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Developing an E. coli-expression-function platform for study of 3-D structure-function relationships of channel molecules

Research Project

Project/Area Number 13680737
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Biophysics
Research InstitutionFukui Medical University

Principal Investigator

OIKI Shigetoshi  Fukui Medical University, Faculty of Medicine, Professor, 医学部, 教授 (10185176)

Co-Investigator(Kenkyū-buntansha) YAMADA Katsuyuki  Fukui Medical University, Faculty of Medicine, Research Associate, 医学部, 助手 (20313744)
SHIMIZU Horofumi  Fukui Medical University, Faculty of Medicine, Research Associate, 医学部, 助手 (50324158)
KONNO Takashi  Fukui Medical University, Faculty of Medicine, Associate Professor, 医学部, 助教授 (50225637)
YABE Isao  Tokyo University, Institute of Molecular and Cellular Biosciences, Assistant Professor, 分子細胞生物学研究所, 助手 (90111575)
Project Period (FY) 2001 – 2002
Project Status Completed (Fiscal Year 2002)
Budget Amount *help
¥3,600,000 (Direct Cost: ¥3,600,000)
Fiscal Year 2002: ¥1,400,000 (Direct Cost: ¥1,400,000)
Fiscal Year 2001: ¥2,200,000 (Direct Cost: ¥2,200,000)
KeywordsIon channel / KcsA channel / patch clamp technique / planar lipid bilayer method / single-channel recording / E. coli / whole-cell recording / liposome
Research Abstract

To elucidate structure-function relationships of ion channels a novel experimental platform is developed. So far only ion channels originated from prokaryotes were successfully crystallized. To study such targets more effectively, electrophysiological recording system for ion channels from prokaryotes is critically important. Based on Yabe's method for current recordings from giant E. coli, channel recording techniques were explored. Many technical problems arose for recording whole-cell current from giant bacteria. These problems have been mostly solved, although a few problems still remain.
KcsA channel was expressed and recorded by inside-out excised patch methods from giant E. coli. Reconstituted KcsA channel into liposome was also recorded by a modified tip-dip method. On the other hand, whole-cell current of KcsA channel could not be observed from giant bacteria. The discrepancy between successful single channel recordings and unsuccessful whole-cell recordings poses fundamental issue on functional role of ion channels on bacteria.

Report

(3 results)
  • 2002 Annual Research Report   Final Research Report Summary
  • 2001 Annual Research Report
  • Research Products

    (23 results)

All Other

All Publications (23 results)

  • [Publications] W.Uozumi, K.Yamada, S.Goshima, T.Ona, S.Oiki: "Sodium blocking induced by a point mutation at the C-terminal end of the pore helix of KAT1"J. Membrane Biol. 181. 163-170 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Horie T, Yoshida K, Nakayama H, Yamada K, Schroeder J I, Uozumi N: "Two types of HKT transporters with different properties of Na^+ and K^+ transport in Oryza sativa"Plant Journal. 27. 129-138 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Master P, Hosoo K, Nakayama H, Oiki S, Schroeder J I, Uozumi N: "Glycine residues in potassium channel-like selectivity filters determine Potassium selectivity in four-loop-per-subunit HKT"Proc Natl-Acad Sci USA. (In press).

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] 老木 成稔: "生物物理ハンドブック"石渡 信一, 桂 勲, 桐野 豊, 美宅 成樹 編 広川書店(印刷中).

