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Study on the Stabilization of Enzyme against Heat and Organic Solvents

Research Project

Project/Area Number 13836004
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field 生物機能・バイオプロセス
Research InstitutionShinshu University

Principal Investigator

HACHIMORI Akira  Shinshu University, Faculty of Textile Sci. & Tech., Professor, 繊維学部, 教授 (30082811)

Co-Investigator(Kenkyū-buntansha) UCHIUMI Toshio  Niigata Univ., Faculty of Science, Professor, 理学部, 教授 (50143764)
Project Period (FY) 2001 – 2003
Project Status Completed (Fiscal Year 2003)
Budget Amount *help
¥3,600,000 (Direct Cost: ¥3,600,000)
Fiscal Year 2003: ¥900,000 (Direct Cost: ¥900,000)
Fiscal Year 2002: ¥1,000,000 (Direct Cost: ¥1,000,000)
Fiscal Year 2001: ¥1,700,000 (Direct Cost: ¥1,700,000)
KeywordsEscherichia coli / inorganic pyrophosphatse / thermostability / stability for organic solvents / site directed mutagenesis / Bacillus subtilis / thermophilic bacterium PS-3 / 部位特異的変異法 / 酵素 / タンパク / 耐熱性
Research Abstract

We found the following results through this study.
1.We found that the roles of two lysyl residues among the common sequence KKR (295K and 296K in inorganic pyrophosphatase from Bacillus subtilis) at the C-terminal region in Family 2 inorganic pyrophosphates (PPase) is the recognition site for the substrate. The_arginyl residue (297R in Bacillus subtilis PPase) is important for maintaining the structure for the pass to let the substrate go through.
2.Family 2 PPase is composed of two identical subunits, and each subunits contains 3 molecules of manganese ions.
3.B. subtilis PPase subunit is composed from 2 domains (N-domain from 1 to 187 and C-domain from 193 to 323), which are connected by the hinge region composed of 6 amino acid residues. Among these 6 resides, 189G is especially important to keep the enzymatically active structure.
4.The prolyl residues on the_surface region of the Family 1 PPase from Thermophilic bacterium PS-3 have no role for the heat stability of enzyme. However, the prolyl residues in the interior region are important for maintain the conformation of enzyme. Especially Pro-72 is very important for maintaining the hexamer, which is absolutely necessary for the heat stabilization of enzyme.
5.We succeeded in obtaining the variant F40K, Y57I, P74I, Q80L, S111E fo Family 1 PPase from E. coli, and we are now under investigation of their property to obtain the information about the heat stabilization and organic solvent stabilization.

Report

(4 results)
  • 2003 Annual Research Report   Final Research Report Summary
  • 2002 Annual Research Report
  • 2001 Annual Research Report
  • Research Products

    (28 results)

All Other

All Publications (28 results)

