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Mechanism of iron-sulfur cluster assembly : Structure and functional interaction of Isc proteins

Research Project

Project/Area Number 13680690
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Structural biochemistry
Research InstitutionOsaka University

Principal Investigator

TAKAHASHI Yasuhiro  Graduate School of Science, Department of Biology, Lecturer, 大学院・理学研究科, 講師 (10154874)

Co-Investigator(Kenkyū-buntansha) OH-OKA Hirozo  Graduate School of Science, Department of Biology, Associate Professor, 大学院・理学研究科, 助教授 (30201966)
FUKUYAMA Keiichi  Graduate School of Science, Department of Biology, Professor, 大学院・理学研究科, 教授 (80032283)
Project Period (FY) 2001 – 2002
Project Status Completed (Fiscal Year 2002)
Budget Amount *help
¥3,700,000 (Direct Cost: ¥3,700,000)
Fiscal Year 2002: ¥600,000 (Direct Cost: ¥600,000)
Fiscal Year 2001: ¥3,100,000 (Direct Cost: ¥3,100,000)
Keywordsiron-sulfur protein / iron sulfur cluster / isc operon / suf operon / protein-protein interaction / functional machinery / IscS / IscU / フェレドキシン / 分子シャペロン / Fdx
Research Abstract

Iron-sulfur proteins are present in almost all living organisms and exhibit diverse functions, which include electron transport, redox and non-redox catalysis, and sensing for regulatory processes. They contain clusters of iron and sulfur atoms with vailiable complexity, such as [2Fe-2S], [3Fe-4S], and [4Fe-4S] clusters. Still very little is known about the in vivo synthesis of these clusters, which is believed to require a complex machinery encoded us prokaryotes by the isc (iron suffer cluster) operon, iscRSUA-hscBA-fdx-ORF3. We have undertaken genetic and biochemical approaches to elucidate the complex mechanism by which Fe-S dusters are assembled.
1.Essential compornents of the ISC machinery (IscS, IscU, HscB, HscA, and Fdx) have been identified by a systematic mutational analysis of the isc operon in Eseherichia coli.
2.Biochemical characterization of the recombinant IscA led to the identification of labile [2Fe-2S] cluster and specific interaction with Fdx.
3.We determined the crystal structure of Fdx, which suggested the important role of Cys46 located on the molecular susface in the vicinity of [2Fe-2SJ cluster.
4.Network of protein-protein interactions among the components of the ISC machinery has been elucidated by the combination of two-hybrid and pull-down analyses.
5.We have isolated a covalently-bound IscS/IscU complex and identified that Cys328 of IseS and Cys63 of lscU are the sites of disulfide bridge formation.
6.We have analyzed spontaneous psuedorevertants isolated from a mutant shale lacking all the components of the ISC machinery, which led to the identification of the sufABCDSE (suf) operon participating in the ISC-independent pathway for the assembly of Fe-S clusters. The genes homologous to sufBC are present in a wide range of bacteria, archaea and plastids, suggesting that this type of system is almost ubiquitous in nature.

Report

(3 results)
  • 2002 Annual Research Report   Final Research Report Summary
  • 2001 Annual Research Report
  • Research Products

    (24 results)

All Other

All Publications (24 results)

  • [Publications] Sandrine Ollagnier-de-Choudens: "Iron-Sulfur Cluster Assembly : Characterization of IscA and Evidence for a Specific and Functional Complex with Ferredoxin"J. Biol. Chem.. 276・(25). 22604-22607 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Umechiyo Tokumoto: "Genetic Analysis of the isc Operon in Escherichia coli Involved in Biogenesis of Cellular Iron-Sulfur Proteins"J. Biochem.. 130・(1). 63-71 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Yoshimitsu Kakuta: "Crystal Structure of Escherichia coli Fdx, an Adrenodoxin-type Ferredoxin Involved in the Assembly of Iron-sulfur Clusters"Biochemistry. 40・(37). 11007-11012 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Keiichi Fukuyama: "Atomic Resolution Structures of Oxidized [4Fe-4S] Ferredoxin from Bacillus thremoproteolyticus in Two Crystal Forms : Systematic distortion of [4Fe-4S] Cluster in the Protein"J. Mol. Biol.. 315・(5). 1155-1166 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Shin-ichiro Kato: "Cys328 of IscS and Cys63 of IscU are the sites of disulfide bridge formation in a covalently-bound IscS/IscU complex : Implication for the mechanism of iron-sulfur cluster assembly"Proc. Natl. Acad. Sci. USA. 99・(9). 5948-5952 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Umechiyo Tokumoto: "Network of Protein-Protein Interactions among Iron-Sulfur Cluster Assembly Proteins in Escherichia coli"J. Biochem.. 131・(5). 713-719

