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RNA Dynamism in Development and Regeneration

Research Project

Project/Area Number 14035242
Research Category

Grant-in-Aid for Scientific Research on Priority Areas

Allocation TypeSingle-year Grants
Review Section Biological Sciences
Research InstitutionKyoto University (2005-2006)
The Institute of Physical and Chemical Research (2002-2004)

Principal Investigator

AGATA Kiyokazu  Kyoto University, Department of Biophysics, Professor (70167831)

Co-Investigator(Kenkyū-buntansha) NAKAMURA Akira  Center for Developmental Biology, Germline Development, Team Leader (90323245)
Project Period (FY) 2002 – 2006
Project Status Completed (Fiscal Year 2006)
Budget Amount *help
¥64,400,000 (Direct Cost: ¥64,400,000)
Fiscal Year 2006: ¥13,300,000 (Direct Cost: ¥13,300,000)
Fiscal Year 2005: ¥13,300,000 (Direct Cost: ¥13,300,000)
Fiscal Year 2004: ¥12,600,000 (Direct Cost: ¥12,600,000)
Fiscal Year 2003: ¥12,600,000 (Direct Cost: ¥12,600,000)
Fiscal Year 2002: ¥12,600,000 (Direct Cost: ¥12,600,000)
KeywordsRNA / translation / stem cell / germ cell / planarian / Drosophila / chromatid body / germ plasm / ショウジョウバエ / RNAタンパク質複合体 / クロマトイド小体 / 生殖顆粒 / 再生 / DEAD box型RNA helicaae
Research Abstract

To elucidate RNA regulation in stem cells and germ cells, we isolated genes encoding RNA binding proteins from planarian stem cells and Drosophila germ cells, respectively, and investigated their functions genetically and biochemically. In Drosophila, we have succeeded in demonstrating translational regulation in germ cells. However, in planarian, some RNA binding proteins were accumulated in the cytoplasm but others in the nucleus. When we analyzed their function by the RNA interference method, we obtained diverse phenotypes, from decrease of expression of other genes to elimination of stem cells. These results suggested that RNA regulation is involved in many different steps of stem cell regulation.

Report

(6 results)
  • 2006 Annual Research Report   Final Research Report Summary
  • 2005 Annual Research Report
  • 2004 Annual Research Report
  • 2003 Annual Research Report
  • 2002 Annual Research Report
  • Research Products

    (29 results)

All 2007 2006 2005 2004 2002 Other

All Journal Article (23 results) (of which Peer Reviewed: 13 results) Presentation (1 results) Book (1 results) Publications (4 results)

  • [Journal Article] DjCBC-1, a Conserved DEAD Box RNA Helicase of the RCK/p54/Me31B Family, Is a Component of RNA-Protein Complexes in Planarian Stem Cells and Neurons2007

    • Author(s)
      Maki Yoshida-Kashikawa
    • Journal Title

      Developmental Dynamics 236

      Pages: 3436-3450

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Characterization and categorization of fluorescence activated cell sorted planarian stem cells by ultrastructural analysis2007

    • Author(s)
      Sayaka Higuchi
    • Journal Title

      Develop. Growth Differ 49

      Pages: 571-581

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Isolation of planarian X-ray-sensitive stem cells by fluorescence-activated cell sorting2006

    • Author(s)
      Tesutaro Hayashi
    • Journal Title

      Develop. Growth Differ 48

      Pages: 371-379

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Two different evolutionary origins of stem cell systems and their molecular basis2006

    • Author(s)
      Kiyokazu Agata
    • Journal Title

      Seminars in Cell & Developmental Biology 17

      Pages: 503-509

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Identification and origin of the germline stem cells as revealed by the expression of nanos-related gene in planarians2006

    • Author(s)
      Kimihiro Sato
    • Journal Title

      Develop. Growth Differ 48

      Pages: 615-628

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Isolation of planarian X-ray-sensitive stem cells by fluorescence-activated cell sorting2006

    • Author(s)
      T.Hayashi, M.Asami, S.Higuchi, N.Shibata, K.Agata
    • Journal Title

      Dev.Growth Differ. 48

      Pages: 371-379

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Two different evolutionary origins of stem cell systems and their molecular basis2006

    • Author(s)
      K.Agata, E.Nakajima, N.Funayama, N.Shibata, Y.Saito, Y.Umesno
    • Journal Title

      Seminars in Cell & Developmental Biology 17

      Pages: 503-509

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Identification and origin of the germline stem cells as revealed by the expression of nanos-related gene in planarians2006

    • Author(s)
      K.Sato, N.Shibata, H.Orii, R.Amikura, T.Sakurai, K.Agata, S.Kobayashi, K.Watanabe
    • Journal Title

      Dev.Growth Differ. 48

      Pages: 615-628

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Crystal structure of the N-terminal RecA-like domain of a DEAD-box RNA helicase, the Dugesia japonica vasa-like gene B protein2005

    • Author(s)
      Kazuki Kurimoto
    • Journal Title

      Journal of Structural Biology 150

      Pages: 58-68

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] A conserved RNA-protein complex component involved in physiological germline apoptosis regulation in C. elegans2005

