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Micro-environment of Fe-Cu binuclear center in Cytoobrome Oxidase Studied by Electron Paramagnetic Resonance Spectroscopy

Research Project

Project/Area Number 13680741
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Biophysics
Research InstitutionOsaka University

Principal Investigator

HORI Hiroshi  Osaka Univ., Grad. Sch. of Engi. Sci., Assistant Professor, 基礎工学研究科, 助手 (20127294)

Project Period (FY) 2001 – 2002
Project Status Completed (Fiscal Year 2002)
Budget Amount *help
¥3,300,000 (Direct Cost: ¥3,300,000)
Fiscal Year 2002: ¥900,000 (Direct Cost: ¥900,000)
Fiscal Year 2001: ¥2,400,000 (Direct Cost: ¥2,400,000)
KeywordsCytocbrome c oxidase / bo-type ubipuinol oxidase / Heme-Cu_B binuclear center / P-intermediate / F-intermediate / Electron Paramagnetic Resonance / Double mode EPR cavity / Spin-spin exchange interaction
Research Abstract

Cytochrome bo-type ubiquinol oxidase from Eschenchia coli is a member of heme-copper terminal oxidase superfamily. It contains four redox centers, heme b, heme o, Cu_B, and ubiquinol-8(Q_H). Heme o and Cu_B constitute a binuclear center and reduce dioxygen to water. To elucidate the mechanism of dioxygen reduction, it is inevitable to detennine the electronic states of the redox centers in the reaction intermediates.
1. The fully oxidized cytochrome bo contains a spin-coupled pair of high-spin heme o (S_<Fe>=5/2) and Cu_B (S_<Cu>=1/2) with an effective spin of S'=2. Integer-spin EPR signals at g=3.6 were investigated by a newly developed bimodal X-band cavity. No signal was observed with the parallel mode cavity due to its low sensitlvty.
2. P intermediate can be obtained by addition of low concentrations of hydrogen peroxide to the oxidized enzyme (pulsed form). The reaction of fully oxidized cytochrome bo with hydrogen peroxide was studied by EPR. In the presence of 1 molar equiv of hydrogen peroxide, two EPR signals were observed at g〜2 typical of organic radicals. The broader signal might be a cross-linked tyrosine radical that is magnetically coupled to Cu_B, but it is uncertain at this moment. It would seem quite possible that this radical is an intermediate in the mechanism of dioxygen reduction.
3. The reaction of fully reduced cytochrome be with dioxygen was investigated by the direct mixing method with EPR spectroscopy combined with the rapid-freeze quenching device. While no EPR signal derived from the binuclear center and heme b was observed in the time domain from 0.2 to 1 ms, the signals derived from the ferric hydroxide-bound form of heme o and the oxidized form of heme b were simultaneously observed after 1 ms. We interpret that the enzyme is in the F and hydroxy intermediates at 0.2 and 1 ms, respectively.

Report

(3 results)
  • 2002 Annual Research Report   Final Research Report Summary
  • 2001 Annual Research Report
  • Research Products

    (21 results)

All Other

All Publications (21 results)

