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Isolation and characterization of a novel gene for degradation of environmental pollutants from environmental genetic source

Research Project

Project/Area Number 13660078
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field 応用微生物学・応用生物化学
Research InstitutionTohoku University

Principal Investigator

NAGATA Yuji  Graduate School of Life Sciences, Associate Professor, 大学院・生命科学研究科, 助教授 (30237531)

Co-Investigator(Kenkyū-buntansha) TSUDA Masataka  Graduate School of Life Sciences, Professor, 大学院・生命科学研究科, 教授 (90172022)
Project Period (FY) 2001 – 2002
Project Status Completed (Fiscal Year 2002)
Budget Amount *help
¥3,600,000 (Direct Cost: ¥3,600,000)
Fiscal Year 2002: ¥1,000,000 (Direct Cost: ¥1,000,000)
Fiscal Year 2001: ¥2,600,000 (Direct Cost: ¥2,600,000)
KeywordsEnvironmantal DNA / Environmental pollutant / Uncultured bacteria / Dehydrochlorinase / Dehalogenase / Naphthalene / BHC / Haloalkane / 芳香族化合物酸化酵素 / ハロアルカンデハロゲナーゼ / 機能相補 / 土壌ライブラリー / 環境汚染物質川
Research Abstract

It is difficult to isolate a novel gene or enzyme for degradation of environmental pollutants by using the conventional enrichment-culture method. We directly isolated and purified long chain DNA from soil environment, and constructed soil DNA library using cosmid vector. The resultant soil DNA library was introduced into the host strain that could not grow on naphthalene because of its lack of one of genes for naphthalene assimilation. The clones which grew on naphthalene were isolated. The gene that complemented the naphthalene assimilation ability of the strain did not show homology to knwon genes for naphthalene degradation. Furthermore, we constructed strains which could not grow on BHC or haloalkanes becuse of their lack of one of genes for assimilation of BHC or haloalkanes. By using these strains, it is theoretically possible to isolate novel genes for BHC dehydrochlorinase or haloalkane dehalogenase. Introduction of the soil DNA library into these stratns are in progress.

Report

(3 results)
  • 2002 Annual Research Report   Final Research Report Summary
  • 2001 Annual Research Report
  • Research Products

    (26 results)

All Other

All Publications (26 results)

