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3-dimensional configuration of the electron transfer chain in photosynthesis studied by pulsed EPR

Research Project

Project/Area Number 13640412
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field 物理学一般
Research InstitutionKwansei Gakuin University

Principal Investigator

KAWAMORI Asako  Kwansei Gakuin University, School of Science and Technology, Professor, 理工学部, 教授 (40079661)

Co-Investigator(Kenkyū-buntansha) HARA Hideyuki  Bruker Biospin KK, EPR Application, Researcher, バイオスピンKK, 研究員
Project Period (FY) 2001 – 2002
Project Status Completed (Fiscal Year 2002)
Budget Amount *help
¥3,500,000 (Direct Cost: ¥3,500,000)
Fiscal Year 2002: ¥900,000 (Direct Cost: ¥900,000)
Fiscal Year 2001: ¥2,600,000 (Direct Cost: ¥2,600,000)
KeywordsPhotosystem II / ELDOR / Distance Vector / 3 Spin System / Dipolar Interaction / Chlorophyll / Quinone / Tyrosine / 光合成 / 電子伝達 / 3スピン系ELDOR / マンガン / 銅 / P680
Research Abstract

a) ELDOR of 3-spin systems to investigate the configuration of electron transfer components
So far we have obtained the distances between Tyrosines Z(Y_Z) and D(Y_D), and Q_A and Y_D in spinach photosystem II. To investigate the unknown distance between Q_A and Y_Z, pulsed ELDOR was applied to a 3-spin system Y_D^・-Y_Z^・-Q_A^-. As all the 3-spin systems could not be always trapped, simulation was carried out for assumed ratios of the three spin system and other pair of two spin systems to fit the observed time profile. The best fit distance for Q_A-Y_Z was 34 A. To confirm, ELDOR of Q_A^<->-Y_Z^・ was observed in a Y_D-less mutant of Chlamydomonas reinhardtii. A graphical method was proposed to get positions of all the electron transfer components.
b) Determination of the functional site.
When electron transfer is inhibited, a chlorophyll near by the reaction center gives an electron to P680^+ instead of the second donor Y_Z and the oxidized chlorophyll was named Chl_Z^・. However, which chlorophyll in D1 or D2 proteins act functional, has not yet determined. ELDOR for Y_D-Chl_Z provided that the distance between these radicals was 29.5 A. ELDOR of Y_D^・-Chl_Z^・-Q_A^- system and Y_Z^・-Chl_Z^・. In the Y_D-less mutant revealed the accessory chlorophyll on the D2 protein is the functional site.
c) Change in the spin configuration on four manganese site on oxidation,
The distances of the Mn-cluster in the S_0 and S_2 states, respectively, from Y_D have been shown to be 7 A different. Assuming the simple dipolar interaction the spin center of the Mn-cluster approached from S_0 to S_2 state to the Y_D site. This value seems to be too large based on the recent X-ray analysis. Taking account of spin projections on each Mn-ion, detailed simulations are being undertaken in cooperation with Bittl in Free University Berlin.

Report

(3 results)
  • 2002 Annual Research Report   Final Research Report Summary
  • 2001 Annual Research Report
  • Research Products

    (22 results)

All Other

All Publications (22 results)

