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Nano-arrangement analysis of cellulase complex and its application to methanol production by fixing carbonic acid.

Research Project

Project/Area Number 14206038
Research Category

Grant-in-Aid for Scientific Research (A)

Allocation TypeSingle-year Grants
Section一般
Research Field 生物資源科学
Research InstitutionMeijo University (2004)
Mie University (2002-2003)

Principal Investigator

OHMIYA Kunio  Meijo University, Professor, 農学部, 教授 (60023488)

Co-Investigator(Kenkyū-buntansha) ICHIHARA Shigeyuki  Meijo University, Professor, 農学部, 教授 (30092993)
SAKKA Kazuo  Meijo University, Professor, 生物資源学部, 教授 (20154031)
KIMURA Tetsuya  Meijo University, Associate Professor, 生物資源学部, 助教授 (00281080)
KAJINO Tsutomu  Toyota Central R&D Labs INC, Senior Researcher, 主任研究員 (10394636)
Project Period (FY) 2002 – 2004
Project Status Completed (Fiscal Year 2004)
Budget Amount *help
¥53,430,000 (Direct Cost: ¥41,100,000、Indirect Cost: ¥12,330,000)
Fiscal Year 2004: ¥13,520,000 (Direct Cost: ¥10,400,000、Indirect Cost: ¥3,120,000)
Fiscal Year 2003: ¥13,520,000 (Direct Cost: ¥10,400,000、Indirect Cost: ¥3,120,000)
Fiscal Year 2002: ¥26,390,000 (Direct Cost: ¥20,300,000、Indirect Cost: ¥6,090,000)
Keywordscellulosome / cohesin / dockerin / nano-porous silica / chlorophyll / immobilizatiom / NADH synthesis / organization of global warming gas / セルラーゼ複合体 / Clostridium thermocellum / 炭酸ガス固定 / 人工酵素複合体 / 表面プラズモン共鳴 / 人口酵素複合体
Research Abstract

The final purpose of this project is the reduction of CO2 to CH3OH via HCOOH and HCHO by using formic acid dehydrogenase, formaldehyde dehydrogenase and alcohol dehydrogenase. These dehydrogenases are planed to arrange on a core protein or scaffolding proteins which is found in the cellulase complexes, cellulosomes. The core protein consists of several repeats of cohesion modules. One cohesion module can bind a dockerin module of an enzyme, cellulosome component. This cohesion-dockerin interaction may allow us the construction of artificial enzyme complex for the effective reduction of CO2 to CH3OH. For the driving force of the sequential enzymic reduction of CO2, solar energy via chlorophyll is employed to reduce NAD to NADH by NADH dehydrogenase.
These plans were established and concreted as follows in this study based on the data obtained from the studies of anaerobic bacterial cellulolytic genes and enzymes for past 20 years.
1) Fibrolytic novel enzyme genes and their enzymes were is … More olated and characterized
from anaerobic cellulolytic bacteria such as Clostridium thermocellum, Clostridium josui, and Ruminococcus albus. The components of cellulase complex, cellulosomes, such as core proteins consisting of cohesin and more than 20 enzymes having dockerin were specified, in addition to their binding properties to form cellulosome from these anaerobes.
2) Three different types of cohesin with different binding properties were specified and the genes encoding 2 and 3 cohesin modules were ligated to one gene to produce chimera cohesin protein. The chimera scaffolding proteins or cellulase integrating proteins (Cip) consists of two and three coheshins were denoted as Cip2 and Cip3, respectively.
Thereafter, it was confirmed by using a BlAcore method that the dockerin module proteins bounded only to their counterpart of cohesin, specifically. This suggested that the chimera enzymes having a dockerin module could be arranged on the chimera Cips.
3) A dockerin module gene was ligated to a formic acid dehydrogenase gene from Mycobacterium vaccae N10 to form a chimera of dockerin formic acid dehydrogenase.
4) The resulted chimera protein purified recombinant E. coli revealed both normal enzyme activity and dissociation constant similar to that of free dockerin to Cip2, indicating that chimerization of dockerin and formic acid dehydrogenase did not affect on both binding properties of cohesion to dockerin and enzyme properties.
5) A NADH dehydrogenase gene was cloned from chromosomal DNA of Anabaena variabilis PCC7120 and expressed in E. coli. The NAD reducing reaction of the enzyme was faster than the NADH oxidizing reaction. This property was acceptable to produce NADH in our further studies.
6) The NADH dehydrogenase solution was mixed with chlorophyll immobilized in the nano porous silica and stirred overnight under the daylight. NADH was synthesized under the presence of electron mediator "methyl viologen".
7) The NADH dehydrogenase-dockerin chimera was constructed to arrange on chimera Cip2, but its arrangement on Cip2 is still going.
From these results obtained in this study, many of the essential elements to construct artificial enzyme complex, except chimeras of form aldehyde dehydorogenase-dockerin and of alcohol dehydrogenase-dockerin were prepared. This will allows us to reduce CO2 to formic acid after optimization of the enzymatic reaction conditions by using solar energy. Less

Report

(4 results)
  • 2004 Annual Research Report   Final Research Report Summary
  • 2003 Annual Research Report
  • 2002 Annual Research Report
  • Research Products

    (17 results)

All 2005 2004 2003 Other

All Journal Article (13 results) Book (1 results) Patent(Industrial Property Rights) (2 results) Publications (1 results)

  • [Journal Article] 嫌気性細菌の機能を駆使したバイオマスの有効利用2005

    • Author(s)
      大宮 邦雄
    • Journal Title

      生物工学会誌 83・1

      Pages: 7-17

    • NAID

      110002950203

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Annual Research Report 2004 Final Research Report Summary
  • [Journal Article] Effective Utilization of Biomass by using Anaerobic Bacteroal Functions.2005

