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Molecular evolutionary study on the amphibian mitochondrial genomes

Research Project

Project/Area Number 13839012
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field 生物多様性・分類
Research InstitutionHIROSHIMA UNIVERSITY

Principal Investigator

SUMIDA Masayuki  Hiroshima University, Graduate School of Science, Professor, 大学院・理学研究科, 教授 (10163057)

Project Period (FY) 2001 – 2003
Project Status Completed (Fiscal Year 2003)
Budget Amount *help
¥3,700,000 (Direct Cost: ¥3,700,000)
Fiscal Year 2003: ¥600,000 (Direct Cost: ¥600,000)
Fiscal Year 2002: ¥800,000 (Direct Cost: ¥800,000)
Fiscal Year 2001: ¥2,300,000 (Direct Cost: ¥2,300,000)
Keywordsmitochondrial DNA genome / complete nucleotide sequence / gene arrangement / molecular evolution / Rana nigromaculara / Buergeria buergeri / amphibians / 両生類 / ヒキガエル類 / 種分化 / 系統進化
Research Abstract

In this study we determined the complete nucleotide sequences of the mitochondrial DNA of the ranid frog Rana nigromaculata and the rhacophorid frog Buergeria buergeri. The gene content, nucleotide composition, and colon usage of these frogs conformed to those of typical vertebrate patterns. However, due to an accumulation of lengthy repetitive sequences into the D-loop region, these species possess the large mitochondrial genomes among all the vertebrates examined so far (Rana nigromaculata, 17,804 bp ; Buergeria buergeri, 19,959 bp). In a comparison of gene organizations among amphibian species (Xenopus, salamanders and a caecilian), the positioning of four tRNA genes and the ND5 gene in the mtDNA of B. buergeri diverged from the common vertebrate gene arrangement shared in Xenopus, salamander and caecilian. The unique positions of the tRNA genes in B. buergeri are shared by ranid frogs, indicating that the rearrangements of the tRNA genes occurred in a common ancestral lineage of ranids and rhacophorids. On the other hand, the novel position of the ND5 gene seemed to have arisen in a lineage leading to rhacophorids (and other closely related taxa) after ranid divergence. Phylogenetic analysis based on nucleotide sequence data of all mitochondrial genes also supported the gene rearrangement pathway

Report

(4 results)
  • 2003 Annual Research Report   Final Research Report Summary
  • 2002 Annual Research Report
  • 2001 Annual Research Report
  • Research Products

    (23 results)

All Other

All Publications (23 results)