  • [Publications] S.Arno, S.Yamada, A.Kawamori, J.R Shcn, N.lonnidis, V.Peirouleas: "EPR studies of manganese spin centers in the even number oxidation states of water oxidizing complex of pliotosystem II"EPR_in_the_21^<st> Century : Basics and Applications to Matereial Life and Earth Sciences (Elsevier) edited A.Kawamori et al.. 466-470 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] H.Hara, A.Kawamori, N.Katsuta: "The structural analysis of photosystem II by PELDOR of three spin system"EPR in the 21^<st> Century : Basics and Applications to Matereial Life and Earth Sciences (Elsevier) edited A.Kawamori et al.. 679-683 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] S.A.Dzuba, A.Kawamori, N.Katsuta, H.Hara, H.Mino, S.Itoh: "Spin relaxation of a spin correlated radical pair P700^+A_1^-in the PSI photosynthetic reaction center"Chem.Phys.Letters. 362. 307-313 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] A.Kawamori, N.Katsuta, H Mino, A.Ishii, I.Minagawa, T-A Ono: "Posiotions of Q_A and Chl_Z Relative to Tyrosine Y_Z and Y_Z in Photosystem II Studied by Pulsed EPR"J.Biol.Phys.. 28. 413-426 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] A.Kawamori, N.Katscta, H.Hara: "Structural Analysis of Three-Spin System of Photosystem II by PELDOR"Appl.Magn.Reson.. 23. 557-569 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Asako Kawamori, Jun Yamauchi, Hitoshi Ohta, edited: "EPR in the 21^<st> Century : Basics and Application to Material, Life, and Earth Sciences"Elsevier Science B.V. The Netherlands. 855 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Arao, S. Yamada, A. Kawamori, J-R Shen N. Ionnidis and V. Petrouleas: "EPR studies of manganese spin centers in the even number oxidation states of water oxidizing complex of photosystem II"EPR in the 21th Century : Basics and Applications to Material, Life and Earth Sciences (Elsevier) edited A. Kawamori et al.. 466-470 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] A. Kawamori and N. Katsuta: "The structural analysis of photosystem II by PELDOR of three spin system"EPR in the 21th Century : Basics and Applications to Material, Life and Earth Sciences (Elsevier) edited A. Kawamori et al.. 679-683 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] S. A. Dzuba et al.: "Spin relaxation of a spin correlated radical pair P700^+A_1^- in the PSI photosynthetic reaction center"Chem. Phys. Letters. 362. 307-313 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] A. Kawamori et al.: "Positions of Q_A and Chl_Z Relative to Tyrosine Y_Z and Y_D in Photosystem II Studied by Pulsed EPR"J. Biological Phys.. 28. 413-426 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] A. Kawamori et al.: "Structural Analysis of Three-Spin System of Photosystem II by PELDOR"Appl. Magn. Reson.. 23. 557-569 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Asako Kawamori edited: "EPR in the 21st Century : Basics and Application to Material, Life, and Earth Sciences"Elsevier Science B.V.. (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] H.Hara, A.Kawamori, N.Katsuta: "The structure analysis of photosystem II by PELDOR of three spin system"EPR in the 21^<st> Century. 679-683 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] A.Kawamori, N.Katsuta, H.Mino, A.Ishii, J.Minagawa, T-A.Ono: "Positions of QA and Oils Relative to Tyrosine YZ and YD in Photosystem II studied by Pulsed EPR"J. Biol. Phys. 28. 413-426 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] A.Kawamori, N.Katsuta, H.Hara: "The Structural Analysis of Photosystem II by PELDOR of Three Spin Systems"Applied. Magn. Reson. (in press). (2003)

    • Related Report
      2002 Annual Research Report
  • [Publications] S.A.Dzuha, A.Kawamori, N.Katsuta, H.Hara.H.Mino, S.Itoh: "Spin relaxation of a spin correlated radical pair P700^+A_1^-in the PSI photosynthetic reaction center"Chem. Phys. Letters. 362. 307-313 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] S.Arao, S.Yamada, A.Kawamori, J-R Shen, N.Ionnidis, V.Petrouleis: "EPR studies of manganese spin centers in the even number oxidation states of water oxidizing complex of photosystem II"EPR in the 21^<st> Century. 466-470 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] M.Kim, T.Okajima, S.Kishishita, M.Yoshimura.....: "X-ray snapshots quinone cofactor biogenesis in bacterial copper amine oxidase"Nature Struc. Biol. 9. 591-596 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] A.Kawamori, J.Yamauchi, H.Ohta: "EPR in the 21^<st> Century"Elsevier Science B.V. The Netherlands. 830 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Hiroyuki Mino, Asako Kawamori: "ESR studies of the water exidizing complex in the S, and higher Solates : manganese cluster and Yz radicals"Biochimica Biophysica Acta. 1503. 112-122 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] K.Kindo, S.Ookita, Y.Sasaki, T.Matsukawa, A.Kawamori, K.Akatuta: "Magnetic Succeptibility : lity of the Non-Heme Iron in phtotosystemII"J. Physical Society of Japan. 70. 1495-1497 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] A.Kawamori, N.Katsuta, H.Mino, A.Ishii, J Minagawa, FA.Ono: "Positions of QA and Chlz Relative to Tyrusine Yz and YD in PhotosystemII studied by pulsed EPR"J.Bidogical Physics. (in press). 1-14 (2002)

    • Related Report
      2001 Annual Research Report

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Published: 2001-04-01   Modified: 2016-04-21  

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