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STRUCTURE AND FUNCTION OF MOLECULRAR SWITCH FOR CHROMOSOMAL REPLICATION

Research Project

Project/Area Number 14380330
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Molecular biology
Research InstitutionKyushu University

Principal Investigator

KATAYAMA Tsutomu  Kyushu University, Faculty of Pharmaceutical Sciences, Prof., 大学院・薬学研究院, 教授 (70264059)

Co-Investigator(Kenkyū-buntansha) NIKI Hironori  Kyushu University, National Institute of Genetic, Assoc.Prof., 放射線アイソトープセンター, 助教授 (70208122)
Project Period (FY) 2002 – 2003
Project Status Completed (Fiscal Year 2003)
Budget Amount *help
¥15,300,000 (Direct Cost: ¥15,300,000)
Fiscal Year 2003: ¥3,600,000 (Direct Cost: ¥3,600,000)
Fiscal Year 2002: ¥11,700,000 (Direct Cost: ¥11,700,000)
KeywordsDNA replication / Cell cycle / DnaA protein / E.coli / DNA polymerase / AAA+ motif / ATP / Antibiotics / 大腸菌
Research Abstract

In the E.coli cell cycle, function of the chromosomal replication initiator DnaA protein is tightly regulated. After the ATP-bound DnaA initiates replication, DnaA-ATP is hydrolyzed by the DNA-loaded clamp subunit of DNA polymerase III holoenzyme and Hda protein, yielding ADP-bound DnaA, the inactivated form. In this study, we analyzed structure-function relationship of Hda protein, and found that the camp-binding site on Hda. Moreover, we identified important amino acid residues in AAA+ motifs of this protein. In the cell cycle, ADP-DnaA is probably reactivated for the next round of initiation of chromosomal replication. We hypothesized that an unknown factor releases ADP from DnaA. As concentration of ATP is 10-fold higher than ADP in the cell, ATP can bind to DnaA, reactivating this protein. As a result of comprehensive biochemical search, we identified a candidate of such DnaA-reactivating factor.

Report

(3 results)
  • 2003 Annual Research Report   Final Research Report Summary
  • 2002 Annual Research Report
  • Research Products

    (33 results)

All Other

All Publications (33 results)

