• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

Study on molecular mechanisms of uptake, conversion, and excretion of lipids in yeast.

Research Project

Project/Area Number 14206010
Research Category

Grant-in-Aid for Scientific Research (A)

Allocation TypeSingle-year Grants
Section一般
Research Field 応用微生物学・応用生物化学
Research InstitutionThe University of Tokyo

Principal Investigator

OHTA Akinori  The University of Tokyo, Graduate School of Agricultural and Life Sciences, Professor, 大学院・農学生命科学研究科, 教授 (30125885)

Co-Investigator(Kenkyū-buntansha) FUKUDA Ryouichi  The University of Tokyo, Graduate school of Agricultural and Life Sciences, Assistant, 大学院・農学生命科学研究科, 助手 (50323481)
Project Period (FY) 2002 – 2004
Project Status Completed (Fiscal Year 2004)
Budget Amount *help
¥53,690,000 (Direct Cost: ¥41,300,000、Indirect Cost: ¥12,390,000)
Fiscal Year 2004: ¥13,000,000 (Direct Cost: ¥10,000,000、Indirect Cost: ¥3,000,000)
Fiscal Year 2003: ¥12,740,000 (Direct Cost: ¥9,800,000、Indirect Cost: ¥2,940,000)
Fiscal Year 2002: ¥27,950,000 (Direct Cost: ¥21,500,000、Indirect Cost: ¥6,450,000)
Keywordslipid / bio-conversion / Saccharomyces cerevisiae / Yarrowia lipolytica / Candida maltosa / cytochrome P450alk / lipid flippase / lipid trafic / Candida Maltosa / Yarrowia lipolytica / cytochrome P450ALK / alkane assimilation / fatty acid ω-oxidation / phospholipid / peroxisome / phospholopids / Saccharormyces cerevisiae / cytochrom P450ALK
Research Abstract

To develop yeast systems for production of useful chemicals from alkanes and fatty acids, it is necessary to study how these natural resources are utilized by yeasts. In this project, we analyzed two yeast species that can utilize n-alkanes and fatty acids as carbon sources, Yarrowia lipolytica and Candida maltosa. Y.lipolytica has a haploid genome of which sequence analysis was completed recently. C.maltosa has a diploid genome and has been used for production of long chain dicarboxylic acids (DCA). We obtained following new results.
1.Y.lipolytica takes up n-hexadecane in an energy dependent manner. This uptake is induced by alkane and repressed by glycerol and by mutations in peroxin genes.
2.The production of long chain DCA by C.maltosa was improved by the increased expression of CmCDR1 gene that encodes an ABC transporter.
3.We identified an alkane-responsive element ARE1 on the promoter of alkane-inducible genes. ARE1 dependent lacZ reporter expression system was constructed and integrated into the Y.lipolytica genome. By mutagenizing the resultant recombinant strain, we obtained one mutant defective in YAS1 gene. The yas1 mutant and Δyas1 did not grow on n-decane but grow on oleic acid. Yas1p is localized in nucleus and has a basic helix loop helix (bHLH) motif. CHIP assay proved that Yas1p-HA bound the ALK1 promoter region. From these results, we concluded that Yas1p is a transcription factor for n-alkane inducible gene expression. Since Yas1p bHLH region has homology to Ino4p bHLH of S.cerevisiae and Ino4p forms heterodimer with Ino2p, another protein with bHLH motif, we identified a gene YAS2 by searching Y.lipolytica genome sequence data and proved that Yas2p binds to Yas1p and is responsible for the alkane-responsible gene expression.

