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Development of sensor peptide based on fluorescence resonance energy transfer

Research Project

Project/Area Number 13650852
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field 生物・生体工学
Research InstitutionNational Institute of Advanced Industrial Science and Technology (AIST) (2002-2003)
Japan Advanced Institute of Science and Technology (2001)

Principal Investigator

YOKOYAMA Kenji  National Institute of Advanced Industrial Science and Technology (AIST), Research Center of Advanced Bionics, Deputy Director, バイオニクス研究センター, 副センター長 (80242121)

Project Period (FY) 2001 – 2003
Project Status Completed (Fiscal Year 2003)
Budget Amount *help
¥3,600,000 (Direct Cost: ¥3,600,000)
Fiscal Year 2003: ¥1,100,000 (Direct Cost: ¥1,100,000)
Fiscal Year 2002: ¥1,100,000 (Direct Cost: ¥1,100,000)
Fiscal Year 2001: ¥1,400,000 (Direct Cost: ¥1,400,000)
Keywordsprotein kinase A / fluorescence resonance energy transfer / phosphorylation / solid phase synthesis / fluorophore / quencher / EDANS / DABCYL / プロテインキナーゼ / dabcyl / MAPキナーゼ / フルオレセイン / ローダミン / FRET
Research Abstract

We are currently focusing on a peptide as a novel biosensor material and have investigated several sensor peptides that can be applied to analyzing intracellular signal transduction. We have designed a fluorescence resonance energy transfer based sensor peptide for analyzing protein kinase activity. For instance, we have synthesized a sensor peptide modified with EDANS and dabcyl for monitoring MAPKK activity. In this work, we synthesized 10mer and 15mer peptides, which include amino acid sequence of phosphorylated site, ArgArgAlaSerLeu, of c-AMP dependent protein kinase (PKA). Ser is phosphorylated by PKA in the cell. EDANS-modified 10mer and 15mer peptides, GLRRASLGE(EDANS)G, and GDENLRRASLGEDE(EDANS)G. were synthesized on bead. After cleavage and deprotection of peptide side chain, dabcyl group was attached at the N-terminal O-amino group. Ser-phosphorylated sensor peptides were also synthesized.
Fluorescence property of the peptides modified with EDANS and dabcyl was investigated. Energy transfer from EDANS to dabcyl, quenching by dabcyl, was reduced by phosphorylation of Ser. Peptide main chain was stretched by increase in hydrophilicity, and the distance between the fluorescence dye and quencher increased.

Report

(4 results)
  • 2003 Annual Research Report   Final Research Report Summary
  • 2002 Annual Research Report
  • 2001 Annual Research Report
  • Research Products

    (25 results)

All Other

All Publications (25 results)

  • [Publications] 横山 憲二: "蛍光センサーペプチド"Medical Science Digest. 29. 550-553 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] 横山 憲二: "プロテインチップ開発の現状"バイオベンチャー. 3. 24-27 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Kazuya Itoda, Eiichi Tamiya, Kenji Yokoyama: "Evaluation of Molecular Recognition of Peptide-Conjugated Polymer"Analytical Science. 19. 185-187 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] K Yokoyama, M Matsumoto, H Ishikawa, Y Morita, B Tamiya: "Sensor peptides based on fluorescence resonance energy transfer"Advances in Biochemical Production Technologies, ACS Symposium Series. 830. 248-258 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] K Yokoyama, T Sakai, H Ishikawa, Y Morita, E Tamiya: "Screening and design of hybrid peptide that binds with glucose oxidase"Peptide, The Wave of the Future, Proceedings of the Second International and the Seventeenth American Peptide Symposium. 202-203 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] 民谷栄一, 森田資隆, 村上裕二, 横山憲二: "バイオセンサー-新規バイオセンサー創成に向けてのチャレンジー,化学フロンティア5・生命化学のニューセントラルドグマ"化学同人. 275 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Takashi Fukumori, Yasutaka Morita, Eiichi Tamiya, Kenji Tokoyama: "Design of peptide that recognizes double stranded DNA"Analytical Science. 19. 181-183 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Kazuya Itoda, Eiichi Tamiya, Kenji Yokoyama: "Evaluation of Molecular Recognition of Peptide-Conjugated Polymer"Analytical Science. 19. 185-187 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Kenji Yokoyama, Toshifumi Sakai, Hideo Ishikawa, Yasutaka Morita, Eiichi Tamiya: "Screening and design of hybrid peptide that binds with glucose oxidase (Peptide, The Wave of the Future (edited by Michal Lebl and Richard A. Houghten))"202-203 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Kenji Yokoyama, Masayuki Matsumoto, Hideo Ishikawa, Yasutaka Morita, Eiichi Tamiya: "Sensor peptides based on fluorescence resonance energy transfer (Biological Systems Engineering (Ed. Mark Marten, Tai Hyun Park, Teruyuki Nagamune)) (ACS Symposium Series 830)"American Chemical Society. 248-258 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Shu Taira, Kenji Yokoyama: "DNA-conjugated polymers for self-assembled DNA chip fabrication"Analytical Science. 20. 267-271 (2004)

