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Cooperativity in Actin Filament and Its Functional Implication : Structural analyses by Quick-Freeze Deep-Etch Replica Electron Microscopy

Research Project

Project/Area Number 14380312
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Biophysics
Research InstitutionThe University of Tokyo

Principal Investigator

KATAYAMA Eisaku  The University of Tokyo, Institute of Medical Science, Professor, 医科学研究所, 教授 (50111505)

Co-Investigator(Kenkyū-buntansha) UYEDA Taro  National Institute for Advanced Industrial Science and Technology, Deputy-Director, ジーンディスカバリー研究センタ, 副センター長(研究職)
Project Period (FY) 2002 – 2003
Project Status Completed (Fiscal Year 2003)
Budget Amount *help
¥16,900,000 (Direct Cost: ¥16,900,000)
Fiscal Year 2003: ¥7,700,000 (Direct Cost: ¥7,700,000)
Fiscal Year 2002: ¥9,200,000 (Direct Cost: ¥9,200,000)
KeywordsQuick-Freeze Electron Microscopy / 3-D Reconstruction / Image Simulation / Actomyosin Sliding Movement / Conformational Change / Reaction Intermediate / Tilting Lever-Arm Hypothesis / Actin Filament / 3次元像再構成法 / コンピュータ・シミュレーション / アクトミオシン / in vitro滑り運動アッセイ / 急速凍結
Research Abstract

This study aimed to capture the instantaneous structure of sliding actomyosin by quick-freeze deep-etch electron microscopy and to analyze the three-dimensional structural changes not only of crossbridges but also of actin filaments which had been postulated to work as simple track of myosin-motor movement. After completion of innovative methodology for 3-D reconstruction of replica specimens, we started the application of similar process to the reconstruction of bulky solid structure like negatively stained specimens. We also devised another methodology to predict the expected deep-etch replica image of the protein molecule, utilizing its atomic coordinates. The structure of myosin heads in rigor-complex matched pretty well to the model proposed by docking the crystal structure of actin and myosin S1. However, most of the crossbridges under sliding condition, unlike prediction, exhibited the configuration kinked to the opposite direction from that of ATP-bound ones. Since the observed … More structure appeared very similar to that of pPDM-crosslinked myosin/ADP complex, we compared quantitatively the surface profile of replica images with that of simulated model-images, utilizing new pattern-matching procedure. The result clearly confirmed that myosin head is oppositely kinked during sliding. This conflicts conventional "Tilting lever-arm hypothesis" and we must consider the new mechanism incorporating the existence of the novel structure.
Actin filaments easily cut into small pieces during in vitro sliding. We compared the actual replica images of such particles with the images simulated from Holmes model of actin, and found that the phase of actin filaments' helical structure was interrupted by myosin binding. It is known that actin filaments are fragile by the application of a torque-force. The possibility is that such torque force may apply as an intrinsic and mandatory mechanical process for sliding. We would propose the new hypothesis of actomyosin sliding mechanism that might implicate all the observed phenomena in microscopic fields. Less

Report

(3 results)
  • 2003 Annual Research Report   Final Research Report Summary
  • 2002 Annual Research Report
  • Research Products

    (48 results)

All 2004 2003 2002 Other

All Journal Article (35 results) Book (1 results) Publications (12 results)

  • [Journal Article] Interaction of myosin/ADP/fluorometal complexes with fluorescent probes and direct observation using quick-freeze deep-etch electron microscopy.2004

    • Author(s)
      Maruta S.
    • Journal Title

      Journal of Biochemistry 136

      Pages: 57-64

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Journal Article] Three dimensional morphometrical analyses of astrocytic processes with the high voltage electron microscopy of thick Golgi preparations.2004

    • Author(s)
      Hama K.
    • Journal Title

      Journal of Neurocytology in press

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Journal Article] αB-crystallin-coated MAPs-microtubule resists nocodazole- and calcium-induced disassembly.2004

    • Author(s)
      Fujita Y.
    • Journal Title

      Journal of Cell Science 117

      Pages: 1719-1726

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Journal Article] 急速凍結ディープエッチ・レプリカ法:その特長と最近の企てについて2004

    • Author(s)
      片山栄作
    • Journal Title

      顕微鏡 39

      Pages: 133-136

    • NAID

      10013445089

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Journal Article] Interaction of myosin/ADP/fluorometal complexes with fluorescent probes and direct observation using quick-freeze deep-etch electron microscopy.2004

    • Author(s)
      Maruta S
    • Journal Title

      Journal of Biochemistry 136

      Pages: 57-64

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Journal Article] Three dimensional morphometrical analyses of astrocytic processes with the high voltage electron microscopy of thick Golgi preparations.2004

    • Author(s)
      Hama K.
    • Journal Title

      Journal of Neurocytology (in press)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Journal Article] αB-crystallin-coated MAPs-microtubule resists nocodazole-and calcium-induced disassembly2004