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Uozumi, K. Yamada, S. Goshima, T.Ona, and S.Oiki: "Sodium Blocking Induced by a Point Mutation at the C-terminal End of the Pore Helix of KAT1 Channel"J.Membr.Biol. 181. 163-170 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Horie, T., Yoshida, K., Nakayama, H., Yamada, K., Oiki, S. and Shinmyo, A.: "Two types of HKT transporters with different properties of Na^+ and K^+ transport in Oryza sativa"Plant J.. 27. 129-138 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Konno, T: "Multistep nucleus formation and a separate subunit contribution of the amyloidgenesis of heat-denatured monellin"Protein Sci.. 10. 2093-2101 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Konno, T: "Amyloid-induced aggregation and precipitation of soluble proteins : an electrostatic contribution of the Alzheimer's beta(25-35) amyloid fibril"Biochemistry. 40. 2148-2154 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Maeser, P., Hosoo, Y., Goshima, S., Horie, T., Eckelman, B., Yamada, K., Yoshida, K., Bakker, E.P., Shinmyo, A., Oiki, S., Schroeder, J.I., and Uozumi, N.: "Glycine residues in potassium-channel-like selectivity filters determine potassium selectivity in four-loop-per-subunit HKT transporters from plants"Proc.Natl.Acad.Sci.USA. 99. 6428-6433 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Shimizu, H., Toyoshima, C. and Oiki, S: "Interaction between Tetraethylammonium and Permeant Cations at the Inactivation Gate of the HERG Potassium Channel"Jpn.J.Physiol.. 53. 25-34 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Berthomieu, P., Nublat, A., Brackenbury, W.J., Lambert, C., Savio, C., Uozumi, N., Oiki, S., Yamada, K., Conejero, G., Cellier, F., Gosti, F., Simonneau, T., Very, A.-A., Sentenac, H. and Casse, F.: "Functional analysis of AtHKT1 in Arabidopsis shows that Na^+ recirculation by the phloem is crucial for salt tolerance"EMBO J.. 22. 2004-2014 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Futaki, S., Zhang, Y., Kiwada, T., Yagami, T., Oiki, S. and Sugiura, Y.: "Gramicidin-based Channel Systems for the Detection of Protein-ligand Interaction"Bioorg.Med.Chem.. In press.

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] W.Uozumi, K.Yamada, S.Goshima, T.Ona, S.Oiki: "Sodium blocking induced by a point mutation at the C-terminal end of the pore helix of KAT1"J.Membrane Biol.. 181. 163-170 (2001)

    • Related Report
      2002 Annual Research Report
  • [Publications] Horie T, Yoshida K, Nakayama H, Yamada.K, Oiki S, Schroender.J.I, Uozumi N: "Two types of HKT transporters with different properties of Na+ and K+ transport in Oryza sativa"Plant Journal. 27. 129-138 (2001)

    • Related Report
      2002 Annual Research Report
  • [Publications] Maeser P, Hosoo K, Nakayama H, Oiki S, Schroeder J I, Uozurni N: "Glycine residues in potassium channel-like selectivity filters determine Potassium selectivity in four-loop-per-subunit HKT"Proc.Natl.Acad.Sci.USA. 99. 6428-6433 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Kamatari.Y., Dobson, C.M., Konno, T.: "Structural dissection of alkaline-denatured pepsin"Protein Sci.. 12. 717-724 (2003)

    • Related Report
      2002 Annual Research Report
  • [Publications] Shimizu, H., Toyoshima, C., Oiki.S: "Interaction between Tetraethylammonium and Permeant Cations at the Inactivation Gate of the HERG Potassium Channel"Jpn.J.Physiol.. 53. 25-34 (2003)

    • Related Report
      2002 Annual Research Report
  • [Publications] Futaki, S., Zhang, Y., Kiwada, T., Yagami, T., Oiki, S., Sugiura, Y.: "Gramicidin-based Channel Systems for the Detection of Protein-ligand Interaction"Bioorg.Med.Chem.. (In press). (2003)

    • Related Report
      2002 Annual Research Report
  • [Publications] 老木 成稔: "生物物理ハンドブック"石渡 信一, 桂 勲, 桐野 豊, 美宅 成樹 編 広川書店(印刷中).

    • Related Report
      2002 Annual Research Report
  • [Publications] N.Uozumi, K.Yamada, S.Goshima, T.Ona, S.Oiki: "Sodium blocking induced by a point mutation at the C-terminal end of the pore helix of KAT1"J.Membrane Biol. 181. 163-170 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Horie.T, Yoshida.K, Nakayama.H, Yamada.K, Oiki.S, Shimmyo.A: "Two types of HKT transporters with different properties of Na^+ and k^+ transport in Oryza sativa"Plant Journal. 27. 129-138 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Maser P, Hosoo K, Nakayama H, Oiki S, Schroeder JI, Uozumi N: "Glycine residues in potassium channel-like selectivity filters determine potassium selectivity in four-loop-pet-subumit HKT"Prou Natl-Acad, Sci USA. (in press).

    • Related Report
      2001 Annual Research Report
  • [Publications] 老木成稔: "生物物理ハンドブック"石渡信一, 桂勲, 桐野豊, 美宅成樹編(印刷中)広川書店.

    • Related Report
      2001 Annual Research Report

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Published: 2001-04-01   Modified: 2016-04-21  

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