    • Related Report
      2003 Annual Research Report
  • [Publications] Shu Taira, Kenji Yokoyama: "Self-assembly DNA-conjugated polymer for detection of Single Nucleotide Polymorphism"Biotechnology and Bioengineering. 印刷中. (2004)

    • Related Report
      2003 Annual Research Report
  • [Publications] 横山 憲二: "蛍光センサーペプチド"Medical Science Digest. 29. 550-553 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] 樺山 憲二: "プロテインチップ開発の現状"バイオベンチャー. 3. 24-27 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Shu Taira, Yasutaka Morita, Eiichi Tamiya, Kenji Yokoyama: "Self-assembled DNA conjugated polymer for novel DNA chip"Analytical Science. 19. 177-179 (2003)

    • Related Report
      2002 Annual Research Report
  • [Publications] Taknshi Fukumori, Yasutaka Morita, Eiichi Tamiya, Kenji Yokoyama: "Design of peptide that recognizes double stranded DNA"Analytical Science. 19. 181-183 (2003)

    • Related Report
      2002 Annual Research Report
  • [Publications] Kazuya Itoda, Eiichi Tamiya, Kenji Yokoyama: "Evaluation of Molecular Recognition of Peptide-Conjugated Polymer"Analytical Science. 19. 185-187 (2003)

    • Related Report
      2002 Annual Research Report
  • [Publications] 微生物利用の天展開: "横山憲二, 今中忠行編"エヌティーエス. 1189 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] K Yokoyama, M Matsumoto, H Ishikawa, Y Morita, E Tamiya: "Sensor peptides bazed on fluorescence resonance energy transfer"Advances in Biochemical Production Technologies, ACS Symposium Series. (印刷中).

    • Related Report
      2001 Annual Research Report
  • [Publications] Y Morita, Y Murakami, K Yokoyama, E Tamiya: "Synthesis and analysis of peptide ligand for biosensor application using combinatorial chemistry"Advances in Biochemical Production Technologies, ACS Symposium Series. (印刷中).

    • Related Report
      2001 Annual Research Report
  • [Publications] 森田資隆, 金原健, 村上裕二, 横山憲二, 民谷栄一: "チップ技術と連携したコンビナトリアル設計法による機能分子の創成"生物工学会誌. 79. 367-370 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] K Yokoyama, T Sakai, H Ishikawa, Y Morita, E Yamiya: "Screening and design of hybrid peptide that binds with glucose oxidase"Peptide, The Wave of the Future, Proceedings of the Second International and the Seventeenth American Peptide Symposium. 202-203 (2002)

    • Related Report
      2001 Annual Research Report
  • [Publications] 横山憲二: "バイオセンサーからDNAチップまで"化学と教育. 49. 786-787 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] K Yokoyama, S Koide, Y Kayanuma: "Cyclic voltammetric simulation of electrochemically mediated enzyme reaction and elucidation of biosensor behaviors"Analytical and Bioanalytical Chemistry. 372. 248-253 (2002)

    • Related Report
      2001 Annual Research Report
  • [Publications] 民谷栄一, 森田資隆, 村上裕二, 横山憲二: "バイオセンサー-新規バイオセンサー創成に向けてのチャレンジ-,化学フロンティア5・生命科学のニューセントラルドグマ"化学同人. 275 (2002)

    • Related Report
      2001 Annual Research Report

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Published: 2001-04-01   Modified: 2016-04-21  

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