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The Principle of the Redox Activity Expression for FMN-binding Protein Based on its Higher Structure

Research Project

Project/Area Number 14560075
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field 応用微生物学・応用生物化学
Research InstitutionOsaka City University

Principal Investigator

KITAMURA Masaya  Osaka City University, Graduate School of Engineering, Lecturer, 大学院・工学研究科, 講師 (20244634)

Project Period (FY) 2002 – 2003
Project Status Completed (Fiscal Year 2003)
Budget Amount *help
¥3,100,000 (Direct Cost: ¥3,100,000)
Fiscal Year 2003: ¥700,000 (Direct Cost: ¥700,000)
Fiscal Year 2002: ¥2,400,000 (Direct Cost: ¥2,400,000)
KeywordsFMN / Redox Potential / Protein Engineering / Mutant / X-ray Crystallography / sulfate-reducing Bacteria / Dissociation Constant / Flavodoxin
Research Abstract

I studied FMN-binding protein (FMN-bp) from the sulfate-reducing bacteria by use of protein-engineering methods. Comparing the amino acid sequence of FMN-bp with that of flavodoxin, which has almost same molecular weight and binds FMN as a prosthetic group, the only Thir-Trp-Asn sequence is the same each other. Using site-directed mutagenesis, 9 mutant FMN-bps were produced by genetic engineering, and were disucussed about the influences of this sequence on the binding of FMN and the redox potential which was measured using safranine T as a mediator. The redox potential of every mutant that changed Trp residue to Ala, Tyr, Phe or His residue shifted rather positive (+8 to +18 mV). This result suggested that Trp residue might not be responsible on redox potential. However, this residue was indicated to be important on binding FMN. On the other hand, the mutant that changed Asn residue to Gin or Asp residue showed little difference on both binding FMN and redox potential. The Asn residue is least conserved in Thr-Trp-Asn and my result indicated that Asn residue was least important in these residues. The redox potential of the mutant that changed Thr residue to Ser or Val residue shifted rather (5 mV) or much (about 60 mV) negative, respectively. This result indicated that it is important on redox potential that this position keeps hydrophilic. Then the mutant that changed Thr residue to Val residue was crystallized and determined the higher structure using x-ray. We obtained the data whose resolution was over 1.5A and now we are proposing its model.

Report

(3 results)
  • 2003 Annual Research Report   Final Research Report Summary
  • 2002 Annual Research Report
  • Research Products

    (15 results)

All Other

All Publications (15 results)

  • [Publications] Noboru Mataga: "Femtosecond Fluorescence Dynamics of Flavoproteins : Comparative Studies on Flavodoxin, Its Site-Directed Mutants and Riboflavin Binding Protein Regarding Ultrafast Electron Transfer in Protein Nanospaces"Journal of Physical Chemistry. B106巻35号. 8917-8920 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Satoshi Sakamoto: "Highly Efficient Catalytic RNA Cleavage by the Cooperative Action of Two Cu(II) Complexes Embodied within an Antisense Oligonucleotide"Nucleic Acids Research. 31巻3号. 1416-1425 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Takeshi Nakanishi: "Cloning and Expression of the Superoxide Dismutase Gene from the Obligate Anaerobic Bacterium Desulfovibrio vulgaris (Miyazaki F)"Journal of Biochemistry. 133巻5号. 387-393 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Masaya Kitamura: "Cloning and Expression of the Enolase Gene from Desulfovibrio vulgaris (Miyazaki F)"Biochimica et Biophysica Acta. 1676巻. 172-181 (2004)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Noboru Mataga, Haik Chorsrowjan, Seiji Taniguchi, Fumio Tanaka, Nobuo Kido, Masaya Kitamura: "Femtosecond Fluorescence Dynamics of Flavoproteins : Comparative Studies on Flavodoxin, Its Site-Directed Mutants and Riboflavin Binding Protein Regarding Ultrafast Electron Transfer in Protein Nanospaces"J.Phys.Chem.B. 106(35). 8917-8920 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Satoshi Sakamoto, Takashi Tamura, Takako Furukawa, Yasuo Komatsu, Eiko Ohtsuka, Masaya Kitamura, Hideo Inoue: "Highly efficient catalytic RNA cleavage by the cooperative action of two Cu(II) complexes embodied within an antisense oligonucleotide"Nucl.Acids Res.. 31(5). 1416-1425 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Takeshi Nakanishi, Hideo Inoue, Masaya Kitamura: "Cloning and Expression of the Superoxide Dismutase Gene from the Obligate Anaerobic Bacterium Desulfovibrio vulgaris (Miyazaki F)"J.Biochem.. 133. 387-393 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Masaya Kitamura, Yuki Takayama, Shuichi Kojima, KyokoKohno, Hideaki Ogata, Yoshiki Higuchi, Hideo Inoue: "Cloning and Expression of the Enolase Gene from Desulfovibrio vulgaris (Miyazaki F)"Biochim.Biophys.Acta. 1676. 172-181 (2004)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Noboru Mataga: "Femtosecond Fluorescence Dynamics of Flavoproteins : Comparative Studies on Flavodoxin, Its Site-Directed Mutants and Riboflavin Binding Protein Regarding Ultrafast Electron Transfer in Protein Nanospaces"Journal of Physical Chemistry. B106巻35号. 8917-8920 (2002)

    • Related Report
      2003 Annual Research Report
  • [Publications] Satoshi Sakamoto: "Highly Efficient Catalytic RNA Cleavage by the Cooperative Action of Two Cu(II) Complexes Embodied within an Antisense Oligonucleotide"Nucleic Acids Research. 31巻5号. 1416-1425 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Takeshi Nakanishi: "Cloning and Expression of the Superoxide Dismutase Gene from the Obligate Anaerobic Bacterium Desulfovibrio vulgaris (Miyazaki F)"Journal of Biochemistry. 133巻3号. 387-393 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Masaya Kitamura: "Cloning and Expression of the Enolase Gene from Desulfovibrio vulgaris(Miyazaki F)"Biochimica et Biophysica Acta. 1676巻. 172-181 (2004)

    • Related Report
      2003 Annual Research Report
  • [Publications] Noboru Mataga: "Femtosecond Fluorescence Dynamics of Flavoproteins : Comparative Studies on Flavodoxin, Its Site-Directed Mutants and Riboflavin Binding Protein Regarding Ultrafast Electron Transfer in Protein Nanospaces"Journal of Physical Chemistry. B106巻35号. 8917-8920 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Satoshi Sakamoto: "Highly Efficient Catalytic RNA Cleavage by the Cooperative Action of Two Cu(II) Complexes Embodied within an Antisense Oligonucleotide"Nucleic Acids Research. 31巻5号. 1416-1425 (2003)

    • Related Report
      2002 Annual Research Report
  • [Publications] Takeshi Nakanishi: "Cloning and Expression of the Superoxide Dismutase Gene from the Obligate Anaerobic Bacterium Desulfovibrio vulgaris (Miyazaki F)"Journal of Biochemistry. 133巻3号(in press). (2003)

    • Related Report
      2002 Annual Research Report

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Published: 2002-04-01   Modified: 2016-04-21  

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