    • Author(s)
      Fujita Y.
    • Journal Title

      Journal of Cell Science 117

      Pages: 1719-1726

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Journal Article] Quick-freeze deep-etch replication : Its Advantageous Features and Recent Attempts2004

    • Author(s)
      Katayama E.
    • Journal Title

      MICROSCOPY 39

      Pages: 133-136

    • NAID

      10013445089

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Journal Article] Three-dimensional structural analysis of individual myosin heads under various functional states.2003

    • Author(s)
      Katayama E.
    • Journal Title

      Advances in Experimental Medicine & Biology. 538

      Pages: 297-305

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Journal Article] Motor function of unconventional myosin.2003

    • Author(s)
      Ikebe M.
    • Journal Title

      Advances in Experimental Medicine & Biology. 538

      Pages: 143-156

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Journal Article] Higher plant myosin XI moves processively on actin with 35nm steps at high velocity.2003

    • Author(s)
      Tominaga M.
    • Journal Title

      EMBO Journal 22

      Pages: 1263-1272

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Journal Article] トモグラフィの新たな挑戦:細胞内/溶液内における蛋白質1分子の3次元構成をめざして2003

    • Author(s)
      片山栄作
    • Journal Title

      HITACHI SCIENTIFIC INSTRUMENT NEWS 46

      Pages: 2-6

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Journal Article] Requirement of domain-domain interaction for conformational change and functional ATP hydrolysis in myosin2003

    • Author(s)
      Ito K.
    • Journal Title

      Journal of Biological Chemistry 278

      Pages: 31049-31057

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Journal Article] モーター蛋白質をナノアクチュエータとして使う2003

    • Author(s)
      平塚祐一
    • Journal Title

      化学 59

      Pages: 32-33

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Journal Article] ナノアクチュエータとしてのモーター蛋白質2003

    • Author(s)
      上田太郎
    • Journal Title

      蛋白質核酸酵素 48

      Pages: 1586-1594

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Journal Article] Three-dimensional structural analysis of individual myosin heads under various functional states.2003

    • Author(s)
      Katayama E.
    • Journal Title

      Advances in Experimental Medicine & Biology 538

      Pages: 297-305

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Journal Article] Motor function of unconventional myosin2003

    • Author(s)
      Ikebe M.
    • Journal Title

      Advances in Experimental Medicine & Biology 538

      Pages: 143-156

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Journal Article] Higher plant myosin XI moves processively on actin with 35 nm steps at high velocity.2003

    • Author(s)
      Tominaga M.
    • Journal Title

      EMBO Journal 22

      Pages: 1263-1272

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Journal Article] A challenge to three-dimensional reconstruction of single protein molecules in solution and in cells in situ by a new electron tomography.2003

    • Author(s)
      Katayama E.
    • Journal Title

      HITACHI SCIENTIFIC INSTRUMENT NEWS 46

      Pages: 2-6

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Journal Article] "Using motor proteins as nano-actuators"2003

    • Author(s)
      Hiratuka Y.
    • Journal Title

      Chemistry 59

      Pages: 32-33

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Journal Article] Motor proteins as nano-actuators2003

    • Author(s)
      Uyeda T.Q.P.
    • Journal Title

      Protein, Nucleic Acid, Enzyme 48

      Pages: 1586-1594

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Journal Article] Protein molecular motors as nano-actuators2003

    • Author(s)
      Uyeda T.Q.P.
    • Journal Title

      in "Frontier of Nano-Biotechnology"(Ueda, M.ed., CMG press)

      Pages: 348-359

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Journal Article] The motor domain determines the large step of myosin-V..2002

    • Author(s)
      Tanaka H.
    • Journal Title

      Nature 415

      Pages: 192-195

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Journal Article] Class VI myosin moves processively along actin filaments backward with large steps.2002

    • Author(s)
      Nishikawa S.
    • Journal Title

      Biochemical and Biophysical Research Communications 290

      Pages: 311-317

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Journal Article] Evidence for a novel, strongly bound acto-S1 complex carrying ADP and phosphate stabilized in the G680V mutant of Dictyostelium myosin II2002

    • Author(s)
      Uyeda T.Q.P.
    • Journal Title

      Biochemistry 30

      Pages: 9525-9534

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Journal Article] Tail chimeras of Dictyostelium myosin II support cytokinesis and other myosin II activities but not full development.2002

    • Author(s)
      Shu, S.
    • Journal Title

      Journal of Cell Science 115

      Pages: 4237-4249

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Journal Article] Amino acids 519-524 of Dictyostelium myosin II form a surface loop that aids actin binding by facilitating a conformational change.2002

    • Author(s)
      Uyeda T.Q.P.
    • Journal Title

      Journal Muscle Research and Cell Motility. 23

      Pages: 685-695

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Journal Article] Design and functional analysis of acto-myosin motor domain chimera proteins.2002

    • Author(s)
      Yokoyama K.
    • Journal Title

      Biochemical and Biophysical Research Communications 229

      Pages: 825-831

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Journal Article] The motor domain determines the large step of myosin-V.2002

