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Elucidation of protein stability modeled by cytochrome c

Research Project

Project/Area Number 13660341
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Applied molecular and cellular biology
Research InstitutionHIROSHIMA UNVERSITY (2002)
Osaka University (2001)

Principal Investigator

SAMBONGI Yoshihito  Hiroshima University, Graduate School of Biosphere Science, 大学院・生物圏科学研究科, 助教授 (10222027)

Co-Investigator(Kenkyū-buntansha) UEDA Ikuo  Osaka University, Institute of Scientific and Industrial Research Professor, 産業科学研究所, 教授 (60191912)
Project Period (FY) 2001 – 2002
Project Status Completed (Fiscal Year 2002)
Budget Amount *help
¥3,300,000 (Direct Cost: ¥3,300,000)
Fiscal Year 2002: ¥1,600,000 (Direct Cost: ¥1,600,000)
Fiscal Year 2001: ¥1,700,000 (Direct Cost: ¥1,700,000)
Keywordscytochrome c / thermopile / DSC / redox function / protein stability / 示差熱量計 / タンパク質 / 安定性
Research Abstract

Thermal stability was measured for variants of cytochrome c-551 (PA c-551) from a mesophile, Pseudomonas aeruginosa, and a thermophilic counterpart, Hydrogenobacter thermophilus cytochrome c-552 (HT c-552), by differential scanning calorimeter (DSC) at pH 3.6. The mutated residues in PA c-551, selected with reference to the corresponding residues in HT c-552, were located in three spatially separated regions: Region I, Phe-7 to Ala / val-13 to Met; region II, Glu-34 to Try / Phe-43 to Tyr; and region III, Val-78 to Ile. The thermodynamic parameters determined indicated that the mutations in regions I and III caused enhanced stability through not only enthalpy but also entropic contributions, which reflected improved packing of the side chains. On the other hand, the mutated region II made enthalpy contributions to the stability through electrostatic interactions. The differences in the Gibbs free energy changes og unfolding (Δ(ΔG)) for the mutation(s) in each region and their combination(s) showed that the three regions contributed to the overall stability in an additive manner. However, the mutations in regions I+II+III together resulted in compensation of the increased enthalpy change by the entropy change. The values for heat capacity changes (ΔCp) of the PA c-551 variants were larger than or equal to that of the wild -type. In contrast, HT c-552 had a smaller ΔCp value, resulting in higher ΔG values over a wide temperature range (0 to 100℃), compared to the PA c-551 variants; this contributed to the highest stability of HT c-552. Our DSC measurement results, in conjunction with mutagenesis and structural studies on the homologous mesophilic and thermophilic cytochromes c, provided an extended thermodynamic view fo protein stabilization.

Report

(3 results)
  • 2002 Annual Research Report   Final Research Report Summary
  • 2001 Annual Research Report
  • Research Products

    (13 results)

All Other

All Publications (13 results)

  • [Publications] Sambongi, Y: "Cytochrome c from a thermophilic bacterium has provided insights into the mechanism of protein maturation, folding, and stability"Eur. J. Biochem.. 269. 3355-3361 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Sambongi, Y: "A novel water-soluble Hantzsch 1,4-dihydropyridine compound that functions in biological processes through NADH regeneration"J. Org. Chem.. 67. 3499-3501 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Uchiyama, S.: "Thermodynamic characterization of mesophilic cytochrome c variants and its thermophilic counterpart"Protein Eng.. 15. 455-461 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] 三本木 至宏: "プロトン情報の生物学的エネルギー変換に関する研究"日本農芸化学会誌. 75. 1061-1065 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Sambongi, Y.: "Cytochrome c from a thermophilic bacterium has provided insights into the mechanism of protein maturation, folding, and stability"Eur. J. Biochem. 269. 3355-3361 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Sambongi, Y.: "A novel water-soluble Hantzsch 1, 4-dihydropyridine compound that functions in biological processes through NADH regeneration."J. Org. Chem. 67. 3499-3501 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Uchiyama, S.: "Thermodynamic characterization of mesophilic cytochrome c variants and its thermophilic counterpart."Protein Eng.. 15. 455-461 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Sambongi, Y.: "Studies on biological energy conversion from proton."Nippon Nougeikagaku Kaishi. 75. 1061-1065 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Sambongi, Y.: "Cytochrome c from a thermophilic bacterium has provided insights into the mechanism of protein maturation, folding, and stability"Eur. J. Biochem.. 269. 3355-3361 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Sambongi, Y.: "A novel water-soluble Hantzsch 1,4-dihydropyridine compound that functions in biological processes through NADH regeneration"J. Org. Chem.. 67. 3499-3501 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Uchiyama, S.: "Thermodynamic characterization of mesophilic cytochrome c variants and its thermophilic counterpart"Protein Eng.. 15. 455-461 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] 三本木 至宏: "プロトン情報の生物学的エネルギー変換に関する研究"日本農芸化学会誌. 75. 1061-1065 (2001)

    • Related Report
      2002 Annual Research Report
  • [Publications] Uchiyama S. et al.: "Thermodynamic characterization of vanants of mesophilic cytochrome c and its thermophilic counterpart"Protein Engineering. (印刷中). (2002)

    • Related Report
      2001 Annual Research Report

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Published: 2001-04-01   Modified: 2016-04-21  

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