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Hisaaki Mihara: "The iscS gene is essential for the biosynthesis of 2-selenouridine in tRNA and the selenocysteine containing formate dehydrogenase H"Proc. Natl. Acad. Sci. USA. 99・(10). 6679-6683 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Yasuhiro Takahashi: "A third bacterial system for the assembly of iron-sulfur clusters with homologs in archaea and plastids"J. Biol. Chem.. 277・(32). 28380-28383 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Sandrine Ollagnier-de-Choudens: "Iron-Sulfur Cluster Assembly : Characterization of IscA and Evidence for a Specific and Functional Complex with Ferredoxin"J. Bid Chem.. 276(25). 22604-22607 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Umechiyo Tokumoto: "Genetic Analysis of the ire Operon in Escherichia coli Involved in Biogenesis of Cellular Iron-Sulfur Proteins"J. Biochem.. 130(1). 63-71 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Yoshimitsu Kakuta: "Crystal Structure of Escherichia coli Fdx, an Adrenodoxin-type Fenedoxin Involved in the Assembly of Iron-sulfur Clusters"Biochemistry. 40(37). 11007-11012 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Keiichi Fukuyama: "Atomic Resolution Structures of Oxidized [4Fe-4S] Ferredoxin from Bacillus thremoproteolytics in Two Crystal Forms : Systematic distortion of [4Fe-4S] Cluster in the Protein"J. Mol. Biol.. 315(5). 1155-1166 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Shin-ichiro Kato: "Cys328 of IscS and Cys63 of IscU are the sites of disulfide bridge formation in a covalently-bound IscS/IscU complex : Implication for the mechanism of iron-sulfur cluster assembly"Proc. Natl. Acad. Sci. USA. 99(9). 5948-5952 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Uniechiyo Tokumoto: "Network of Protein-Protein Interactions among Iron-Sulfur Cluster Assembly Proteins in Escherichia coli"J. Biochem.. 131(5). 713-719 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Hisaaki Mihara: "The iscS gene is essential for the biosynthesis of 2-selenouridine in tRNA and the selenocysteine containing formate dehydrogenase H"Proc. Natl. Acad. Sci. USA. 99(9). 6679-6683 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Yasuhiro Takahashi: "A third bactetial system for the asshmbly of iron-sulfur clusters with homologs in Archaea and plaslids"J. Boil. Chem.. 277(32). 28380-28383 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Shin-ichiro Kato: "Cys328 of IscS and Cys63 of IscU are the sites of disulfide bridge formation in a covalently-bound IscS/IscU complex : Implication for the mechanism of iron-sulfur cluster assembly"Proc. Natl. Acad. Sci. USA. 99・(9). 5948-5952 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Umechiyo Tokumoto: "Network of Protein-Protein Interaction among Iron-Sulfur Cluster Assembly Proteins in Escherichia coli"J. Biochem.. 131・(5). 713-719 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Hisaaki Mihara: "The iscS gene is essential for the biosynthesis of 2-selenouridine in tRNA and the selenocysteine containing formate dehydrogenase H"Proc. Natl. Acad. Sci. USA. 99・(10). 6679-6683 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Yasuhiro Takahashi: "A third bacterial system for the assembly of iron-sulfur clusters with homologs in archaea and plastids"J. Biol. Chem.. 277・(32). 28380-28383 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Sandrine Ollagnier-de-Choudens: "Iron-Sulfur Cluster Assembly : Characterization of IscA and Evidence for a Specific and Functional Complex with Ferredoxin"J. Biol. Chem.. 276・(25). 22604-22607 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Umechiyo Tokumoto: "Genetic Analysis of the isc Operon in Escherichia coli Involved in Biogenesis of Cellular Iron-Sulfur Proteins"J. Biochem.. 130・(1). 63-71 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Yoshimitsu Kakuta: "Crystal Structure of Escherichia coli Fdx, an Adrenodoxin-type Ferredoxin Involved in the Assembly of Iron-sulfur Clusters"Biochemistry. 40・(37). 11007-11012 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Keiichi Fukuyama: "Atomic Resolution Structures of Oxidized [4Fe-4S] Ferredoxin from Bacillus thremoproteolyticus in Two Crystal Forms : Systematic distortion of [4Fe-4S] Cluster in the Protein"J. Mol. Biol.. 315・(5). 1155-1166 (2002)

    • Related Report
      2001 Annual Research Report

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Published: 2001-04-01   Modified: 2016-04-21  

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