  • [Publications] Nomura, T., Hachimori, A, Uchiumi, T.et al.: "A point mutation in ribosomalprotein L7/L12 reduce its ability to form a compact dimmer structure and to assemble into GTPase center"Biochemistry. 42. 4691-4698 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Nishiyama, T., Hachimori, A., Uchiumi, T., Nakashima, N: "Structural elements in the internal ribosome entry site of Plautia stali intestine virus responsible for binding with ribosomes"Nucleic Acids Res.. 31. 2434-2442 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Masuda, H., Uchiumi, T., Hachimori, A.: "Effects of replacement of prolines with alanines on the catalytic activity and thermostability of inorganic pyrophosphatase from thermophilic bacterium PS-3"J.Biochem.. 131. 53-58 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Uchiumi, T., Honnma, S., Hachimori, A.: "Translation elogation by a hybrid ribsome in which proteins at the GTPase center of the Escherichia coli ribosome are replaced with rat counterparts"J.Biol.Chem.. 277. 3857-3862 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Hachimori, A., Baykov, A.A., Lapti, R: "Quaternary structure and metal ion requirement of family 2 pyrophosphatase from B.subtilis, S.gordonii and S.mutans"J.Biol.Chem.. 276. 24511-24518 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Shizawa, N., Uchiumi, T., Hachimori, A.: "Direct mutagenesis studies of the C-terminal fingerprint region of Bacillus subtilis pyrophosphatase"Eur.J.Biochem.. 268. 1-4 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Nomura, T., Mochizuki, R., Dabbs, E.R., Shimizu, Y., Ueda, T., Hachimori, A., Uchiumi, T.: "A point mutation in ribosomalprotein L7/L12 reduce its ability to form a compact dimmer structureand to assemble into GTPase center."Biochemistry. 42. 4691-4698 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Nishiyama, T., Yamamoto, H., Shibuya, N., Hatakeyama, Y., Hachimori, A., Uchiumi, T., Nakashima, N.: "Structural elements in the internal ribosome entry site of Plautia stali intestine virus responsible for binding with ribosomes."Nucleic Acids Res.. 31. 2434-2442 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Masuda, H., Uchiumi, T., Wada, M., Ichiba, T., Hachimori, A.: "Effects of replacement of prolines with alanines on the catalytic activity and thermostability of inorganic pyrophosphatase from thermophilic bacterium PS-3."J.Biochem.. 131. 53-58 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Uchiumi, T., Honnma, S., Nomura, T., Dabbs, E.R., Hachimori, A.: "Translation elogation by a hybrid ribsome in which proteins at the GTPase center of the Escherichia coli ribosome are replaced with rat counterparts."J.Biol.Chem.. 277. 3857-3862 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Shimizu, T., Nakagaki, M., Nishi, Y., Kobayashi, Y., Hachimori, A., Uchiumi, T.: "Interaction among silkworm ribosomal proteins P1, P2 and P0 required for functional protein binding to the GTPase domain 28S rRNA."Nucleic Acids Res.. 30. 2620-2627 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Uchiumi, T., Honma, S., Endo, Y., Hachimori, A.: "Ribosomal proteins at the stalk region modulate rRNA structures in the GTPase center."J.Biol.Chem.. 277. 41401-41409 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Parfenyev, A.N., Salminen, A., Halonen, P., Hachimori, A., Baykov, A.A., Lapti, R.: "Quaternary structure and metal ion requirement of family 2 pyrophosphatase from B. subtilis, S. gordonii and S. mutans."J.Biol.Chem.. 276. 24511-24518 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Wada, M., Uchimi, T., Ichiba, T., Hachimori, A.: "Enhancement of the thermostability of thermophilic bacterium PS-3 PPase on substitution of Ser-89 with carboxylic amino acids."J.Biochem.. 129. 955-961 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Shizawa, N., Uchiumi, T., Taguchi, J., Kisseleva, N.A., Baykov, A.A., Lahti, R., Hachimori, A.: "Direct mutagenesis studies of the C-terminal fingerprint region of Bacillus subtilis pyrophosphatase"Eur.J.Biochem.. 268. 1-4 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Nomura, T., Hachimori, A., Uchiumi, T.et al.: "A point mutation in ribosomalprotein L7/L12 reduce its ability to form a compact dimmer structureand to assemble into GTPase center"Biochemistry. 42. 4691-4698 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Nishiyama, T., Hachimori, A., Uchiumi, T., Nakashima, N: "Structural elements in the internal ribosome entry site of Plautia stali intestine virus responsible for binding with ribosomes"Nucleic Acids Res.. 31. 2434-2442 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Masuda, H., Uchiumi, T., Hachimori, A.: "Effects of replacement of prolines with alanines on the catalytic activity and thermostability of inorganic pyrophosphatase from thermophilic bacterium PS-3"J. Biochem.. 131. 53-58 (2002)

    • Related Report
      2003 Annual Research Report
  • [Publications] Uchiumi, T., Honnma, S., Hachimori, A.: "Translation elogation by a hybrid ribsome in which proteins at the GTPase center of the Escherichia coli ribosome are replaced with rat counterparts"J.Biol.Chem.. 277. 3857-3862 (2002)

    • Related Report
      2003 Annual Research Report
  • [Publications] Hachimori, A., Baykov, A.A., Lapti, R: "Quaternary structure and metal ion requirement of family 2 pyrophosphatases from B. subtilis, S. gordonii, and S. mutans."J.Biol.Chem.. 276. 24511-24518 (2001)

    • Related Report
      2003 Annual Research Report
  • [Publications] Shizawa, N., Uchiumi, T., Hachimori, A: "Directed mutagenesis studies of the C-terminal fingerprint region of Bacillus subtilis pyrophosphatase"Eur.J.Biochem.. 268. 1-4 (2001)

    • Related Report
      2003 Annual Research Report
  • [Publications] Uchiumi T., Hachimori A.et al.: "Interaction among silkworm ribosomal proteins P1, P2 and P0 required for functional protein binding to the GTPase-associated domain of 28S rRNA"Nucleic Acids Res.. 30. 2620-2627 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Uchiumi, T., Hachimori A.et al.: "Translation elongation by a hybrid ribosome in which proteins at the GTPase center of the Escherichia coli ribosome are replaced with rat counterparts"J. Biol. Chem.. 277. 3857-3862 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Uchiumi, T., Hachimori A.et al.: "Ribosomal proteins at the stalk region modulate functional rRNA structures in the GTPase center"J. Biol. Chem.. 277. 41401-41409 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] A.N.Parfenyev, A.Hachimori 他: "Quaternary structure and metal requirement of family II Pyrophosphatase from Bacillus subtilis, Streptococcus gordinii and streptoca mutans"J. Biol. Chem. 276. 24511-24518 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] M. Wada, A. Hachimori 他: "Enhancement of the thermostability of thermophilic bacterium PS-3 PPase on substitution of Ser-89 with Carboxylic amino acids"J. Biochem. 129. 955-961 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] N. Shizawa, A. Hachimori: "Directed mutagenesis studies of the c-terminal fingerprint region of Bacillus sublilis pyrophosphatase"Eur. J. Biochem. 268. 5771-5775 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Masuda, H, Hachimori, A: "Effects of replacement of Prolines with Alanines on the catalytic activity and thermostability of inorganic pyrophosphatase from thermophilic bacterium PS-3"

    • Related Report
      2001 Annual Research Report

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Published: 2001-04-01   Modified: 2016-04-21  

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