    • Author(s)
      Tanaka H.
    • Journal Title

      Nature 415

      Pages: 192-195

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Journal Article] Class VI myosin moves processively along actin filaments backward with large steps2002

    • Author(s)
      Nishikawa S.
    • Journal Title

      Biochemical and Biophysical Research Communications 290

      Pages: 311-317

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Journal Article] Evidence for a novel, strongly bound acto-S1 complex Carrying ADP and phosphate stabilized in the G680V mutant of Dyctyostelium myosin II.2002

    • Author(s)
      Uyeda T.Q.P.
    • Journal Title

      Biochemistry 30

      Pages: 9525-9534

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Journal Article] Tail chimeras of Dictyoste/ium myosin II support cytokinesis and other myosin II activities but not full development.2002

    • Author(s)
      Shu, S.
    • Journal Title

      Journal of Cell Science 115

      Pages: 4237-4249

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Journal Article] Amino acids 519-524 of Dictyostelium myosin II form a Surface loop that aids actin binding by facilitating a conformational change.2002

    • Author(s)
      Uyeda T.Q.P.
    • Journal Title

      Journal Muscle Research and Cell Motility 23

      Pages: 685-695

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Journal Article] Design and functional analysis of acto-myosin motor domain chimera proteins.2002

    • Author(s)
      Yokoyama K.
    • Journal Title

      Biochemical and Biophysical Research Communications 299

      Pages: 825-831

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Journal Article] Requirement of domain-domain interaction for conformational change and functional ATP hydrolysis in myosin.2002

    • Author(s)
      Ito K.
    • Journal Title

      Journal of Biological Chemistry 278

      Pages: 31049-31057

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Book] ナノバイオテクノロジーの最前線(植田充美編)2003

    • Author(s)
      上田太郎
    • Total Pages
      12
    • Publisher
      シーエムシー出版
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] M.Tominaga, H.Kojima, E.Yokota H.Orii, R.Nakamori, E.Katayama, M.Anson, T.Shimmen, K.Oiwa: "Higher plant myosin XI moves processively on actin with 35 nm steps at high velocity"EMBO J.. 22. 1263-1272 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] E.Katayama, N.Ichise, N.Yaeguchi, T.Yoshizawa, S.Maruta, N.Baba: "Three-dimensional structural analysis of individual myosin heads under various functional states"Adv.in Exp.Med.& Bioi.. 538. 295-304 (2004)

    • Related Report
      2003 Annual Research Report
  • [Publications] Y.Fujita, E.Ohto, E.Katayama, Y.Atomi: "αB-crystallin-coated MAPs-microtubule resists nocodazole- and calcium-induced disassembly"J.Cell Sci.. (in press). (2004)

    • Related Report
      2003 Annual Research Report
  • [Publications] K.Hama, T.Arii, E.Katayama, M.Malton, M.H.Ellisman: "Three dimensional morphometrical analyses of astrocytic processes with the high voltage electron microscopy of thick Golgi preparations"J.Neurocytology. (in press). (2004)

    • Related Report
      2003 Annual Research Report
  • [Publications] Kohji Ito, Taro Q.P.Uyeda, Y.Suzuki, Kazuo Sutoh, Keiichi Yamamoto: "Requirement of domain-domain interaction for conformational change and functional ATP hydrolysis in myosin"Journal of Biological Chemistry. 278. 31049-31057 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Akira Nagasaki, Taro Q.P.Uyeda: "DWWA, a novel protein containing two WW domains and an IQ motif, is required for scission of the residual cytoplasmac bridge during cytokinesis in Dictyostelium"Molecular Biology of the Cell. 15. 435-446 (2004)

    • Related Report
      2003 Annual Research Report
  • [Publications] H.Tanaka: "The motor domain, not a long neck domain, determines the large step of myosin-V"Nature. 415. 192-195 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] S.Nishikawa: "Class VI myosin moves recessively along actin filaments backward with large steps"Biochemical and Biophysical Research Communications. 290. 311-317 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] K.Tamano: "Shigella Spa32 is an essential secretory protein for functional type III secretion machinery and uniformity of its needle length"Journal of Bacteriology. 184. 1244-1252 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] M.Tominaga: "Oiwa Higher plant myosin XI moves processively on actin with 35 nm steps at high velocity"EMBO Journal. (印刷中). (2003)

    • Related Report
      2002 Annual Research Report
  • [Publications] M.Fukuda: "The calcium-binding loops of the tandem C2 domains of synaptotagmin VII cooperatively mediate calcium-dependent oligomerization"Journal of Biological Chemistry. 277. 29315-29320 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] S.Yoshida: "Shigella deliver an effector protein to trigger host microtubule destabilization, which promotes Rac1 activity and efficient bacterial internalization"EMBO Journal. 21. 2923-2935 (2002)

    • Related Report
      2002 Annual Research Report

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Published: 2002-04-01   Modified: 2016-04-21  

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