Report

(4 results)
  • 2004 Annual Research Report   Final Research Report Summary
  • 2003 Annual Research Report
  • 2002 Annual Research Report
  • Research Products

    (38 results)

All 2005 2004 2003 2002 Other

All Journal Article (32 results) Publications (6 results)

  • [Journal Article] n-Alkane and Clofibrate, a Peroxisome Proliferator, Activate Transcription of ALK2 Gene Encoding Cytochrome P450a1k2 through Distinct cis-Acting Promoter Elements in Candida maltosa2005

    • Author(s)
      T.Kogure, M.Takagi, A.Ohta.
    • Journal Title

      Biochem. Biophys. Res. Commun. 329

      Pages: 78-86

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] n-Alkane and Clofibrate, a Peroxisome Proliferator, Activate Transcription of ALK2 Gene Encoding Cytochrome P450alk2 through Distinct cis-Acting Promoter Elements in Candida maltosa.2005

    • Author(s)
      T.Kogure, M.Takagi, A.Ohta
    • Journal Title

      Biochem.Biophys.Res.Commun. 329

      Pages: 78-86

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] n-alkane and clofibrate, a peroxisome proliferator, activate transcription of ALK2 gene encoding cytochrome P450alk2 through distinct cis-acting promoter elements in Candida maltosa2005

    • Author(s)
      T.Kogure, M.Takagi, et al.
    • Journal Title

      Biochem.Biophys.Res.Commun. 329

      Pages: 78-86

    • Related Report
      2004 Annual Research Report
  • [Journal Article] A basic helix-loop-helix transcription factor essential for cytochrome P450 in response to alkanes in yeast Yarrowia lipolytica2004

    • Author(s)
      S.Yamagami, D.Morioka, R.Fukuda, A.Ohta.
    • Journal Title

      J. Biol. Chem. 279

      Pages: 22183-22189

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] A Gcn4p homolog is essential for the induction of a ribosomal protein L41 variant responsible for cycloheximide resistance in the yeast Candida maltosa.2004

    • Author(s)
      H.Takaku, E.Mutoh et al.
    • Journal Title

      J. Biol. Chem. 279

      Pages: 23030-23037

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Local exposure of phosphatidylethanolamine on the yeast plasma membrane is implicated in cell polarity2004

    • Author(s)
      K.Iwamoto, S.Kobayashi et al.
    • Journal Title

      Genes to Cells 9

      Pages: 891-903

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] A basic helix-loop-helix transcription factor essential for cytochrome P450 in response to alkanes in yeast Yarrowia lipolytica.2004

    • Author(s)
      S.Yamagami, D.Morioka, R.Fukuda, A.Ohta
    • Journal Title

      J.Biol.Chem. 279

      Pages: 22183-22189

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] A Gcn4p homolog is essential for the induction of a ribosomal protein L41 variant responsible for cycloheximide resistance in the yeast Candida maltosa.2004

    • Author(s)
      H.Takaku, E.Mutoh, Y.Sagehashi, R.Fukuda, H.Horiuchi, K.Ochi, M.Takagi, A.Ohta
    • Journal Title

      J.Biol.chem. 279

      Pages: 23030-23037

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Local exposure of phosphatidylethanolamine on the yeast plasma membrane is implicated in cell polarity.2004

    • Author(s)
      K.Iwamoto, S.Kobayashi, R.Fukuda, M.Umeda, T.Kobayashi, A.Ohta
    • Journal Title

      Genes to Cells 9

      Pages: 891-903

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] A basic helix-loop-helix transcription factor essential for cytochrome P450 in response to alkanes in yeast Yarrowia lipolytica2004

    • Author(s)
      S.Yamagami, D.Morioka, et al.
    • Journal Title

      J.Biol.Chem. 279

      Pages: 22183-22189

    • Related Report
      2004 Annual Research Report
  • [Journal Article] A Gcn4p homolog is essential for the induction of a ribosomal protein L41 variant responsible for cycloheximide resistance in the yeast Candida maltosa2004

    • Author(s)
      H.Takaku, E.Mutoh, et al.
    • Journal Title

      J.Biol.Chem. 279

      Pages: 23030-23037

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Local exposure of phosphatidylethanolamine on the yeast plasma membrane is implicated in cell polarity2004

    • Author(s)
      K.Iwamoto, S.Kobayashi, et al.
    • Journal Title

      Genes to Cell 9

      Pages: 891-903

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Cinnamycin (Ro 09-0198) Promotes Cell Binding and Toxicity by Inducing Transbilayer Lipid Movement2003

    • Author(s)
      A.Makino, T.Baba, et al.
    • Journal Title

      J. Biol. Chem. 278

      Pages: 3204-3209

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Novel Approach to the Improvement of Biphenyl and Polychlorinated Biphenyl Degradation Activity : Promoter Implantation by Homologous Recombination2003

