameric Heme-binding Protein2004

    • Author(s)
      E.Sato
    • Journal Title

      Biochemistry 43(44)

      Pages: 14189-14198

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] A Redox-controlled Molecular Switch Revealed by the Crystal Structure of Bacterial Heme PAS Sensor2004

    • Author(s)
      H.Kurokawa
    • Journal Title

      Journal of Biological Chemistry 279(19)

      Pages: 20186-20193

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Fluorescence Spectra of Trp53Phe and Trp110Ile Mutants of a Heme-regulated Phosphodiesterase from Escherichia coli2004

    • Author(s)
      S.Hirata
    • Journal Title

      Chemistry Letters 33(7)

      Pages: 870-871

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Critical Roles of Asp40 at the Haem Proximal Side of Haem-regulated Phosphodiesterase from Escherichia coli in Redox Potential2004

    • Author(s)
      M.Watanabe
    • Journal Title

      European Journal of Biochemistry 271

      Pages: 3937-3942

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Protein Microarray System for Detecting Protein-Protein Interactions Using an Anti-His-Tag Antibody and Fluorescence Scanning2004

    • Author(s)
      Y.Sasakura
    • Journal Title

      Analytical Chemistry 76(22)

      Pages: 6521-6527

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Catalytically Functional Flavocytochrome Chimera of P450 and NO synthase2002

    • Author(s)
      S.Fujiwara
    • Journal Title

      Journal of Inorganic Biochemistry 91(4)

      Pages: 515-526

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Characterization of a Direct Oxygen Sensor Heme Protein from E.coli2002

    • Author(s)
      Y.Sasakura
    • Journal Title

      Journal of Biologicsl Chemistry 277(26)

      Pages: 23821-23827

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Catalytically Functional Flavocytochrome Chimera of P450 and NO Synthase2002

    • Author(s)
      S.Fujiwara
    • Journal Title

      Journal of Inorganic Biochemistry 91(4)

      Pages: 515-526

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Characterization of a Direct Oxygen Sensor Heme Protein from E.coli2002

    • Author(s)
      Y.Sasakura
    • Journal Title

      Journal of Biological Chemistry 277(26)

      Pages: 23821-23827

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Control of Electron Transfer in Neuronal NO Synthase2001

    • Author(s)
      S.Daff
    • Journal Title

      Biochemical Society Transactions 29(2)

      Pages: 147-152

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Intra-subunit and Inter-subunit Electron Transfer in Neuronal NO Synthase2001

    • Author(s)
      I.Sagami
    • Journal Title

      Journal of Biological Chemistry 276(32)

      Pages: 30036-30042

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Rapid Calmodulin-dependent Interdomain Electron Transfer in NO Synthase2001

    • Author(s)
      K.Kobayashi
    • Journal Title

      Journal of Biological Chemistry 276(43)

      Pages: 39864-39871

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Publications] S.Bengea, I.Sagami, T.Shimizu: "CO Binding to the Isolated Oxygenase Domain of Neuronal Nitric Oxide Synthase : Effects of Inhibitors and Mutations at the Substrate Binding Site"J.Inorg.Biochem.. 94. 343-347 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] J.Yadav, I.Sagami, T.Shimizu: "Cyanide Binding Study of Neuronal Nitric Oxide Synthase : Effects of Inhibitors and Mutations at the Substrate Binding Site"J.Inorg.Chem.. 95. 25-33 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] H.Takahashi, Y.Sato, I.Sagami, T.Shimizu: "Critical Role of Val567 in Substrate Recognition by Neuronal Nitric Oxide Synthase for NO Formation Activity"Chemistry Letters. 32. 998-999 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] M.Sorlie, A.C.F.Gorren, T.Shimizu, B.Mayer: "Single-turnover of Nitric-oxide Synthase in the Presence of 4-Amino- tetrahydrobiopterin"J.Biol.Chem.. 278. 48602-48610 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Y.Sato, I.Sagami, T.Shimizu: "Identification of Caveolin-a-interacting Sites in Neuronal Nitric-oxide Synthase : Molecular Mechanism for Inhibition of NO Formation"J.Biol.Chem.. 279. 8827-8836 (2004)

    • Related Report
      2003 Annual Research Report
  • [Publications] T.Shimizu, I.Sagami: "Electron Transfer in Nitric Oxide Synthase"Coord. Chem. Rev.. Vol.226. 179-186 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] T.Shimizu, I.Sagami: "Interactions between the Isolated Oxygenase and Reductase Domains of Nurnonal Niric-oxide Synthase"J. Biol. Chem.. Vol.277. 16888-16894 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] T.Shimizu, I.Sagami: "Catalytically Functional Flavocytochrome Chimeras of P450 BM3 and Nitric Oxide Synthase"J. Inorg. Biochem.. Vol.91. 515-526 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] T.Shimizu, I.Sagami: "Control of Electron Transfer in Neuronal NO Synthase"Biochem. Soc. Trans.. Vol. 29. 147-152 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] T.Shimizu, I.Sagami: "The Electron Transfer Reaction of Niric-oxide Synthase"Coord. Chem. Rev.. Vol. 226. 179-186 (2002)

    • Related Report
      2001 Annual Research Report
  • [Publications] T.Shimizu, I.Sagami: "NO合成酵素における電子伝達のメカニズム"生物物理. 41巻. 137-141 (2001)

    • Related Report
      2001 Annual Research Report

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Published: 2001-04-01   Modified: 2016-04-21  

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