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Structural Characteristics of evolutionally developed phase spaces of ecosystems and proteins

Research Project

Project/Area Number 13831006
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research InstitutionOsaka University

Principal Investigator

KIKUCHI Makoto  Osaka University, Cybermedia Center, Professor, サイバーメディアセンター, 教授 (50195210)

Co-Investigator(Kenkyū-buntansha) TOKITA Kei  Osaka University, Cybermedia Center, Associate Professor, サイバーメディアセンター, 助教授 (00263195)
CHAWANYA Tsuyoshi  Osaka University, Graduate School of Information Science and Technology, Associate Professor, 大学院・情報科学研究科, 助教授 (80294148)
Project Period (FY) 2001 – 2002
Project Status Completed (Fiscal Year 2002)
Budget Amount *help
¥3,500,000 (Direct Cost: ¥3,500,000)
Fiscal Year 2002: ¥1,100,000 (Direct Cost: ¥1,100,000)
Fiscal Year 2001: ¥2,400,000 (Direct Cost: ¥2,400,000)
Keywordsecosystem / protein / evolution / phase space / dynamical system / free-energy landscape / molecular motor / 大変形 / 自由エネルギー構造 / 格子モデル / 安定性 / 共生 / レプリケーター方程式
Research Abstract

In this project, we investigated structural characteristics of evolutionary developed phase spaces of ecosystems and proteins.
For large-scale ecosystems, the following properties were clarified: The replicator equation systems with random interactions can have a stable coexistent state of many species, when the interactions are "antisymmetric". This result serves as the first counterexample for so-called "May's paradox" which is famous in the field of mathematical ecology. In the resultant stable ecosystem, we observe a emergence of a hierarchical food web structure. We propose a new simple model based of the replicator equation systems for studying dynamics of the biodiversity by taking into account the effects of extinction, invasion and mutation.
As a basic research of dynamical systems which exhibit complex dynamics including ecosystems, we studied the intermittent transition behaviors between long-time persistent states. We found a new mechanism of emergence of chaotic metastability, and intermittent transition between these metastable states.
For proteins, we focused our attention to the free-energy landscape of Kinesine, which is one of the motor proteins. We successfully sampled the thermally equilibrium ensemble in case of a simplified interaction parameters and studied its free-energy landscape near the native state for the first time. We found that the largest fluctuating mode is localized at the switch region. In other word, large-fluctuation of the switch region is embedded in the evolutionary developed free-energy landscape of Kinesine.

Report

(3 results)
  • 2002 Annual Research Report   Final Research Report Summary
  • 2001 Annual Research Report
  • Research Products

    (10 results)

All Other

All Publications (10 results)

  • [Publications] T.Chawanya, K.Tokita: "Large dimensional Replicator Equations with Antisymmetric Random Interactions"Journal of Physical Society of Japan. 71. 429-431 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] S.Morita, T.Chawanya: "Collective motions in globally coupled tent map with stochastic updating"Physical Review E. 65(論文番号046201). (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] A.Fujita, T.Chawanya: "Slow Switching near a Blowout Bifurcation -Yet Another Mechanism -"Progress of Theoretical Physics. 109. 139-144 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] K.Tokita, A.Yasutomi: "Emergence of a complex and stable network in a model ecosystem with extinction and mutation"Theoretical Population Biology. 63. 131-146 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Tsuyoshi Chawanya and Kei Tokita: "Large dimensional Replicator Equations with Antisymmetric Random Interactions"Journal of the Physical Society of Japan. 71. 429-431 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Satoru Morita and Tsuyoshi Chawanya: "Collective motions in globally coupled tent maps with stochastic updating"Physical Review E. 65. 046201 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Ayano Fujita and Tsuyoshi Chawanya: "Slow Switching near a Blowout Bifurcation - Yet Another Mechanism -"Progress of Theoretical Physics. 109. 139-144 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] Kei Tokita and Ayumu Yasutomi: "Emeregence of a complex and stable network in a model ecosystem with | extinction and mutation"Theoretical Population Biology. 63. 131-146 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2002 Final Research Report Summary
  • [Publications] K.Tokita, A.Yasutomi: "Emeregence of a complex and stable network in a model ecosystem with extinction and mutation"Theoretical Population Biology. 63. 131-146 (2003)

    • Related Report
      2002 Annual Research Report
  • [Publications] T.Chawanya, K.Tokita: "Large-Dimensional Replicator Equations with Antisymmetric Rondom Interactions"Journal of Physical Society of Japan. 71・2. 420-431 (2002)

    • Related Report
      2001 Annual Research Report

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Published: 2001-04-01   Modified: 2016-04-21  

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