    • Author(s)
      Y.Ohtsubo, M.Shimura et al.
    • Journal Title

      Appl. Emviron. Microbiol. 69

      Pages: 146-153

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Growth temperature downshift induces antioxidant response in Saccharomyces cerevisiae2003

    • Author(s)
      L.Zhang, K.Onda et al.
    • Journal Title

      Biochem. Biophys. Res. Commun. 307

      Pages: 308-314

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Molecular cloning of a phospholipase D gene from Aspergillus nidulans and characterization of its deletion mutants2003

    • Author(s)
      S.Hong, H.Horiuchi, A.Ohta.
    • Journal Title

      FEMS Microbiology Letters. 224

      Pages: 231-237

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] The dual functions of biphenyl-degrading ability of Pseudomonas sp. KKS 102 : energy acquisition and substrate detoxification2003

    • Author(s)
      M.Delawary, Y.Ohtsubo, A.Ohta.
    • Journal Title

      Biosci. Biotechnol. Biochem. 67

      Pages: 1970-1975

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Cinnamycin (Ro 09-0198) Promotes Cell Binding and Toxicity by Inducing Transbilayer Lipid Movement.2003

    • Author(s)
      A.Makino, T.Baba, K.Fujimoto, K.Iwamoto, Y.Yano, N.Terada, S.Ohno, S.B.Sato, A.Ohta, M.Umeda, K.Matsuzaki, T.Kobayashi
    • Journal Title

      J.Biol.Chem. 278

      Pages: 3204-3209

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Novel Approach to the Improvement of Biphenyl and Polychlorinated Biphenyl Degradation Activity : Promoter Implantation by Homologous Recombination.2003

    • Author(s)
      Y.Ohtsubo, M.Shimura, M.Delawary, K.Kimbara, M.Takagi, T.Kudo, A.Ohta, Y.Nagata
    • Journal Title

      Appl.Emviron.Microbiol. 69

      Pages: 146-153

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Growth temperature downshift induces antioxidant response in Saccharomyces cerevisiae2003

    • Author(s)
      L.Zhang, K.Onda, R.Imai, R.Fukuda, H.Horiuchi, A.Ohta
    • Journal Title

      Biochem.Biophys.Res.Commun. 307

      Pages: 308-314

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Molecular cloning of a phospholipase D gene from Aspergillus nidulans and characterization of its deletion mutants.2003

    • Author(s)
      S.Hong, H.Horichi, A.Ohta
    • Journal Title

      FEMS Microbiology Letters. 224

      Pages: 231-237

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] The dual functions of biphenyl-degrading ability of Pseudomonas sp.KKS102 : energy acquisition and substrate detoxification.2003

    • Author(s)
      M.Delawary, Y.Ohtsubo, A.Ohta
    • Journal Title

      Biosci.Biotechnol.Biochem. 67

      Pages: 1970-1975

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Peroxisome deficiency represses the expression of n-alkane-inducible YlALK1 encoding cytochrome P450ALK1 in Yarrowia Iipolytica2002

    • Author(s)
      T.Sumita, T.Iida et al.
    • Journal Title

      FEMS Microbiology Letters 214

      Pages: 31-38

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Employment of human estrogen receptor β ligand-binding domain and co-activator SRC1 nuclear receptor binding domain for the construction of a yeast two hybrid detection system for endocrine disrupters.2002

    • Author(s)
      H.-S.Lee, K.Miyauchi et al.
    • Journal Title

      J. Biochem. 131

      Pages: 399-405

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Pseudohyphal growth in a dimorphic yeast, Candida maltosa, after disruption of C-GCN4 Gene, a homolog of Saccharomyces cerevisiae GCN42002

    • Author(s)
      H.Takaku, H.Horiuchi, et al.
    • Journal Title

      Biosci. Biotechnol. Biochem. 66

      Pages: 1936-1939

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] YlALK1 encoding the cytochrome P450ALK1 in Yarrowia lipolytica is transcriptionally induced by n-alkane through two distinct cis-elements on its promoter.2002