  • [Publications] Sumida, Masayuki: "Complete nucleotide sequence and gene rearrangement of the mitochondrial genome of the Japanese pond frog Rana nigromaculata"Genes & Genetic Systems. 76(5). 311-325 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Sumida, Masayuki: "Inter-and intraspecific evolutionary relationships of the rice frog Rana limnocharis and the allied species R.cancrivora, inferred from crossing experiments and mitochondrial DNA sequences of the 12S and 16S rRNA genes"Molecular Phylogenetics and Evolution. 25(2). 293-305 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Khan, Md.Mukhlesur Rahman: "Genetic variation of frogs in Bangladesh using allozyme markers"Bangladesh J.Fisheries. 25(1-2). 35-46 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Sumida, Masayuki: "Reproductive isolating mechanisms and molecular phylogenetic relationships among brown frogs distributed in the Palearctic region"Zoological Science. 20(5). 567-580 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Sumida, Masayuki: "Geographic variability in expression of the sex-linked AAT-1 gene of the bell-ring frog, Buergeria buergeri"Journal of Experimental Zoology. 302B(2). 182-194 (2004)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Sumida, Masayuki: "Sequencing and analysis of the internal transcribed spacers (ITSs) and coding regions in the EcoR I fragment of the ribosomal DNA of the Japanese pond frog Rana nigromaculata"Genes & Genetic Systems. 79(2)(In press). (2004)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Sano, Naomi: "Complete nucleotide sequence and gene rearrangement of the mitochondrial genome of the bell-ring frog Buergeria buergeri (family Rhacophoridae)"Genes & Genetic Systems. 79(3)(In press). (2004)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Sumida, Masayuki: "Complete nucleotide sequence and gene rearrangement of the mitochondrial genome of the Japanese pond frog Rana nigromaculata"Genes & Genetic Systems. 76(5). 311-325 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Sumida, Masayuki: "Inter-and infraspecific evolutionary relationships of the rice frog Rana limnocharis and the allied species R, cancrivora, inferred from crossing experiments and mitochondrial DNA sequences of the 12S and 16S rRNA genes"Molecular Phylogenetics and Evolution. 25(2). 293-305 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Khan, Md.: "Mukhlesur Rahman, Genetic variation of frogs in Bangladesh using allozyme markers"Bangladesh J.Fisheries. 25(1-2). 35-46 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Sumida, Masayuki: "Reproductive isolating mechanisms and molecular phylogenetic relationships among brown frogs distributed in the Palearctic region"Zoological Science. 20(5). 567-580 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Sumida, Masayuki: "Geographic variability in expression of the sex-linked AAT-1 gene of the bell-ring frog, Buergeria buergeri"Journal of Experimental Zoology. 302B(2). 182-194 (2004)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Sumida, Masayuki: "Sequencing and analysis of the internal transcribed spacers (ITSs) and coding regions in the EcoR I fragment of the ribosomal DNA of the Japanese pond frog Rana nigromaculata"Genes & Genetic Systems. 79(2) (In press). (2004)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Sano, Naomi: "Complete nucleotide sequence and gene rearrangement of the mitochondrial genome of the bell-ring frog Buergeria buergeri (family Rhacophoridae)"Genes & Genetic Systems. 79(3) (In press). (2004)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Sumida, Masayuki: "Complete nucleotide sequence and gene rearrangement of the mitochondrial genome of the Japanese pond frog Rana nigromaculata"Genes & Genetic Systems. 76(5). 311-325 (2001)

    • Related Report
      2003 Annual Research Report
  • [Publications] Sumida, Masayuki: "Inter- and intraspecific evolutionary relationships of the rice frog Rana limnocharis and the allied species R. cancrivora inferred from crossing experiments and mitochondrial DNA sequences of the 12S and 16S rRNA genes"Molecular Phylogenetics and Evolution. 25(2). 293-305 (2002)

    • Related Report
      2003 Annual Research Report
  • [Publications] Sumida, Masayuki: "Reproductive isolating mechanisms and molecular phylogenetic relationships among brown frogs distributed in the Palearctic region"Zoological Science. 20(5). 567-580 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Sumida, Masayuki: "Geographic variability in expression of the sex-linked AAT-1 gene of the bell-ring frog, Buergeria buergeri"Journal of Experimental Zoology. 302B(In press). (2004)

    • Related Report
      2003 Annual Research Report
  • [Publications] 住田正幸: "カエルの遺伝研究最先端(松井正文編)"「これからの両棲類学」裳華房(印刷中). (2004)

    • Related Report
      2003 Annual Research Report
  • [Publications] Sumida M. et al.: "Inter-and intraspecific evolutionary relationships of the rice frog Rana limnocharis and the allied species R. cancrivora, inferred from crossing experiments and mitochondrial DNA sequences of the 12S and 16S rRNA genes"Molecular Phylognetics and Evolution. 25. 293-305 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Sumida M. et al.: "Reproductive isolating mechanisms and molecular phylogenetic relationships among Palearctic and Oriental brown frogs"Zoological Science. 20(5)(in press). (2003)

    • Related Report
      2002 Annual Research Report
  • [Publications] Sumida, Masayuki: "Complete nucleotide sequence and gene rearrangement of the mitochondrial genome of the Japanese pond frog Rana nigromaculata"Genes & Genetic Systems. 76(5). 311-325 (2001)

    • Related Report
      2001 Annual Research Report
  • [Publications] Sumida, Masayuki: "Reproductive isolating mechanisms and molecular phylogenetic relationships among Palearctic brown frogs"Copeia. 2002(in press). (2002)

    • Related Report
      2001 Annual Research Report

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Published: 2001-04-01   Modified: 2016-04-21  

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