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Genome/Proteome-lead Drug Discovery Based on Peptide/Protein Chemistry

Research Project

Project/Area Number 14207099
Research Category

Grant-in-Aid for Scientific Research (A)

Allocation TypeSingle-year Grants
Section一般
Research Field 医薬分子機能学
Research InstitutionKyoto University

Principal Investigator

FUJII Nobutaka  Kyoto University, Grad School of Pharm.Sci., Professor, 薬学研究科, 教授 (60109014)

Co-Investigator(Kenkyū-buntansha) OTAKA Akira  Kyoto University, Grad School of Pharm.Sci., Associate Professor, 薬学研究科, 助教授 (20201973)
TAMAMURA Hirokazu  Kyoto University, Grad School of Pharm.Sci., Associate Professor, 薬学研究科, 助教授 (80217182)
Project Period (FY) 2002 – 2004
Project Status Completed (Fiscal Year 2004)
Budget Amount *help
¥50,440,000 (Direct Cost: ¥38,800,000、Indirect Cost: ¥11,640,000)
Fiscal Year 2004: ¥7,410,000 (Direct Cost: ¥5,700,000、Indirect Cost: ¥1,710,000)
Fiscal Year 2003: ¥7,800,000 (Direct Cost: ¥6,000,000、Indirect Cost: ¥1,800,000)
Fiscal Year 2002: ¥35,230,000 (Direct Cost: ¥27,100,000、Indirect Cost: ¥8,130,000)
Keywordsgenome science / drug discovery / peptide-isosteres / Peptide Chemistry / CXCR4 antagonist / chemical ligation / G-protein coupled receptor / Constitutively Active Receptor Technology / ゲノム情報 / 蛋白質化学 / 環状ペプチド / 創薬テンプレート / 7回膜貫通型レセプター / HIV感染 / Germinal Center / リウマチ / ゲノム / プロテオーム / SARS Corona Virus / CXCR4 / 癌 / 7TM-GPCR / αVβ3-integrin / 立体配座固定 / ユニバーサル創薬テンプレート / エイズ
Research Abstract

Recent advance in genome science is supposed to provide exponentially amplified drug targets. As such, there has been increasing upsurge in the development of innovative platform to facilitate the genome/proteome-based drug discovery process, whereas there exists no reliable general strategy.
We have engaged to apply organo-metallic chemistry to the synthesis of peptide-isosteres. In this research project, our "Peptide to Non-peptide Chemistry" was combined with the several precedents using cyclic peptides as bridging scaffolds between bioactive peptides/proteins and pharmaceutical drugs. Of note, we focused our efforts to develop peptide-lead conformationally restricted templates for genome/proteome-lead drug discovery. The method involves the following advantageous features :
1)Effective Use of Natural & Unnatural Amino Acids as Chiral Building Blocks
2)Efficient Construction of Highly Reliable Biased Library Based on Mature Peptide Chemistry
3)Easy Identification of Active Conformation using NMR, etc.
4)Easy Access to Drug-like(Lipinski) Structure by Alkene Isosteres Usage
As one embodiment, we examined this strategy focusing on its application to downsizing and non-peptidylation of a 14-peptide CXCR4 antagonist, the receptor of which is relevant to several problematic diseases (cancer metastasis, AIDS, rheumatoid arthritis, etc.), in combination with CART (Constitutively Active Receptor Technology). A new method for the facile synthesis of membrane embedded peptides utilizing lipid bilayer-assisted chemical ligation was also developed aiming at the chemical synthesis of CXCR4, which is classified to 7-transmembrane G-protein coupled receptor family. Taken together, these new methods will provide a new avenue to establish an innovative "Genome/Proteome-lead Drug Discovery" platform.

Report

(4 results)
  • 2004 Annual Research Report   Final Research Report Summary
  • 2003 Annual Research Report
  • 2002 Annual Research Report
  • Research Products

    (34 results)

All 2005 2004 2003 2002 Other

All Journal Article (20 results) Book (1 results) Publications (13 results)

  • [Journal Article] Bioluminescence resonance energy transfer reveals ligand-induced conformational changes in CXCR4 homo- and heterodimers.2005

    • Author(s)
      Y.Percherancier, et al.
    • Journal Title

      J.Biol.Chem. 280

      Pages: 9895-9903

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Bioluminescence resonance energy transfer reveals ligand-induced conformational changes in CXCR4 homo-and heterodimers.2005

    • Author(s)
      Y.Percherancier, et al.
    • Journal Title

      J.Biol.Chem. 280(11)

      Pages: 9895-9903

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Facile Synthesis of Membrane-embedded Peptides Utilizing Lipid Bilayer-assisted Chemical Ligation.2004

    • Author(s)
      A.Otaka, et al.
    • Journal Title

      Chem.Commun. 7

      Pages: 1722-1723

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Facile Synthesis of Membrane-embedded Peptides Utilizing Lipid Bilayer-assisted Chemical Ligation.2004

    • Author(s)
      A.Otaka, et al.
    • Journal Title

      Chem.Commun. 7(15)

      Pages: 1722-1723

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Facile Synthesis of Membrane-embedded Peptides Utilizing Lipid Bilayer-assisted Chemical Ligation.2004

    • Author(s)
      A.Otaka, S.Ueda, N.Fujii, et al.
    • Journal Title

      Chem.Commun. 7

      Pages: 1722-1723

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Topochemical Exploration of Potent Compounds Using Retro-Enantiomer Libraries of Cyclic Pentapeptides.2004

    • Author(s)
      H.Tamamura, N.Fujii, et al.
    • Journal Title

      Org.Biomol.Chem. 2

      Pages: 1255-1257

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Synthesis of Fluorine-Containing Bioisosteres Corresponding to Phosphoamino Acids and Dipeptide Units2004

    • Author(s)
      A.Otaka, E.Mitsuyama, N.Fujii, et al.
    • Journal Title

      Biopolymers 76

      Pages: 140-149

    • Related Report
      2004 Annual Research Report
  • [Journal Article] SmI2-mediated Reduction of γ,γ-Difluoro-_α,β-enoates and Its Application to the Synthesis of (Z)-Fluoroalkene-type Dipeptide Isosteres2004

    • Author(s)
      A.Otaka, J.Watanabe, N.Fujii, et al.
    • Journal Title

      J.Org.Chem. 69

      Pages: 1634-1645

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Identification of a CXCR4 Antagonist, a T140 Analog, as an Anti-rheumatoid Arthritis Agent.2004

    • Author(s)
      H.Tamamura, N.Fujii, et al.
    • Journal Title

      FEBS Lett. 569・1

      Pages: 99-104

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Germinal Center Dark and Light Zone Organization Is Mediated by CXCR4 and CXCR5.2004

    • Author(s)
      C.D.C.Allen, H.Tamamura, N.Fujii, J.G.Cyster, et al.
    • Journal Title

      Nature Immunol. 5

      Pages: 943-952

    • Related Report
      2004 Annual Research Report
  • [Journal Article] The Therapeutic Potential of CXCR4 Antagonists in the Treatment of HIV.2003

    • Author(s)
      N.Fujii, et al.
    • Journal Title

      Expert Opinion on Investigational Drugs 12

      Pages: 185-195

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Reduction of Peptide Character of HIV Protease Inhibitors that Exhibit Nanomolar Potency against Multi-drug Resistant HIV-1 Strains.2003

    • Author(s)
      H.Tamamura, et al.
    • Journal Title

      J.Med.Chem. 46

      Pages: 1764-1768

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Molecular Size Reduction of a Potent CXCR4-Chemokimne Antagonists Using Orthogona Combination of Conformation-based and Sequence-based Libraries.2003

    • Author(s)
      N.Fujii, et al.
    • Journal Title

      Angew.Chem.Int Ed.Engl. 42

      Pages: 3251-3253

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Lipid Bilayer Simulations of CXCR4 with Inverse Agonists and Weak Partial Agonists2003

    • Author(s)
      J.O.Trent, et al.
    • Journal Title

      J.Biol.Chem. 278

      Pages: 47136-47144

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] The Therapeutic Potential of CXCR4 Antagonists in the Treatment of HIV.2003

    • Author(s)
      N.Fujii, et al.
    • Journal Title

      Expert Opinion on Investigational Drugs 12(2)

      Pages: 185-195

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Reduction of Peptide Character of HIV Protease Inhibitors that Exhibit Nanomolar Potency against Multi-drug Resistant HIV-1 Strains.2003

    • Author(s)
      H.Tamamura, et al.
    • Journal Title

      J.Med.Chem. 46(9)

      Pages: 1764-1768

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Molecular Size Reduction of a Potent CXCR4-Chemokimne Antagonists Using Orthogona Combination of Conformation-based and Sequence-based Libraries.2003

    • Author(s)
      N.Fujii, et al.
    • Journal Title

      Angew.Chem.Int Ed.Engl. 42(28)

      Pages: 3251-3253

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Lipid Bilayer Simulations of CXCR4 with Inverse Agonists and Weak Partial Agonists.2003

    • Author(s)
      J.O.Trent, et al.
    • Journal Title

      J.Biol.Chem. 278(47)

      Pages: 47136-47144

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Diastereoselective Synthesis of New ψ[(E)-CH=CH]- and ψ[(Z)-CH=CH]-type Alkene Dipeptide Isosteres by Organocopper Reagents and Application to Conformationally Restricted Cyclic RGD Peptidomimetics.2002

    • Author(s)
      S.Oishi, et al.
    • Journal Title

      J.Org.Chem. 67

      Pages: 6162-6173

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Diastereoselective Synthesis of New ψ[(E)-CH=CH]-and ψ[(Z)-CH=CH]-type Alkene Dipeptide Isosteres by Organocopper Reagents and Application to Conformationally Restricted Cyclic RGD Peptidomimetics.2002

    • Author(s)
      S.Oishi, et al.
    • Journal Title

      J.Org.Chem. 67(17)

      Pages: 6162-6173

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Book] Chemokine Roles in Immunoregulation and Disease(ed by P.M.Murphy & R.Horuk)2004

    • Author(s)
      H.Zhang, N.Fujii, S.C.Peiper, et al.
    • Publisher
      Springer
    • Related Report
      2004 Annual Research Report
  • [Publications] N.Fujii, et al.: "Molecular Size Reduction of a Potent CXCR4-Chemokimne Antagonists Using Orthogonal Combination of Conformation-based and Sequence-based Libraries."Angew.Chem.Int Ed.Engl.. 42. 3251-3253 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] N.Fujii, et al.: "The Therapeutic Potential of CXCR4 Antagonists in the Treatment of HIV."Expert Opinion on Investigational Drugs. 12. 186-195 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] H.Tamamura, et al.: "Reduction of Peptide Character of HIV Protease Inhibitors that Exhibit Nanomolar Potency"J.Med.Chem.. 46. 1764-1768 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] H.Tamamura, et al.: "T140 Analogs as CXCR4 Antagonists Identified as Anti-metastatic Agents in the Treatment of Breast Cancer"FEBS Lett.. 550. 79-83 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] A/Otaka, et al.: "Application of Samarium Diiodide (SmI2)-induced Reduction of g-Acetoxy-a, b-enoates with a-Specific Kinetic Electrophilic Trapping for the Synthesis of Amino Acid Derivatives"Chem.Commun.. 2003. 1834-1835 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] "Synthesis of Potent b-Secretase Inhibitors Containing a Hydroxyethylamine Depeptide Isostere and Their Structure-Activity Relationship Studies."Org.Biomol.Chem.. 1. 2468-2473 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] W.B.Zhang, et al.: "Ernst Schering Research Foundation Workshop 45:Chemokine Roles in Immunoregul ation and Disease, ed by P.M.Murphy & R.Horuk, Springer"Functional Expression of CXCR4 in S.cerevisiae : Development of Tools for Mechanistic and Pharmacologic Studies.. 125-152 (2004)

    • Related Report
      2003 Annual Research Report
  • [Publications] S.Oishi, et al.: "Diastereoselective Synthesis of Ψ[(E)-CH=CMe]-and Ψ[(Z)-CH=CMe]-TypeDipeptide isosteres by Organocopper-Mediated anti-SN2' Reaction"Org.Lett.. Vol.4. 1051-1054 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] S.Oishi, et al.: "Diastereoselective SynthesIs of Ψ[(E)-CMe=CH]-and Ψ[(E)-CMe=CMe]-Type Dipeptide Isosteres Based on Organocopper-Mediated anti-SN2'"Org.Lett.. Vol.4. 1055-1058 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] H.Ohno, et al.: "Synthesis of allenes from allylic alcohol derivatives bearing a bromine atom using a palladium(O)/diethylzinc system"J.Org.Chem.. Vol67. 1359-1367 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] H.Tamamura, et al.: "Efficient stereoselective synthesis of peptidomimetics containing hydroxyethylamine dipeptide isosteres utilizing the aza-Payne rearrangement and O, N-acyl transfer reactions"J.Chem.Soc., Perkin Trans I. 2002. 577-580 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] S.Oishi, et al.: "Regio-and stereoselective ring-opening of chiral 1,3-oxazolidin-2-one derivatives by organocopper reagents provides novel access to di-, tri-and tetra-substituted alkene dipeptide isosteres"J.Chem.Soc., Perkin Trans I. 2002. 1786-1793 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] A.Otaka, et al.: "Regio-and Stereoselective Synthesis of (E)-Alkene trans-Xaa-Pro Dipeptide mimetics Utilizing Organocopper-Mediated anti-SN2' reactions"J.Org.Chem.. Vol.67. 6152-6161 (2002)

    • Related Report
      2002 Annual Research Report

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Published: 2002-04-01   Modified: 2016-04-21  

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