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Elucidation of bio-molecule recognition using semiconductor surface and its application to bioelectronics

Research Project

Project/Area Number 14205007
Research Category

Grant-in-Aid for Scientific Research (A)

Allocation TypeSingle-year Grants
Section一般
Research Field 表面界面物性
Research InstitutionTohoku University

Principal Investigator

NIWANO Michio  Tohoku University, Research Institute of Electrical Communication, Professor, 電気通信研究所, 教授 (20134075)

Co-Investigator(Kenkyū-buntansha) ISHII Hisao  Tohoku University, Research Institute of Electrical Communication, Associate Professor, 電気通信研究所, 助教授 (60232237)
KIMURA Yasuo  Tohoku University, Research Institute of Electrical Communication, Research Associate, 電気通信研究所, 助手 (40312673)
Project Period (FY) 2002 – 2004
Project Status Completed (Fiscal Year 2004)
Budget Amount *help
¥54,600,000 (Direct Cost: ¥42,000,000、Indirect Cost: ¥12,600,000)
Fiscal Year 2004: ¥9,490,000 (Direct Cost: ¥7,300,000、Indirect Cost: ¥2,190,000)
Fiscal Year 2003: ¥17,030,000 (Direct Cost: ¥13,100,000、Indirect Cost: ¥3,930,000)
Fiscal Year 2002: ¥28,080,000 (Direct Cost: ¥21,600,000、Indirect Cost: ¥6,480,000)
KeywordsDNA / hybridization / infrared spectroscopy / bioelectronics / cell / apotosis / 半導体表面 / 分子認識 / DNAチップ / 脂質分子 / 生体機能
Research Abstract

In this study, we aimed at giving a function of molecule recognition to a semiconductor surface by forming structurally controlled organic thin film on it and by detecting adsorption state of biomolecules and supramolecules which adsorb onto it using infrared spectroscopy.
We need to use heavy water as substitute for ordinary water because DNA, protein, and cells have IR absorption peaks at the same region as the scissors mode of ordinary water. We cannot use general database because of deuterium substituion reaction at part of fuction groups when heavy water is used. Thus, we made new one by comparing results of experimental IR spectra and an ab-initio calculation. We demonstrated (1) highly sensitive detection of DNA hybridization and (2) elucidation of hybridization of DNA immobilized on silicon surface. We found that hybridization reaction strongly influences the C=O stretching vibration mode of bases by comparing IR spectral changes with the ab-initio calculation. We established electrophoresis in a solution and confirmed that electrical potential effectively draws DNA molecules up to silicon surface to enhance its sensitivity. An IR spectrum of drawn DNA molecules differed from one of floating DNA. This spectral change is attributed to protonization of bases. For the first time, we found that electrochemically reaction near the electrode can induce this phenomenon which is a well-known reaction depending on pH of a DNA solution. We demonstrated (5) highly sensitive detection of DNA hybridization using a porous thin film such as porous alumina and porous silicon. Furthermore, we started developing a method of analyzing functions of cells and we observed "apotosis" which is well-known as a designed death using IR spectroscopy and we could trace chemical changes in a cell until it resulted in the cell death. We now promote this study.

Report

(4 results)
  • 2004 Annual Research Report   Final Research Report Summary
  • 2003 Annual Research Report
  • 2002 Annual Research Report
  • Research Products

    (30 results)

All 2005 2004 2003 Other

All Journal Article (18 results) Publications (12 results)

  • [Journal Article] Label-free detection and classification of DNA by surface vibration spectroscopy in conjugation with electrophoresis2005

    • Author(s)
      Ko-ichiro Miyamoto
    • Journal Title

      Applied Physics Letter 86

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Label-free detection and classification of DNA by surface vibration spectroscopy in conjugation with electrophoresis2005

    • Author(s)
      Ko-ichiro Miyamoto
    • Journal Title

      Applied Physics Letter Vol.86

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Adsorption of naphthalene on a Si(100)-2 x 1 surface investigated by infrared spectroscopy2005

    • Author(s)
      K.Okamura et al.
    • Journal Title

      Surface Science 576

      Pages: 45-55

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Oxidation of the hydrogen terminated silicon surfaces by oxygen plasma investigated by in-situ infrared spectroscopy2005

    • Author(s)
      M.Shinohara et al.
    • Journal Title

      Thin Solid Films 475

      Pages: 128-132

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Label-free detection and classification of DNA by surface vibration spectroscopy in conjugation with electrophoresis2005

    • Author(s)
      K.Miyamoto et al.
    • Journal Title

      Applied Physics Letters 86

      Pages: 53902-53903

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Investigation of formation processes of an anodic porous alumina film on a silicon substrate2004

    • Author(s)
      Hirokazu Shiraki
    • Journal Title

      Applied Surface Science 237

      Pages: 369-373

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Investigation of formation processes of an anodic porous alumina film on a silicon substrate2004

    • Author(s)
      Hirokazu Shiraki
    • Journal Title

      Applied Surface Science Vol.237

      Pages: 369-373

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Investigation of formation processes of an anodic porous alumina film on a silicon substrate2004

