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The analysis of gene expressions related to yield in rice bared on genome information

Research Project

Project/Area Number 14206004
Research Category

Grant-in-Aid for Scientific Research (A)

Allocation TypeSingle-year Grants
Section一般
Research Field 作物学
Research InstitutionThe University of Tokyo

Principal Investigator

OHSUGI Ryu  The University of Toyo, Graduate school of Agriculture and Life Sciences, Professor, 大学院農学生命科学研究科, 教授 (40343107)

Co-Investigator(Kenkyū-buntansha) YAMAGISHI Tohru  The University of Tokyo, Graduate school of Agriculture and Life Sciences, Associate Professor, 大学院農学生命科学研究科, 助教授 (50143409)
SASAKI Haruto  The University of Tokyo, Graduate school of Agriculture and Life Sciences, Assistant, 大学院農学生命科学研究科, 助手 (60225886)
廣瀬 竜郎  独法農業技術研究機構 北陸農業研究センター, 主任研究官
石丸 健  独法農業生物資源研究所 生理機能研究グループ, 主任研究官
高橋 咲子  独法農業生物資源研究所, 生理機能研究グループ, 研究員
Project Period (FY) 2002 – 2004
Project Status Completed (Fiscal Year 2004)
Budget Amount *help
¥51,090,000 (Direct Cost: ¥39,300,000、Indirect Cost: ¥11,790,000)
Fiscal Year 2004: ¥12,350,000 (Direct Cost: ¥9,500,000、Indirect Cost: ¥2,850,000)
Fiscal Year 2003: ¥12,090,000 (Direct Cost: ¥9,300,000、Indirect Cost: ¥2,790,000)
Fiscal Year 2002: ¥26,650,000 (Direct Cost: ¥20,500,000、Indirect Cost: ¥6,150,000)
KeywordsRice / Yield / Gene expression / Macroarray / Superior caryopses / Inferior caryopses / Rice genome / Introgression lines / マクロアレイ / QTL解析 / 登熟 / 炭素代謝 / 品種間差 / イネ収量関連形質 / 強勢頴果と弱勢頴果 / 網羅的遺伝子解析
Research Abstract

The object of this research is to elucidate some factors responsible for high yield in rice and its varietal differences analyzing comprehensively gene expressions related to yield in rice and quantitative trait loci (QTL).
(1)There were large differences in gene expression profile of some enzymes related to carbohydrate metabolism between superior and inferior caryopses of rice and there differences were closely associated with developmental stage of endosperm. (2)Some genes of storage proteins were especially expressed in superior caryopses and, on the other hand, some genes encoding glycine-rich proteins were highly expressed in inferior caryopses based on the analysis using cDNA libraries which were developed with caryopses obtained at temporarily after flowering. (3)Macmarray analysis of 296 genes involved in carbohydrate metabolism showed that there were two types of genes; the one was expressed highly during the early stage of caryopsis development, the other was expressed highly during the middle stage. (4) Several introgression lines which showed significant differences in the traits related to culm length, panicle number chlorophyll content and specific leaf weight from Koshihikari were found in 39 introgression lines with a chromosome segment of Kasalath, in the genetic background of Koshihikari.

Report

(4 results)
  • 2004 Annual Research Report   Final Research Report Summary
  • 2003 Annual Research Report
  • 2002 Annual Research Report
  • Research Products

    (13 results)

All 2005 2004 2003 Other

All Journal Article (11 results) Publications (2 results)

  • [Journal Article] Expression patterns of genes encoding carbohydrate-metabolizing enzymes and their relation to grain filling in rice (Oryza sativa L.) : comparison of caryopses located at different positions in a panicle.2005

    • Author(s)
      Ishimaru T., Hirose, T.Matsuda, A.Goto, K.Takahashi, H.Sasaki, T.Terao, R.Ishii, R.Ohsugi, T.Yamagishi
    • Journal Title

      Plant Cell Physiol. 46

      Pages: 620-628

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Temporal and spatial variations of carbohydrate content in rice leaf sheath and their varietal differences.2005

    • Author(s)
      Hai Yan He, M.Koike, T.Ishimaru, R.Ohsugi, T.Yamagishi
    • Journal Title

      Plant Production Science 8

      Pages: 546-552

    • NAID

      110002961793

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Expression patterns of genes encoding carbohydrate-metabolising enzyme and their relation to grain filling in rice (Oryza sativa L.) : comparison of caryopses located at different positions in a panicle2005

    • Author(s)
      Ishimaru, T., T.Hirose, T.Matsuda, A.Goto, K.Takahashi, H.Sasaki, T.Terao, R.Ishii, R.Ohsugi, T.Yamagishi
    • Journal Title

      Plant Cell Physiol 46

      Pages: 620-628

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Temporal and spatial variations of carbohydrate content in rice leaf sheath and their. varietal differences.2005

    • Author(s)
      Hai Yan He, M.Koike, T.Ishimaru, R.Ohsugi, T.Yamagishi
    • Journal Title

      Plant Production Science 8

      Pages: 546-552

    • NAID

      110002961793

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Expression patterns of genes encoding carbohydrate-metabolizing enzymes and their relation to grain filling in rice (Oryza sativa L.).2005

    • Author(s)
      Ishimaru, T. et al.
    • Journal Title

      Plant Cell and Physiology

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Carbon metabolism to improve sink and source function.2004

    • Author(s)
      Ohsugi, R.
    • Journal Title

      Rice is life : scientific perspectives for the 21th century Proceedings of World Rice Research Conference.

      Pages: 116-118

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Carbon metabolism to improve sink and source function2004

    • Author(s)
      Ohsugi, R.
    • Journal Title

      Rice is life : scientific perspectives for the 21th century, Proceedings of World Rice Research Conference

      Pages: 116-118

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Morphological development of rice caryopses located at the different positions in a panicle from early to middle stage of grain fillin2003

    • Author(s)
      Ishimaru, T., T.Matsuda, R.Ohsugi, T.Yamagishi
    • Journal Title

      Functional Plant Biol. 30

      Pages: 1139-1149

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] シンク・ソースの分子機構から作物の収量向上を考える2003

    • Author(s)
      大杉 立
    • Journal Title

      化学と生物

      Pages: 366-373

    • NAID

      130003634373

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Morphological development of rice caryopses located at the different Position in a panicle from early to middle stage of grain filling.2003

    • Author(s)
      Ishimaru, T., T.Matsuda, R.Ohsugi, T.Yamagishi
    • Journal Title

      Functional.Plant Biol. 30

      Pages: 1139-1149

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Molecular approach to yield of crop focusing on sink/source relationship. (in Japanese)2003

    • Author(s)
      R.Ohsugi
    • Journal Title

      Kagaku to Seibotu

      Pages: 366-373

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Publications] Ishimaru T., T.Matsuda, R.Ohsugi, T.Yamagishi: "Morphological development of rice caryopses located at the different positions in a panicle from early to middle stage of grain filling"Functional Plant Biology. 30. 1139-1149 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] 大杉 立: "ショ糖の転流に関する分子機構の解明と作物への応用"化学と生物. (印刷中). (2003)

    • Related Report
      2002 Annual Research Report

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Published: 2002-04-01   Modified: 2016-04-21  

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