  • [Publications] Miyauchi, K.et al.: "Cloning and characterization of linR, involved in regulation of downstream pathway for gamma-HCH degradation in Sphingomonas paucimobilis UT26"Appl.Environ.Microbiol.. 68. 1803-1807 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Oakley, A.et al.: "Exploring the structure and activity of haloalkane dehalogenase from Sphingomonas paucimobilis UT26 : evidence for product-and water-mediated inhibition"Biochemistry. 41. 4847-4855 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Genka, H.et al.: "Site-specific recombination system encoded by toluene catabolic transposon Tn4651"J.Bacteriol.. 184. 4757-4766 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Bohac, M.et al.: "Halide-stabilizing residues of haloalkane dehalogenases studied by quantum mechanic calculations amid site-directed mutagenesis"Biochemistry. 41. 14272-14280 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] 永田裕二: "有機塩素系農薬による汚染浄化のための環境バイオテクノロジー"J.Environ.Biotechnol.. 2. 25-38 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Nagata, Y et al.: "Reconstruction of Mycobacterial dehalogenase Rv2579 by cumulative mutagenesis of haloalkane dehalogenase LinB"Appl.Environ.Microbiol.. 69. 2349-2355 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] 永田裕二, 遠藤銀朗 他: "人に役立つ微生物のはなし(くらしの中の化学と生物8)"学会出版センター(東京)羽柴輝良編集. 227 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Miyauchi,K. et al.: "Cloning and characterization of linR, involved in regulation of downstream pathway for gamma-HCH degradation in Sphingomonas paucimobilis UT26"Appl. Environ. Microbiol. 68. 1803-1807 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Oakley, A. et al.: "Exploring the structure and activity of haloalkane dehalogenase from Sphingomonas paucimobilis UT26 : evidence for product-and water-mediated inhibition"Biochemistry. 41. 4847-4855 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Genka,H. et al.: "Site-specific recombination systern encoded by toluene catabolic transposon Tn4651"J.Bacteriol. 184. 4757-4766 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Bohac,M. et al.: "Halide-stabilizing residues of haloalkane dehalogenases studied by quantum mechanic calculations and site-directed mutagenesis"Biochemistry. 41. 14272-14280 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Nagata,Y.: "Biotechnology for bioremediation of soil contaminated with organochlorine agricultural chemicals (in Japanese)"J.Environ. Biotechnol. 2. 25-38 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Nagata,Y. et al.: "Reconstruction of Mycobacterial dehalogenase Rv2579 by cumulative mutagenesis of haloalkane dehalogenase LinB"Appl. Environ. Microbiol. 69. 2349-2355 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] 永田裕二: "有機塩素系農薬による汚染浄化のための環境バイオテクノロジー"J. Environ. Biotechnol.. 2. 25-38 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Bohac, M. et al.: "Halide-stabilizing residues of haloalkane dehalogenases studied by quantum mechanic calculations and site-directed mutagenesis"Biochemistry. 41. 4847-4855 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Genka, H. et al.: "Site-specific recombination system encoded by toluene catabolic transposon Tn4651"J. Bacteriol.. 184. 4757-4766 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Lee, H.-S.et al.: "Employment of the human estrogen receptor β ligand-binding domain and co-activator SRC1 nuclear receptor-binding domain for the construction of a yeast two-hybrid detection system for endocrine disrupters"J. Biochem.. 131. 399-405 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Oakley, A. et al.: "Exploring the structure and activity of haloalkane dehalogenase from Sphingomonas paucimobilis UT26 : evidence for product-and watermediated inhibition"Biochemistry. 41. 4847-4855 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Nagata, Y. et al.: "Reconstruction of Mycobacterial dehalogenase Rv2579 by cumulative mutagenesis of haloalkane dehalogenase LinB"Appl. Environ. Microbiol.. 69(in press). (2003)

    • Related Report
      2002 Annual Research Report
  • [Publications] 永田裕二, 遠藤銀朗 他: "人に役立つ微生物のはなし(くらしの中の化学と生物8)"学会出版センター(東京)羽柴輝良編集. 227 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] S.Marvanova, Y.Nagata, M.Wimmerova, J.Sykorova, K.Hynkova, J.Damborsky: "Biochemical characterzation of broad-specificity enzymes using multivariate experimental design and a colorimetric microplate assay : characterization of the haloalkane dehalogenase mutants"J.Microbiological Methods. 44. 149-157 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] L.Trantirek, K.Hynkova, Y.Nagata, A.G.Murzin, A.Ansorgova, V.Sklenar, J.Damborsky: "Reaction mechanism and stereochemistry of gamma-hexachlorocyclohexane dehydrochlorinase LinA"J. Biol. Chem.. 276・11. 7734-7740 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Y.Ohtsubo, M.Delawary, K.Kimbara, M.Takagi, A. Ohta, Y.Nagata: "BphS, a key transcriptional regulator of bph genes involved in PCB/biphenyl degradation in Pseudomonas sp.KKS102"J. Biol. Chem.. 276・39. 36146-36154 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] J.Damborsky, J., E.Rorije, A.Jesenska, Y.Nagata, G.Klopman, W.J.G.M.Peijnenburg: "Structure-specificity relationships for haloalkane dehalogenases"Environ. Toxi. Chem.. 20・12. 2681-2689 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Y.Nagata, K.Mori, M.Takagi, A.G.Murzin, J.Damborsky: "Identification of Protein Fold and Catalytic Residues of gamma-hexachlorocyclohexane Dehydrochlorinase LinA"Proteins : Structure, Function, and Genetics. 45. 471-477 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] K.Miyauchi, H.-S.Lee, M.fukuda, M.Takagi, Y.Nagata: "Cloning and characterization of linR, involved in regulation of downstream pathway for gamma-HCH degradation in Sphingomonas paucimobilis UT26"Appl. Environ. Microbiol.. 68・4(in press). (2002)

    • Related Report
      2001 Annual Research Report

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Published: 2001-04-01   Modified: 2016-04-21  

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