  • [Publications] Ryu MAKINO: "YC-1 Facilitates the Release of the Proximal His Residue in the NO and CO complexes of Soluble Guanylate Cyclase"J. Biol. Chem.. (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Sabro NEYA: "Functional Analysis of Iron Hemiporphycene as the Prosthetic Group of Myoglobin"Inorg. Chem.. 42. 1456-1461 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Motomasa TANAKA: "Activation of Hydrogen Peroxide in Horseradish Peroxidase Occurs within 〜300 μs Observed by a New Freeze-Quench Device"Biophysical J.. 84. 1998-2004 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Shiro YOSHIOKA: "Roles of the Proximal Hydrogen Bonding Network in Cytochrome P450cam-Catalyzed Oxygenation"J. Am. Chem. Soc.. 124. 14571-14579 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Haruto ISHIKAWA: "NO-induced Activation Mechanism of the Heme-regulated elF2α Kinase"J. Am. Chem. Soc.. 124. 13696-13697 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Balan VENKTESH: "Coordination Geometry of Cu-porphyrin in Cu(II)-Fe(II) Hybrid Hemoglobins Studied by Q-band EPR and Resonance Raman Spectroscopies"J. Inorg. Biochem.. 88. 310-315 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Ryu MAKINO: "YC-1 Facilitates the Release of the Proximal His Residue in the NO and CO complexes of Soluble Guanylate Cyclase"J. Biol. Chem.. in press. (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Sabro NEYA: "Functional Analysis of Iron Hemiporphycene as the Prosthetic Group of Myoglobin"Inorg. Chem.. 42. 1456-1461 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Motomasa TANAKA: "Activation of Hydrogen Peroxide in Horseradish Peroxidase Occurs within 〜300μs Observed by a New Freeze-Quench Device"Biophysical J.. 84. 1998-2004 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Shiro YOSHIOKA: "Roles of the Proximal Hydrogen Bonding Network in Cytochrome P45Ocam-Catalyzed Oxygenation"J. Am. Chem. Soc.. 124. 14571-14579 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Haruto ISHIKAWA: "NO-induced Activation Mechanism of the Heme-regulated e1F2α Kinase"J. Am. Chem. Soc.. 124. 13696-13697 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Balan VENKATESH: "Coordination Geometry of Cu-porphyrin in Cu(II)-Fe(II) Hybrid Hemoglobins Studied by Q-band EPR and Resonance Raman Spectroscopies"J. Inorg. Biochem.. 88. 310-315 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Motomasa TANAKA: "Activation Hydrogen Peroxide in Horseradish Peroxidase Occures within 〜300 μs Observed a New Freeze-Quench Device"Biophysical J.. 84(印刷中). (2003)

    • Related Report
      2002 Annual Research Report
  • [Publications] Ryu MAKINO: "YC-1 Facilitates the Release of the Proximal His Residue in the NO and CO complexes of Soluble Guanylate Cyclase"J. Biol. Chem.. (印刷中). (2003)

    • Related Report
      2002 Annual Research Report
  • [Publications] Saburo NEYA: "Functional Analysis of Iron Hemiporphycene as the Prosthetic Group of Myoglobin"Inorg. Chem.. 42. 1456-1461 (2003)

    • Related Report
      2002 Annual Research Report
  • [Publications] Shiro YOSHIOKA: "Roles of the Proximal Hydrogen Bonding Network in Cytochrome P450cam-Catalyzed Oxygenation"J. Am. Chem. Soc.. 124. 14571-14579 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Haruto ISHIKAWA: "NO-induced Activation Mechanism of the Heme-regulated elF2α Kinase"J. Am. Chem. Soc.. 124. 13696-13697 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Balan.VENKATESH: "Coordination Geometry of Cu-porphyrin in Cu(II)-Fe(II) Hybrid Hemoglobins Studied by Q-band EPR and Resonance Raman Spectroscopies"J. Inorg. Biochem.. 88. 310-315 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] k.Takeuchi: "Adrenodoxin-Cytochrome P450scc Interaction as Revealed by EPR Spectroscopy : Comparison with Putidaredoxin-Cytochrome P450cam System"Journal of Biochemistry. 130. 789-797 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] B.Venkatesh: "Coordination geometry of Cu-porphyrin inCu(II)-Fe(II) hybrid hemoglobins studied by Q-band EPR and resonance Raman spectroscopies"Journal of Inorganic Biochemistry. (印刷中). (2002)

    • Related Report
      2001 Annual Research Report
  • [Publications] S.Nagatomo: "Changes in the Abnormal α-Subunit upon CO-Binding to the Normal β-Subunit of Hb M Boston : Resonance Raman, EPR, and CD Study"Biophysical Chemistry. (印刷中). (2002)

    • Related Report
      2001 Annual Research Report

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Published: 2001-04-01   Modified: 2016-04-21  

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