  • [Publications] Nishida, S., et al.: "A nucleotide switch in E.coli DnaA protein initiates the chromosomal replication : Evidence from a mutant DnaA protein defective in regulatory ATP hydrolysis in vitro and in vivo"Journal of Biological Chemistry. 277. 14986-14995 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Obita, T.et al.: "Determination of the secondary structure in solution of the Escherichia coli DnaA DNA-binding domain"Biochemical and Biophysical Research Communications. 299. 42-48 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Onogi, T.et al.: "Replication-dependent recruitment of the β subunit of DNA polymerase III from cytsolic spaces to replication forks in Escherichia coli"Journal of Bacteriology. 184. 867-870 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Fujikawa, N.et al.: "Structural basis of replication origin recognition by the DnaA protein"Nucleic Acid Research. 31. 2077-2086 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Higuchi, K.et al.: "Fate of DNA replication fork encountering a single DNA I during oriC plasmid DNA replication in vitro"Genes to Cells. 8. 437-449 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Su'etsugu, M., et al.: "Transcriptional control for initiation of chromosomal replication in Escherichia coli : fluctuation of the level of origin transcription ensures timely initiation"Genes to Cells. 8. 731-745 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Yoshida, Y.et al.: "Identification of the region of Escherichia coli DnaA protein required for specific recognition of the DnaA box"Cell.Mol.Life Sci.. 60. 1998-2008 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Su'etsugu, M.et al.: "Molecular mechanism of DNA replication-coupled inactivation of the initiator protein in Escherichia coli : Interaction of DnaA with the sliding clamp-loaded DNA and the sliding clamp-Hda complex"Genes to Cells. (In press). (2004)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] 片山 勉: "細菌染色体の複製制御機構"薬学研究の進歩. 19. 19-28 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] 片山 勉: "ゲノムの複製と分配(松影昭夫・正井久雄編)"シュプリンガーフェアラーク東京. 234 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] 片山 勉: "ゲノミクスとプロテオミクスの新展開〜生物情報の解析と応用〜(今中忠行監修)"(株)エヌ・ティー・エス. 1158 (2004)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Nishida, S., et al.: "A nucleotide switch in E.coli DnaA protein initiates the chromosomal replication : Evidence from a mutant DnaA protein defective in regulatory ATP hydrolysis in vitro and in vivo"Journal of Biological Chemistry. 277. 14986-14995 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Obita, T. et al.: "Determination of the secondary structure in solution of the Escherichia coli DnaA DNA-binding domain"Biochemical and Biophysical Research Communications. 299. 42-48 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Onogi, T. et al.: "Replication-dependent recruitment of the β subunit of DNA polymerase III from cytsolic spaces to replication forks in Escherichia coli"Journal of Bacteriology. 184. 867-870 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Fujikawa, N. et al.: "Structural basis of replication origin recognition by the DnaA protein"Nucleic Acid Research. 31. 2077-2086 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Higuchi, K. et al.: "Fate of DNA replication fork encountering a single DNA lesion during oriC plasmid DNA replication in vitro"Genes to Cells. 8. 437-449 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Su'etsugu, M., et al.: "Transcriptional control for initiation of chromosomal replication in Escherichia coli : fluctuation of the level of origin transcription ensures timely initiation"Genes to Cells. 8. 731-745 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Yoshida, Y. et al.: "Identification of the region of Escherichia coli DnaA protein required for specific recognition of the DnaA box"Cell.Mol.Life Sci.. 60. 1998-2008 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Su'etsugu, M., et al.: "Molecular mechanism of DNA replication-coupled inactivatidn of the initiator protein in Escherichia coli : Interaction of DnaA with the sliding clamp-loaded DNA and the sliding clamp-Hda complex"Genes to Cells. (in press). (2004)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Katayama, T.: "Regulatory mechanism for chromosome replication in bacteria"Advances in Pharmaceutical Sciences. 19. 19-28 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Katayama, T.: "Regulation of chromosome replication in prokayotes(Replication and Partition of the Genome)(A.Matsukage and H.Masai(eds.))"Springer-Verlag Tokyo. (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Katayama, T. et al.: "Replication system in the E.coli genome(Advances in Gendmics and Proteomic(T.Imanaka(ed.))"N.T.S.. (2004)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Su'etsug, M.et al.: "Transcriptional control for initiation of chromosomal replication in Escherichia coli : fluctuation of the level of origin transcription ensures timely initiation"Genes Cells. 8(9). 731-745 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Fujikawa, N.et al.: "Structural basis of replication origin recognition by the DnaA protein"Nucleic Acid Res.. 31(8). 2077-2086 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Yoshida, Y.et al.: "Identification of the region of Escherichia coli DnaA protein required for specific recognition of the DnaA box"Cell.Mol.Life Sci.. 60(9). 1998-2008 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Higuchi, K.et al.: "Fate of DNA replication fork encountering a single DNA lesion during oriC plasmid DNA replication in vitro"Genes Cells. 8(5). 437-449 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] 片山 勉: "細菌染色体の複製制御機構"薬学研究の進歩. 19. 19-28 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] 片山 勉, 他: "ゲノミクスとプロテオミクスの新展開〜生物情報の解析と応用〜"(株)エヌ・ティー・エス(印刷中). (2004)

    • Related Report
      2003 Annual Research Report
  • [Publications] Nishida, S., Fujimitsu, K., Sekimizu, K., Ohmura, T., Ueda, T., Katayama, T.: "A nucleotide switch in E. coil DnaA protein initiates the chromosomal replication : Evidence from a mutant DnaA protein defective in regulatory ATP hydrolysis in vitro and in vivo"Journal of Biological Chemistry. 277・17. 14986-14995 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Obita, T., Iwura, T., Su'etsugu, M., Yoshida, Y., Tanaka, T., Katayama, T., Ueda, T., Imoto, T.: "Determination of the secondary structure in solution of the Escherichia DNA-binding domain"Biochemical and Biophysical Research Communications. 299・1. 42-48 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Onogi, T., Ohsumi, K., Katayama, T., Hiraga, S.: "Replication-dependent recruitment of the β subunit of DNA polymerase III from cytsolic spaces to replication forks in Escherichia coli"Journal of Bacteriology. 184・3. 867-870 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Fujikawa, N., Kurumizaka, H., Nureki, O., Terada, T., Shirouzu, M., Katayama, T., Yokoyama, S.: "Structural basis of replication origin recognition by the DnaA protein"Nucleic Acid Research. (in press). (2003)

    • Related Report
      2002 Annual Research Report
  • [Publications] 片山 勉(分担執筆): "ゲノムの複製とその制御(松影昭夫・正井久雄編)"シュプリンガーフェアラーク東京. 234 (2002)

    • Related Report
      2002 Annual Research Report

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Published: 2002-04-01   Modified: 2016-04-21  

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