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The elucidation of molecule evolution with respect to chiral recognition of enzymes.

Research Project

Project/Area Number 14560286
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Applied molecular and cellular biology
Research InstitutionUniversity of Yamanashi

Principal Investigator

UI Sadaharu  Univ. of Yamanashi, Interdisciplinary Graduate School of Medicine and Engineering, Professor, 大学院・医学工学総合研究部, 教授 (80115310)

Co-Investigator(Kenkyū-buntansha) KUSUNOKI Masami  Osaka Univ., Institute for protein Research, Associate Professor, 蛋白質研究所, 助教授 (90135749)
Project Period (FY) 2002 – 2003
Project Status Completed (Fiscal Year 2003)
Budget Amount *help
¥3,500,000 (Direct Cost: ¥3,500,000)
Fiscal Year 2003: ¥1,000,000 (Direct Cost: ¥1,000,000)
Fiscal Year 2002: ¥2,500,000 (Direct Cost: ¥2,500,000)
Keywords2,3-butanediol / acetoin / 2,3-butanediol dehydrogenase / stereospecificity / chiral / SDR family / X-ray crystallography / protein engineering / short chain dehydrogenase / reductase family / X-ray crystallography / shrt chain dehydrogenase
Research Abstract

The research contents : It was clarified that meso-2,3-butanediol dehydrogenase (BDH) and L-BDH are short chain dehydrogenase / reductase (SDR) enzymes and have a similar structure. Then, using the structural knowledge of these enzymes, the elucidation of molecule evolution, with respect to enzyme functions such as stereospecificity and stability, was attempted. Various BDH-mutants were prepared by exchanging the domains and the amino acids in the active sites between meso-BDH and L-BDH. Next, crystal structure analyses of some of the mutants were performed. In additions, the influence on the stereo-structure of various mutations was analyzed by molecule calculation techniques. Furthermore, the influences of the enzyme structure on kinetic parameters were analyzed. Based on the results, the molecule evolution between L-BDH and meso-BDH was considered from the standpoint of an enzyme function.
Result : Interesting results were obtained mainly on following: 1)Amino acid residues related t … More o Km value, 2)Amino acid residues related to Stereospecificity, 3)Analysis of the recognition mechanism for long-chain substrates, 4)Analysis of the dehydrogenase reaction mechanism in 3R-configulation of substrate, 5)Analysis of the substrate recognition mechanism from the competitive-inhibition constant of 2-mercaptoethanol, 6)Analysis of the influence of the mutation-point on Vmax, and 7)Analysis of the structure contributing to stability. Using the elucidated information, the characteristics of the enzyme have been improved regarding structure. That is, unstable wild-type L-BDH was successfully changed to a new L-BDH with high stability. Moreover, these results offered a fundamental indicator for the appropriate alteration to other SDR enzymes having a structure similar to that of BDH.
The production and manufacture methods of L-BD were developed using the L-BDH with newly created high stability. The efficient production of L-BD was not established until now. That is, production on the thousands of mg/l level was attained at about an 80% conversion rate from diacetyl as substrate by expressing the meso-BDH and the mutant-L-BDH simultaneously in transgenic E. coli.
At this time, the above results are under contribution as some reports. Less

Report

(3 results)
  • 2003 Annual Research Report   Final Research Report Summary
  • 2002 Annual Research Report

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Published: 2002-04-01   Modified: 2016-04-21  

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