    • Author(s)
      H.Shiraki et al.
    • Journal Title

      Applied Surface Science 237

      Pages: 369-373

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Adsorption of cata-condensed aromatics on a Si(100)-2 x 1 surface investigated by infrared absorption spectroscopy2004

    • Author(s)
      K.Okamura et al.
    • Journal Title

      Applied Surface Science 237

      Pages: 439-443

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Plasma oxidation process of silicon surfaces investigated by infrared spectroscopy2003

    • Author(s)
      M.Shinohara et al.
    • Journal Title

      Journal of Advanced Oxidation Technologies 8

      Pages: 41-46

    • Related Report
      2004 Annual Research Report
  • [Journal Article] DETECTION OF DNA HYBRIDIZATION ON POROUS BY INFRARED SPECTROSCOPY : APPLICATION TO BIOSENSING

    • Author(s)
      Ryo-taro Yamaguchi
    • Journal Title

      Proceedings of 2004 Joint International Meeting of The Electrochemical Society (in press)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] 顕微赤外分光法によるポーラスシリコン表面上におけるDNA分子の検出

    • Author(s)
      山口僚太郎
    • Journal Title

      表面化学 (投稿中)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] 多重内部反射型赤外吸収分光法によるDNAハイブリダイゼーションの液中その場観察

    • Author(s)
      宮本浩一郎
    • Journal Title

      表面化学 (投稿中)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] In-situ, real-time infrared spectroscopy study of formation of porous anodic alumina on Si

    • Author(s)
      Yasuo Kimura
    • Journal Title

      The Journal of The Electrochemical Society (submitted)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] DETECTION OF DNA HYBRIDIZATION ON POROUS BY INFRARED SPECTROSCOPY : APPLICATION TO BIOSENSING

    • Author(s)
      Ryo-taro Yamaguchi
    • Journal Title

      Proceedings of 2004 Joint International Meeting of The Electrochemical Society (in press)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Detection of DNA molecules on porous Si surfaces by infrared spectromicroscopy

    • Author(s)
      Ryo-taro Yamaguchi
    • Journal Title

      Journal of The Surface Science Society of Japan (Submitted)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] In-situ observation of DNA hybridization in aqueous solution by infrared absorption spectroscopy in the multiple internal reflection geometry

    • Author(s)
      Ko-ichiro Miyamoto
    • Journal Title

      Journal of The Surface Science Society of Japan (Submitted)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] In-situ, real-time infrared spectroscopy study of formation of porous anodic alumina on Si

    • Author(s)
      Yasuo Kimura
    • Journal Title

      The Journal of Electrochemical Society (Submitted)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Publications] 庭野道夫: "半導体表面における水素の挙動-赤外分光解析-"Journal of Vacuum Society of Japan (真空). 46・8. 600-606 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Satoshi Ogawa: "Carrier injection characteristics in Organic Field Effect Transistors Studied by Displacement Current Measurement"Japanese Journal of Applied Physics. 42. L1275-L1273 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Masanori Shinohara et al.: "Behavior of hydride species on Si surface during methane plasma irradiation investigated by in-situ infrared spectroscopy"Thin Solid Films. 435. 13-18 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Masanori Shinohara et al.: "Interaction of hydrogen-terminated Si(100), (110), and (111) surfaces with hydrogen plasma investigated by in situ real-time infrared absorption spectroscopy"Journal of Vacuum Science & Technology A. 21・1. 25-31 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] 渡辺隼人: "Si(100)表面上のベンゼン分子吸着過程"表面科学. 24・2. 98-104 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] 木村康男: "多重内部反射型赤外吸収分光法によるシリコン表面の電気化学エッチング過程の"その場"観察"表面科学. 25・2. 82 (2004)

    • Related Report
      2003 Annual Research Report
  • [Publications] 渡辺 隼人: "Si(100)表面上のベンゼンの分子吸着過程"表面科学. 24. 36-42 (2003)

    • Related Report
      2002 Annual Research Report
  • [Publications] Masanori Shinohara: "Interaction of hydrogen-terminated Si(100), (110), and (111) surfaces with hydrogen plasma investigated by in situ real-time infrared absorption spectroscopy"Journal of Vacuum Science and Technology. A21. 25-31 (2003)

    • Related Report
      2002 Annual Research Report
  • [Publications] Masanori Shinohara: "Formation and decomposition of Si hydrides during adsorption of Si_2H_6 onto Si(100)(2×1)"Physical Review B. 65. 075319-1-075319-7 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Masanori Shinohara: "Infrared spectroscopy study of adsorption of silane on Si(001)"Surface Science. 502-503. 96-101 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Masanori Shinohara: "Infrared Reflection Spectroscopic Investigation of Adsorption of SiH_x(CH_3)_<4-x> on Si surfaces"Electronics and Communications in Japan Part 2. 85. 59-65 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] 庭野 道夫: "半導体表面・界面反応の赤外分光観察"応用物理. 71. 1143-1147 (2002)

    • Related Report
      2002 Annual Research Report

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Published: 2002-04-01   Modified: 2016-04-21  

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