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Diversity of enzymatic specificities and genome structures of vertebrate pepsinogens.

Research Project

Project/Area Number 14340263
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field 動物生理・代謝
Research InstitutionKYOTO UNIVERSITY

Principal Investigator

KAGEYAMA Takashi  Kyoto University, Primate Research Institute, Professor, 霊長類研究所, 教授 (20027501)

Co-Investigator(Kenkyū-buntansha) YONEZAWA Satoshi  Aichi Human Service Center, Senior Researcher, 究所, 室長 (90001867)
SUZUKI Juri  Kyoto University, Primate Research Institute, Associate Professor, 霊長類研究所, 助教授 (10175408)
Project Period (FY) 2002 – 2004
Project Status Completed (Fiscal Year 2004)
Budget Amount *help
¥14,900,000 (Direct Cost: ¥14,900,000)
Fiscal Year 2004: ¥3,600,000 (Direct Cost: ¥3,600,000)
Fiscal Year 2003: ¥3,600,000 (Direct Cost: ¥3,600,000)
Fiscal Year 2002: ¥7,700,000 (Direct Cost: ¥7,700,000)
Keywordspepsinogen / pepsin / enzyme specificity / active site / peptide substrate / S'1 / 基質特異性 / P'1 / 霊長類 / 新世界ザル / 食性
Research Abstract

Proteolytic specificities of human pepsin A and monkey chymosin were investigated with a variety of oligopeptides as substrates. Human pepsin A had a strict preference for hydrophobic/aromatic residues at P'1 whilst monkey chymosin showed a diversified preferences accommodating charged residues as well as hydrophobic/aromatic ones. Comparison of residues forming the S'1 subsite between mammalian pepsins A and chymosins demonstrated the presence of conservative residues including Tyr^<189>, Ile^<213>, and Ile^<300>, and group-specific residues in the 289-298 loop region near the C-terminus. The group-specific residues consisted of hydrophobic residues in pepsin A (Met^<289>, Leu/Ile/Val^<291>, and Leu^<298>), and charged or polar residues in chymosins (Asp/Glu^<289> and Gln/His/Lys^<298>). Since the residues in the loop appeared to be involved in the unique specificities of respective types of enzymes, site-directed mutagenesis was undertaken to replace pepsin-A-specific residues by chymosin-specific ones and vice versa. A yeast expression vector for GST fusion protein was newly developed for expression of mutant proteins. The specificities of pepsin-A mutants could be successfully altered to chymosin-like preference and those of chymosin mutants to pepsin-like specificities, confirming residues in the S'1 loop to be essential for unique proteolytic properties of the enzymes. Increase in preference for charged residues at P'1 in pepsin-A mutants might have been due to increase in the hydrogen-bonding interactions. In chymosin mutants, the reverse is possible. The changes in the catalytic efficiency for peptides having charged residues at P'1 were dominated by kcat rather than Km values.

Report

(4 results)
  • 2004 Annual Research Report   Final Research Report Summary
  • 2003 Annual Research Report
  • 2002 Annual Research Report
  • Research Products

    (18 results)

All 2004 2003 2002 Other

All Journal Article (12 results) Publications (6 results)

  • [Journal Article] Role of S'1 loop residues in the substrate specificities of pepsin A and chymosin2004

    • Author(s)
      T.Kageyama
    • Journal Title

      Biochemistry 43

      Pages: 15122-15130

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Role of S'1 loop residues in the substrate specificities of pepsin A and chymosin.2004

    • Author(s)
      kageyama, T.
    • Journal Title

      Biochemistry 43

      Pages: 15122-15130

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Role of S'1 loop residues in the substrate specificities of pepsin A and chymosin2004

    • Author(s)
      Kageyama, T.
    • Journal Title

      Biochemistry 43

      Pages: 15122-15130

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Tissue distribution, molecular cloning, and gene expression of cytosolic glutathione peroxidase in Japanese monkey2003

    • Author(s)
      R.Fukuhara
    • Journal Title

      Zoological Science 20

      Pages: 861-868

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] 類人猿におけるペプシノゲン遺伝子の多様性2003

    • Author(s)
      成田裕一
    • Journal Title

      霊長類研究 19

      Pages: 125-133

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Tissue distribution, molecular cloning, and gene expression of cytosolic glutathione peroxidase in Japanese monkey.2003

    • Author(s)
      Fukuhara, R.
    • Journal Title

      Zoological Science 20

      Pages: 861-868

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Diversity of structure and function of pepsinogens and pepsins.2003

    • Author(s)
      Kageyama, T.
    • Journal Title

      Recent Research Developments in Biophysics and Biochemistry 3

      Pages: 159-178

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Diversity of ape pepsinogen genes.2003

    • Author(s)
      Narita, Y.
    • Journal Title

      Primate Research 19

      Pages: 125-133

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Structure, molecular evolution, and gene expression of primate superoxide dismutase2002

    • Author(s)
      R.Fukuhara
    • Journal Title

      Gene 296

      Pages: 99-109

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Primary structure, unique enzymatic properties, and molecular evolution of pepsinogen B and pepsin B2002

    • Author(s)
      Y.Narita
    • Journal Title

      Archives of Biochemistry and Biophysics 404

      Pages: 177-185

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Structure, molecular evolution, and gene expression of primate superoxide dismutases.2002

    • Author(s)
      Fukuhara, R.
    • Journal Title

      Gene 296

      Pages: 99-109

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Orimary structure, unique enzymatic properties, and molecular evolution of pepsinogen B and pepsin B.2002

    • Author(s)
      Narita, Y.
    • Journal Title

      Archives of iochemistry and Biophysics 404

      Pages: 177-185

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Publications] Fukuhara, R.: "Tissue distribution, molecular cloning, and gene expression of cytosolic glutathione peroxidase in Japanese monkey"Zoological Science. 20. 861-868 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Kageyama, T.: "Diversity of structure and function of pepsinogens and pepsins"Recent Research Developments in Biophysics and Biochemistry. 3. 159-178 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Narita, Y: "Primary structure, unique enzymatic properties, and molecular evolution of pepsinogen B and pepsin B"Archives of Biochemistry and Biophysics. 404. 177-185 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Kageyama, T.: "Yersinia pseudotuberculosis infection in breeding monkeys : detection and analysis of strain diversity by PCR"Journal of Medical Primatology. 31. 129-135 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Fukuhara, R.: "Structure, molecular evolution, and gene expression of primate superoxide dismutase"Gene. 296. 99-109 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Kageyama, T.: "Diversity of structure and function of pepsinogens and pepsins"Recent Research Developments in Biophysics and Biochemistry. (In press).

    • Related Report
      2002 Annual Research Report

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Published: 2002-04-01   Modified: 2016-04-21  

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