    • Author(s)
      Peter R. Boag
    • Journal Title

      Development 132

      Pages: 4975-4986

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] A conserved RNA-protein complex component involved in physiological germline apoptosis regulation in C. elesrans2005

    • Author(s)
      Peter R. Boag
    • Journal Title

      Development 132

      Pages: 4975-4986

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Crystal structure of the N-terminal RecA-like domain of a DEAD-box RNA helicase, the Dugesia japonica vasa -like gene B protein.2005

    • Author(s)
      Kazuki Kurimoto, Yutaka Muto, Naomi Obayashi, Takaho Terada, Mikako Shirouzu, Takashi Yabuki, Masaaki Aiki, Eiko Seki, Takayoshi Matsuda, Takanori Kigawa, Hiromi Okumura, Akiko Tanaka, Norito Shibata, Maki Kashikawa, Kiyokazu Agata, Shigeyuki Yokoyama
    • Journal Title

      Journal of Structural Biology 150

      Pages: 58-68

    • Related Report
      2005 Annual Research Report
  • [Journal Article] A conserved RNA-protein complex component involved in physiological germline apoptosis regulation in C.elegans.2005

    • Author(s)
      Boag PR, Nakamura A, Blackwell TK.
    • Journal Title

      Development. 132(22)

      Pages: 4975-4986

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Germ cell-autonomous Wunen2 is required for germline development in Drosophila embryos2004

    • Author(s)
      Kazuko Hanyu-Nakamura
    • Journal Title

      Development 131

      Pages: 4545-4553

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Drosophila Cup Is an eIF4E Binding Protein that Associates with Bruno and Regulates oskar mRNA Translation in Oogenesis2004

    • Author(s)
      Akira Nakamura
    • Journal Title

      Developmental Cell 6

      Pages: 69-78

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Drosophila Cup Is an eIF4E Binding Protein that Associates with Bruno and Regulates oskar mRNA Translation in Oogenesis.2004

    • Author(s)
      Akira Nakamura
    • Journal Title

      Developmental Cell 6

      Pages: 69-78

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Germ cell-autonomous Wunen2 is required for germline development in Drosophila embryos2004

    • Author(s)
      Hanyu-Nakamura Kazuko
    • Journal Title

      Development 131

      Pages: 4545-4553

    • Related Report
      2004 Annual Research Report
  • [Journal Article] VASA Localization Requires the SPRY-Domain and SOCS-Box Containing Protein, GUSTAVUS2002

    • Author(s)
      Sylvia Styhler
    • Journal Title

      Developmental Cell 3

      Pages: 865-876

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] A Role for the Drosophila Fragile X-Related Gene in Circadian Output2002

    • Author(s)
      Shunsuke B. Inoue
    • Journal Title

      Current Biology 12

      Pages: 1331-1335

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Identification of a transcriptional regulatory region for germline-specific expression of vasa gene in Drosophila melanogaster2002

    • Author(s)
      Hisako Sano
    • Journal Title

      Mechanisms of Development 112

      Pages: 129-139

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] A Role for the Drosophila Fragile X-Related Gene in Circa dian Output2002

    • Author(s)
      Shunsuke B. Inoue
    • Journal Title

      Current Biology 12

      Pages: 1331-1335

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Expression and functional analysis of musashi-like genes in planarian CNS regeneration.

    • Author(s)
      Sayaka Higuchi
    • Journal Title

      Mechanisms of Development (in press)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
    • Peer Reviewed
  • [Journal Article] Expression and functional analysis of musashrlike genes in planarian CNS regeneration

    • Author(s)
      Sayaka Higuchi
    • Journal Title

      Mechanisms of Development (in press)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Presentation] プラナリア幹細胞システムにおけるmusashiの機能解析2006

    • Author(s)
      樋口, 清香
    • Organizer
      第8回RNAミーティング
    • Place of Presentation
      兵庫県立淡路夢舞台国際会議場
    • Year and Date
      2006-07-18
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Book] 蛋白質核酸酵素Vol.51 No.16 RNAと生命2006

    • Author(s)
      樋口, 清香
    • Publisher
      共立出版株式会社
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Publications] Akira Nakamura, Keiji Sato, Kazuko Nakamura: "Drosophila Cup Is an eIF4E Binding Protein that Associates with Bruno and Regulates oskar mRNA Translation in Oogenesis."Dev.Cell. 6. 69-78 (2004)

    • Related Report
      2003 Annual Research Report
  • [Publications] Styhler, S., Nakamura, A., Lasko, P.: "VASA localization requires the SPRY-domain and SOCS-box containing protein, GUSTAVUS"Dev. Cell. 3. 865-876 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Inoue, B.S., et al.: "A role for the Drosophila fragile X-related gene in circadian output"Curr. Biol.. 12. 1331-1335 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Sano, H., Nakamura, A., Kobayashi, S.: "Identification of a transcriptional regulatory region for germline-specific expression of vasa in Drosophila melanogaster"Mech. Dev.. 112. 129-139 (2002)

    • Related Report
      2002 Annual Research Report

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Published: 2002-04-01   Modified: 2018-03-28  

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