    • Author(s)
      Kunio Ohmiya
    • Journal Title

      J. Bioenginieering and Biotechnology 83(1)

      Pages: 7-17

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Cohesin-Dockerin Interactions within and between Clostridium josui and Clostridium thermocellum2004

    • Author(s)
      S.Jindou, A.Soda, S.Karita, T.Kajino, P.Beguin, J.H.D Wu, et al.
    • Journal Title

      J Biol.Chem. 279・11

      Pages: 9867-9874

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Interaction between a type-II dockerin domain and a type-II cohesin domain from Clostridium thermocellum cellulosome2004

    • Author(s)
      S.Jindou, T.Kajino, M.Inagaki, S.Karita, P.Beguin, T.Kimura, et al.
    • Journal Title

      Biosci.Biotechnol.Biochem.(2004) 68

      Pages: 924-926

    • NAID

      10013144102

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Annual Research Report 2004 Final Research Report Summary
  • [Journal Article] Nanoscale organization of chlorophyll a in mesoporous silica : Efficient energy transfer and stabilized charge separation as in natural photosynthesis2004

    • Author(s)
      Itoh T, Yano K, Kajino T, Itoh S, Shibata Y, Mino H, Miyamoto
    • Journal Title

      Journal of Physical Chemistry B 108

      Pages: 13683-18687

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Annual Research Report 2004 Final Research Report Summary
  • [Journal Article] Cohesin-Dockerin Interactions within and between Clostridium josui and Clostridium thermocellum2004

    • Author(s)
      S.Jindou, A.Soda, S.Karita, T.Kajino, P.Beguin, J.H.D Wu, et al.
    • Journal Title

      J.Biol.Chem. 279(11)

      Pages: 9867-9874

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Interaction between a type-II dockerin domain and a type-II cohesin domain from Clostridium thermocellum cellulosome2004

    • Author(s)
      S.Jindou, T.Kajino, M.Inagaki, S.Karita, P.Beguin, T.Kimura, et al.
    • Journal Title

      Biosci.Biotechnol.Biochem. 68

      Pages: 924-926

    • NAID

      10013144102

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Nanoscale organization of chlorophyll a in mesoporous silica : Efficient energy transfer and stabilized charge separation as in natural photosynthesis2004

    • Author(s)
      Itoh T, Yano K, Kajino T, Itoh S, Shibata Y, Mino H, Miyamoto
    • Journal Title

      J.Physical Chemistry 108

      Pages: 13683-13687

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Cohesin-Dockerin Interactions within and between Clostridium josui and Clostridium thermocellum2004

    • Author(s)
      S.Jindou, A.Soda, S.Karita, T.Kajino.P.Beguin.J.H.D Wu, et al.
    • Journal Title

      J.Biol.Chem. 279・11

      Pages: 9867-9874

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Characterization of a cellulase containing a family 30 carbohydrate-binding module (CBM) derived from Clostridium thermocellum CelJ2003

    • Author(s)
      T.Arai, R.Araki, A.Tanaka, S.Karita, T.Kimura, K.Sakka, K.Ohmi
    • Journal Title

      J.Bacteriol 185・2

      Pages: 504-512

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Annual Research Report 2004 Final Research Report Summary
  • [Journal Article] The multi-layered structure of Dps with a novel di-nuclear ferroxidase center2003

    • Author(s)
      Ren B, Tibbelin G, Kajino T, Asami O, Ladenstein R
    • Journal Title

      Journal of Molecular Biology 329

      Pages: 467-477

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Annual Research Report 2004 Final Research Report Summary
  • [Journal Article] Characterization of a cellulase containing a family 30 carbohydrate-binding module (CBM) derived from Clostridium thermocellum CelJ2003

    • Author(s)
      T.Arai, R.Araki, A.Tanaka, S.Karita, T.Kimura, K.Sakka, K.Ohmiya
    • Journal Title

      J.Bacteriol. 185(2)

      Pages: 504-512

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] The multi-layered structure of Dps with a novel di-nuclear ferroxidase center2003

    • Author(s)
      Ren B, Tibbelin Kajino T, Asami O, Ladenstein R
    • Journal Title

      J.Molecular Biology 329

      Pages: 467-467

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Book] 応用微生物学2004

    • Author(s)
      塚越 規弘(市原茂幸 分担執筆)
    • Publisher
      朝倉書店
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Annual Research Report 2004 Final Research Report Summary
  • [Patent(Industrial Property Rights)] 酵素配列複合体及び固体化酵素配列複合体とそれらの製造2003

    • Inventor(s)
      福嶋 喜章, 梶野 勉, 大宮
    • Industrial Property Rights Holder
      豊田中研
    • Patent Publication Number
      2004-236504
    • Filing Date
      2003-02-03
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Patent(Industrial Property Rights)] 酵素配列複合体及び固体化酵素配列複合体とそれらの製造方法、担体分子及び酵素2003

    • Inventor(s)
      福嶋喜章, 梶野勉, 大宮邦雄
    • Industrial Property Rights Holder
      豊田中研
    • Patent Publication Number
      2004-236504
    • Filing Date
      2003-02-03
    • Related Report
      2004 Annual Research Report
  • [Publications] Jindou S, Souda A, Karita S, Kajino T, Beguin P, Wu D, Inagaki M, Kimura T, Sakka K, Ohmiya K.: "Cohesin/dockerin interactions within and between Clostridium josui and Clostridium thermocellum : Binding selectivity between cognate dockerin and cohesin domains and species specificity."J Biol Chem.. (In press). (2004)

    • Related Report
      2003 Annual Research Report

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Published: 2002-04-01   Modified: 2016-04-21  

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