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Studies on mechanism of maintenance of DNA polymorphism and statistical methods for analyzing DNA polymorphism data

Research Project

Project/Area Number 13839005
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field 生物多様性・分類
Research InstitutionThe University of Tokyo

Principal Investigator

TAJIMA Fumiko  The University of Tokyo, Graduate School of Science, Professor, 大学院・理学系研究科, 教授 (30183065)

Project Period (FY) 2001 – 2003
Project Status Completed (Fiscal Year 2003)
Budget Amount *help
¥3,500,000 (Direct Cost: ¥3,500,000)
Fiscal Year 2003: ¥1,300,000 (Direct Cost: ¥1,300,000)
Fiscal Year 2002: ¥1,000,000 (Direct Cost: ¥1,000,000)
Fiscal Year 2001: ¥1,200,000 (Direct Cost: ¥1,200,000)
Keywordspopulation genetics / DNA polymorphism / natural selection / neutral theory / population structure / 分子進化速度 / 優性の度合い / 突然変異 / 分集団 / 移住
Research Abstract

Natural populations have a large amount of genetic variation at the DNA level. How much and why such genetic variation is maintained in a population is one of the most important questions in population genetics. A large number of possible mechanisms were proposed, such as neutral theory, slightly deleterious model, hitchhiking model, overdominance model and frequency dependent model. In this research project, I have worked on this subject and obtained the following results.
IN order to understand the mechanism of maintenance of DNA polymorphism, I have studied the case of non-random mating population and obtained new model : two subpopulations were partially separated t1 generations ago and these two subpopulations were completely separated t2 generations ago.
The relationship between natural selection and population structure were examined in terms of the mechanism of maintenance of DNA polymorphism. Using the finite island model, the following results were obtained. The effect of dominance on the amount of DNA polymorphism decreases as the migration rate decreases and the effect disappears when the migration rate is extremely low. Using the same model, the rate of molecular evolution was studied. The results indicate that the effect of dominance on the rate of molecular evolution decreases as the migration rate decreases, but the effect does not disappear even when the migration rate becomes extremely low. This means that the degree of dominance affects differently between the amount of DNA polymorphism and the rate of molecular evolution.

Report

(4 results)
  • 2003 Annual Research Report   Final Research Report Summary
  • 2002 Annual Research Report
  • 2001 Annual Research Report
  • Research Products

    (14 results)

All Other

All Publications (14 results)

  • [Publications] Innan H., Tajima F.: "A statistical test for the difference in the amounts of DNA variation between two populations"Genetical Research. 80. 15-25 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Teshima K.M., Tajima F.: "The effect of migration during the divergence"Theoretical Population Biology. 62. 81-95 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] 田嶋 文生: "遺伝子系図学とその課題(特集:進化生物学)"学術月報. 55. 63-65 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Nishino J., Tajima F.: "Effect of dominance on heterozygosity and the fixation probability in a subdivided population"Genes and Genetic Systems. 79. 41-48 (2004)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] 田嶋 文生: "集団遺伝学(昆虫学大辞典:三橋淳編)"朝倉書店. 7 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Innan, H., Tajima, F: "A statistical test for the difference in the amounts of DNA variation between two populations."Genetical research. 80(1). 15-25 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Teshima, K.M, Tajima, F.: "The effect of migration during the divergence."Theoretical Population Biology. 62(1). 81-95 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Tajima, F.: "Gene genealogy and its problems (in Japanese)"Gakujitsu-geppo. 55(12). 63-65 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Tajima, F.: "Population Genetics"Dictionary of Insect (edited by J.Mitsuhashi) (Asakura shoten in Japanese). 697. 697-703 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Nishino, J., Tajima, F.: "Effect of dominance on heterozygosity and the fixation probability in a subdivided population"Genes and Genetic Systems. 79(1). 41-48 (2004)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Jo NISHINO: "Effect of dominance on heterozygosity and the fixation probability in a subdivided population"Genes and Genetic Systems. in press. (2004)

    • Related Report
      2003 Annual Research Report
  • [Publications] 三橋淳: "昆虫学大事典"朝倉書店. 1220 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] INNAN, Hideki: "A statisfical test for the difference in the amount of DNA variation between two populations"Genetical Reseach. 80. 15-25 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] TESHIMA, Kosuke, M: "The effect of migration during the divergence"Theoretical Population Biology. 62. 81-95 (2002)

    • Related Report
      2002 Annual Research Report

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Published: 2001-04-01   Modified: 2016-04-21  

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