    • Author(s)
      T.Sumita, T.Iida et al.
    • Journal Title

      Biochem. Biophys. Res. Commun. 294

      Pages: 1071-1078

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] A novel membrane protein, Ros3p, is required for phospholipid translocation across the plasma membrane in Saccharomyces cerevisiae2002

    • Author(s)
      U.Kato, K.Emoto et al.
    • Journal Title

      J. Biol. Chem. 277

      Pages: 37855-37862

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Peroxisome deficiency represses the expression of n-alkane-inducible YIALK1 encoding cytochrome P450ALK1 in Yarrowia lipolytica.2002

    • Author(s)
      T.Sumita, T.Iida, A.Hirata, H.Horiuchi, M.Takagi, A.Ohta
    • Journal Title

      FEMS Microbiology Letters 214

      Pages: 31-38

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Employment of human estrogen receptor β ligand-binding domain and co-activator SRC1 nuclear receptor binding domain for the construction of a yeast two hybrid detection system for endocrine disrupters.2002

    • Author(s)
      H.-S.Lee, K.Miyauchi, Y.Nagata, R.Fukuda, S.Sasagawa, H.Endoh, S.Kato, H.Horiuchi, M.Takagi, A.Ohta
    • Journal Title

      J.Biochem. 131

      Pages: 399-405

    • NAID

      10010646486

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Pseudohyphal growth in a dimorphic yeast, Candida maltosa, after disruption of C-GCN4 Gene, a homolog of Saccharomyces cerevisiae GCN4.2002

    • Author(s)
      H.Takaku, H.Horiuchi, M.Takagi, A.Ohta
    • Journal Title

      Biosci.Biotechnol.Biochem. 66

      Pages: 1936-1939

    • NAID

      110002693926

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] YIALK1 encoding the cytochrome P450ALK1 in Yarrowia lipolytica is transcriptionally induced by n-alkane through two distinct cis-elements on its promoter.2002

    • Author(s)
      T.Sumita, T.Iida, S.Yamagami, H.Horiuchi, M.Takagi, A.Ohta
    • Journal Title

      Biochem.Biophys.Res.Commun. 294

      Pages: 1071-1078

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] A novel membrane protein, Ros3p, is required for phospholipid translocation across the plasma membrane in Saccharomyces cerevisiae.2002

    • Author(s)
      U.Kato, K.Emoto, C.Fredriksson, H.Nakamura, A.Ohta, T.Kobayashi, K.Murakami-Murofusi, T.Kobayashi, M.Umeda
    • Journal Title

      J.Biol.Chem. 277

      Pages: 37855-37862

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Publications] Sahyun Hong et al.: "Molecular cloning of a phospholipase D gene from Aspergillus nidulans and characterization of its deletion mutants."FEMS Microbiology Letters. 224. 231-237 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] T.Sumita, T.Iida, et al.: "Peroxisome deficiency represses the expression of n-alkane-inducible YlALK1 encoding cytochrome P450ALK1 in Yarrowia lipolytica"FEMS Microbiology Letters. 214. 31-38 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] H.-S.Lee, K.Miyauchi, et al.: "Employment of human estrogen receptor β ligand-binding domain and co-activator SRC1 nuclear receptor binding domain for the construction of a yeast two hybrid detection system for endocrine disrupters"J.Biochem.. 131. 399-405 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] T.Sumita, T.Iida, et al.: "YlALK1 encoding the cytochrome P450ALK1 in Yarrowia lipolytica is transcriptionally induced by n-alkane through two distinct cis-elements on its promoter"Biochem.Biophys.Res.Commun.. 294. 1071-1078 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] U.Kato, K.Emoto, et al.: "A novel membrane protein, Ros3p, is required for phospholipid translocation across the plasma membrane in Saccharomyces cerevisiae"J.Biol.Chem.. 277. 37855-37862 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] A.Makino, T.Baba, et al.: "Cinnamycin (Ro 09-0198) Promotes Cell Binding and Toxicity by Inducing Transbilayer Lipid Movement"J.Biol.Chem.. 277(in press). (2002)

    • Related Report
      2002 Annual Research Report

URL: 

Published: 2002-04-01   Modified: 2016-04-21  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi