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Enzymatic analyses of eukaryotic chromosomal DNA replication using the Epstein Barr Virus-derived oriP replicon

Research Project

Project/Area Number 14208079
Research Category

Grant-in-Aid for Scientific Research (A)

Allocation TypeSingle-year Grants
Section一般
Research Field Functional biochemistry
Research InstitutionTokyo Metropolitan Organization for Medical Research

Principal Investigator

MASAI Hisao  Tokyo Metropolitan Institute of Medical Science, Genome Dynamics Project, Project Leader, 東京都臨床医学総合研究所, 副参事研究員 (40229349)

Co-Investigator(Kenkyū-buntansha) SUGATA Naoko  Tokyo Metropolitan Institute of Medical Science, Genome Dynamics Project, Senior Researcher, 東京都臨床医学総合研究所, 主任研究員 (30344071)
YOU Zhiying  Tokyo Metropolitan Institute of Medical Science, Genome Dynamics Project, Senior Researcher, 東京都臨床医学総合研究所, 主任研究員 (90332270)
MORIYAMA Kenji  Tokyo Metropolitan Institute of Medical Science, Genome Dynamics Project, Researcher, 東京都臨床医学総合研究所, 研究員 (00250217)
TSURIMOTO Toshiki  Kyushu University, Faculty of Science, Professor, 理学部・生物学科, 教授 (30163885)
SIRAKATA Masaki  Tokyo Medical and Dental University, Assistant Professor, 難治疾患研究所, 助手 (70251551)
TAMAI Katsuyuki  Cyclex Co. Ltd., Chief Executive Queer, 代表取締役
Project Period (FY) 2002 – 2004
Project Status Completed (Fiscal Year 2004)
Budget Amount *help
¥54,080,000 (Direct Cost: ¥41,600,000、Indirect Cost: ¥12,480,000)
Fiscal Year 2004: ¥12,870,000 (Direct Cost: ¥9,900,000、Indirect Cost: ¥2,970,000)
Fiscal Year 2003: ¥11,830,000 (Direct Cost: ¥9,100,000、Indirect Cost: ¥2,730,000)
Fiscal Year 2002: ¥29,380,000 (Direct Cost: ¥22,600,000、Indirect Cost: ¥6,780,000)
KeywordsEpstein Barr Virus / in vitro DNA replication / MCM complex / ORC complex / preRC / oriP / EBNA1 protein / cell cycle / Epstein Brrr Virus / in viitro DNA複製 / in vitro DNA複製
Research Abstract

Replication of Epstein Barr Viruses (EBV) occurs only once during S phase in coordination with the host cell cycle. The predominant replication origin of EBV, oriP, can support autonomous replication of a plasmid in the presence of virus-encoded EBNA-1 protein. oriP-dependent replication is cell cycle-regulated and depends on the host factors including ORC and most likely MCM, and supports a long-term maintenance of the plasmid in cells. Thus, EBV may serve as an excellent model replicon to probe the roles of cellular replication factors and to dissect the molecular mechanisms of the assembly and activation of eukaryotic replication complexes.
We first examined replication of the oriP plasmid on a cellular level. It required the passage through M phase and appears to occur during late S phase. The size of the episomal plasmid in a complex with chromatin proteins changes during cell cycle. We have also shown that Cdc7 function is required for oriP replication. We next attempted to assemb … More le the preRC (prereplicative complex) at the oriP. We speculated that proper chromatin structures would be required for assembly of a functional preRC and established a method for rapid isolation of the chromatin template form mammalian cells. The developed method has two features. 1) The oriP plasmid was linked to SV40 origin and the composite replicon plasmid was introduced into cells expressing the large T-antigen, which permitted highly efficient transient plasmid replication from the SV40 origin. This led to amplification of the plasmid copy number and allowed recovery of a sufficient amount of the template DNA for further analyses. 2) A multiple copies of the tetO sequence (the target of tetR protein) were added to the plasmid to facilitate the recovery of the template chromatin through tetR affinity beads. These modifications enabled us to rapidly isolate a sufficient quantity of the oriP plasmid chromatin.
We are now in the process of characterizing the isolated chromatin template to determine the replication proteins present in the complex. We also plan to reconstitute the preRC on the chromatin template using EBNA1 protein and the purified preRC components. We have already overexpressed and purified EBNA1, Cdt1 and MCM proteins, and are now purifying The Cdc6 and ORC complexes. We believe that the system we have established will be very useful for enzymatic characterization of the assembly and activation of the replication complexes at eukaryotic chromosomal replication origins. Less

Report

(4 results)
  • 2004 Annual Research Report   Final Research Report Summary
  • 2003 Annual Research Report
  • 2002 Annual Research Report
  • Research Products

    (28 results)

All 2005 2004 Other

All Journal Article (14 results) Publications (14 results)

  • [Journal Article] Cell cycle and developmental regulations of replication factors in mouse embryonic stem cells.2005

    • Author(s)
      Fujii-Yamamoto, H, Kim, J-M., Arai, K, Masai,H.
    • Journal Title

      J. Biol. Chem. 280

      Pages: 12976-12987

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] A second human Dbf4/ASK-related protein, Drf1/ASKL1 is required for efficient completion of S and M phases.2005

    • Author(s)
      Yoshizawa, N., Ishii, A., Taniyama, C., Matsui, E., Arai, K., Masai,H.
    • Journal Title

      J. Biol. Chem. 280

      Pages: 13062-13070

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Functional analyses of mouse ASK, an activator subunit for C dc7 kinase, using conditional ASK knockout ES cells.2005

    • Author(s)
      Yamashita, N., Kim, J-M, Koiwai, 0, Arai, K., Masai, H.
    • Journal Title

      Genes to Cells (In press)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Cell cycle and developmental regulations of replication factors in mouse embryonic stem cells.2005

    • Author(s)
      Fujii-Yamamoto, H., Kim, J-M., Arai, K., Masai, H.
    • Journal Title

      J.Biol.Chem. 280

      Pages: 12976-12987

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Annual Research Report 2004 Final Research Report Summary
  • [Journal Article] A second human Dbf4/ASK-related protein, Drf1/ASKL1 is required for efficient completion of S and M phases.2005

    • Author(s)
      Yoshizawa, N., Ishii, A., Taniyama, C., Matsui, E., Arai, K., Masai, H.
    • Journal Title

      J.Biol.Chem. 280

      Pages: 11362-113070

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Functional analyses of mouse ASK, an activator subunit for Cdc7 kinase, using conditional ASK knockout ES cells.2005

    • Author(s)
      Yamashita, N., Kim, J-M., Koiwai, O., Arai, K., Masai, H.
    • Journal Title

      Genes to Cells (In press)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] A second human Dbf4/ASK-related protein, Crf1/ASKL1 is required for efficient completion of S and M phases.2005

    • Author(s)
      Yoshizawa, N., Ishii, A., Taniyama, C., Matsui, E., Arai, K., Masai, H.
    • Journal Title

      J.Biol.Chem. 280

      Pages: 13062-13070

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Functional analyses of mouse ASK, an activator subunit for Cdc7 kinase, using conditional ASK knockout ES cells.2005

    • Author(s)
      Yamashita, H., Kim, J-M., Koiwai, O., Arai, K., Masai, H.
    • Journal Title

      Genes to Cells (In press)

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Genetic dissection of mammalian Cdc7 kinase : Cell cycle and developmental roles.2004

    • Author(s)
      Kim, J-M, Masai, H.
    • Journal Title

      Cell Cycle 3

      Pages: 300-304

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Functional interaction between tumor suppressor menin and activator of S-phase kinase.2004

    • Author(s)
      Schnepp, R.W., Hou, Z., Wang, H., Petersen, C., Silva, A, Masai, H, Hua, X.
    • Journal Title

      Cancer Res. 64

      Pages: 6791-6796

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Overexpression of CR/periphilin downregulates Cdc7 expression and induces S-phase arrest.2004

    • Author(s)
      Kurita, M., Suzuki, H., Masai, H., Mizumoto, K., 0gala, E., Nishimoto, I., Aiso, S., Matsuoka,M.
    • Journal Title

      Biochem. Biophys. Res. Commun. 32

      Pages: 554-561

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Genetic dissection of mammalian Cdc7 kinase : Cell cycle and developmental roles.2004

    • Author(s)
      Kim, J-M., Masai, H.
    • Journal Title

      Cell Cycle 3

      Pages: 300-304

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Annual Research Report 2004 Final Research Report Summary
  • [Journal Article] Functional interaction between tumor suppressor menin and activator of S-phase kinase.2004

    • Author(s)
      Schnepp, R.W., Hou, Z., Wang, H., Petersen, C., Silva, A., Masai, H., Hua, X.
    • Journal Title

      Cancer Res. 64

      Pages: 6791-6796

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Annual Research Report 2004 Final Research Report Summary
  • [Journal Article] Overexpression of CR/periphilin downregulates Cdc7 expression and induces S-phase arrest.2004

    • Author(s)
      Kurita, M., Suzuki, H., Masai, H., Mizumoto, K., Ogata, E., Nishimoto, I., Aiso, S., Matsuoka, M.
    • Journal Title

      Biochem.Biophys.Res.Commun. 32

      Pages: 554-561

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Annual Research Report 2004 Final Research Report Summary
  • [Publications] Tanaka, T., Taniyama, C., Arai, K., Masai, H.: "ATPase/helicase motif mutants of Escherichia coli PriA protein essential for recombination-dependent DNA replication"Genes to Cells. 8. 251-261 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Sato, N., Sato, M., Nakayama, M., Saitoh, R., Arai, K., Masai, H.: "Cell cycle regulation of chromatin binding and nuclear localization of Cdc7-ASK kinase complex"Genes to Cells. 8. 451-463 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Kim, J.M., Takemoto, N., Arai K., Masai, H.: "Hypomorphic mutation in an essential cell-cycle kinase causes growth retardation and impaired spermatogenesis"EMBO Journal. 22. 5260-5272 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Mizukoshi, T., Tanaka, T., Arai, K., Kohda, D., Masai, H.: "A critical role of the 3'-terminus of nascent DNA chains in recognition of stalled replication forks."Journal of Biological.Chemistry. 278. 42234-42239 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] You, Z., Ishimi, Y., Mizuno, T., Sugasawa, K., Hanaoka, F., Masai, H.: "Thymine-rich single-stranded DNA sequences specifically activate mouse Mcm4/6/7 helicase on Y-fork and bubble-like substrates."EMBO Journal. 22. 6148-6160 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Furukohri, A., Sato, N., Masai, H., Arai, K., Sugino, A., Waga, S.: "Identification and characterization of a Xenopus homolog of dbf4, a regulatory subunit of the cdc7 protein kinase required for the initiation of DNA."Journal of Biological Chemistry (Tokyo).. 134. 447-457 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] 正井久雄: "DNAとそれを認識する蛋白質の多様性と普遍性 蛋白質 核酸 酵素 特集 DNA二重らせん構造の半世紀(1)"共立出版. 589-591 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Kim, J.M., Nakao, K., Nakamura, K., Saito, I., Katsuki, M., Arai, K., MASAI, H.: "Inactivation of Cdc7 kinase in mouse embryonic stem cells results in S phase arrest and p53-dependent cell death"EMBO Journal. 21. 2168-2179 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Yamada, M., Sato, N., Taniyama, C., Ohtani, K., Arai, K., Masai, H: "A 63 base-pair DNA segment containing a Sp1 site but not a canonical E2F site can confer growth-dependent and E2F-mediated transcriptional stimulation of the human ASK gene encoding the regulatory subunit for human Cdc7-related kinase"Journal of Biological Chemistry. 277. 27668-27681 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Tanaka, T., Mizukoshi, T., Taniyama, C., Kohda, D., Arai, K., Masai, H.: "DNA binding of PriA protein requires cooperation of the N-terminal D-loop/arrested-fork binding and C-terminal helicase domains"Journal of Biological Chemistry. 277. 38062-38071 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Masai, H., Arai, K.: "Cdc7 kinase complex : A key regulator for initiation of DNA replication"Journal of Cellular Physiology. 190. 287-296 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Tanaka, T., Taniyama, C., Arai, K., Masai, H.: "ATPase/helicase motif mutants of Escherichia coli PriA protein essential for recombination-dependent DNA replication"Genes to Cells. 8. 251-261 (2003)

    • Related Report
      2002 Annual Research Report
  • [Publications] You, Z., Ishimi, Y., Masai, H., Hanaoka, F: "Roles of Mcm7 and Mcm4 subunits in DNA helicase activity of mouse Mcm4/6/7 complex"Journal of Biological Chemistry. 277. 42471-42479 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] 松影昭夫, 正井久雄 編: "ゲノムの複製と分配"シュプリンガー・フェアラーク東京. 234 (2002)

    • Related Report
      2002 Annual Research Report

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Published: 2002-04-01   Modified: 2016-04-21  

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