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Structural investigation of aggregates in various functional complexes, polymers and biomolecules hi solution by using PFG-NMR analysis.

Research Project

Project/Area Number 14571995
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Chemical pharmacy
Research InstitutionChiba University

Principal Investigator

SEKI Hiroko  Chiba University, Chemical Analysis Center, Research Associate, 分析センター, 助手 (60114245)

Project Period (FY) 2002 – 2003
Project Status Completed (Fiscal Year 2003)
Budget Amount *help
¥1,800,000 (Direct Cost: ¥1,800,000)
Fiscal Year 2003: ¥600,000 (Direct Cost: ¥600,000)
Fiscal Year 2002: ¥1,200,000 (Direct Cost: ¥1,200,000)
KeywordsPFG NMR / cold spray ionization (CSI)-MS / diffusion / hydrogen bonding / chain structure / steroid compounds / X-ray analysis / protein-ligand complex / HMBC / 分子クラスター / 生体分子 / 緩和時間 / パルスシーケン
Research Abstract

PFG NMR, especially used for diffusion experiment, and CSI (cold-spray ionization)-MS has been our major subject for solution structure analysis in recent years. X-ray analysis elucidating solid structure is also contributed to this study in some cases. It was found that some steroid compounds behave as the large-scale aggregated chain structure in solution. This unprecedented phenomenon was definitely confirmed by using CSI-MS and PFG NMR Characteristic chain structures based on strong intermolecular hydrogen bonding in the case of cortisone was clearly observed in solution exhibiting series of plural clusters, which was assigned up to thirteen aggregates. On the other hand, progesterone slightly weak intermolecular interaction was predicted form CSI-MS because ion peaks assigned only up to trimeric cluster. This result is identical with that obtained from X-ray analysis. Recently, it was demonstrated that NMR diffusion studies is an useful method for the characterization of a variety … More of interaction system in solution. NMR diffusion experiments were carried out on a LA-600 by using BPP-STE method. Calibration curve obtained from observed diffusion coefficients and calculated molecular volume. In the case of progesterone, observed diffusion coefficient (6.98×10^<-10>m^2/s) is as nearly same as calculated. The reason for this result indicated that progesterone has no intermolecular interaction in solution as well as in the crystal. On the contrary, diffusion coefficient of cortisone (5.58×10^<-10>m^2/s) exhibits slightly different from calculated values, presumably because hydrogen bonding occurs to afford molecular cluster. In consequence, these steroid compounds appeared to maintain ordered clusters, based on hydrogen, bonding in diluted solution, instead diffused randomly as individual molecules, as has been generally accepted.
Multidimensional T_<1ρ^->, diffusion-filtered and diffusion-ordered NOESY techniques are very suitable techniques for identifying segments of a ligand binding with a protein receptor in the drug discovery process. Less

Report

(3 results)
  • 2003 Annual Research Report   Final Research Report Summary
  • 2002 Annual Research Report
  • Research Products

    (18 results)

All Other

All Publications (18 results)

  • [Publications] K.Shikii, S.Sakamoto, H.Seki, H.Utsumi, K.Yamaguchi: "Narcissistic aggregation of steroid compounds in diluted solution elucidated by CSI-MS, PFG NMR and X-ray analysis"Tetrahedron. 60. 3487-3492 (2004)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] H.Ttsumi, H.Seki, K.Yamaguchi, M.Tashiro: "Segment Identification of a Ligand binding with a Protein Receptor Using Multidimentional T_<1□>-, Diffusion-Filtered and Difufusion-OrderedNOESY Experimentas"Anal.Sci.. 19. 1441-1443 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] H.Kabasawa, M.Ikeno, M.Suzukawa, K.Higuchi, K.Yanagisawa, H.Seki, T.Tokunaga, T.Ishikawa: "Chemistry of N-Hydroxyguanidines : Photo-Sensitized Oxygenation and Reaction with Nitric Oxide"Helv.Chim.Acta. 85. 2636-2643 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Y.Tozuka, A.Ito, H.Seki, T.Oguchi, K.Yamamoto: "Characterization and Quantitation of Clanthromycin Polymorphs by Powder X-Ray Diffractometry and Solid-State NMR Spectroscopy"Chem.Pharm.Bull.. 50(8). 1128-1130 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] M.Kitajima, S.Yoshida, K.Yamagata, M.Nakamura, H.Takayama, K.Saito, H.Seki, N.Aimi: "Camptotencin-related alkaloids from hairy roots of Ophiorrhiza pumila"Tetrahedron. 58. 9169-9178 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] M.-J Cheng, B.Jayaprakasam, T.Ishikawa, H.Seki, I.-L.Tsai, J.-J.Wang, I.-S Chen: "Chemical and Cytotoxic Constituents from the Stem of Machilus zuihoensis"Helv.Chim.Acta.. 85. 1909-1914 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] H.Ishii, K.Yamaguchi, H.Seki, S.Sakamoto, Y.Tozuka, T.Oguchi, K.Yamamoto: "Crystal Structure of the Alcoholates and the Ansolvate of PNU-97018, and Angiotensin II Receptor Antagonist"Chem.Pharm.Bull.. 50(8). 1022-1027 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] K.Shikii, S.Sakamoto, H.Seki, H.Utsunii, K.Yamaguchi: "Narcissistic aggregation of steroid compounds in diluted solution elucidated by CSI-MS, PFG NMR and X-ray analysis"Tetrahedron. 60. 3487-3492 (2004)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] H.Utsumi, H.Seki, K.Yamaguchi, M.Tashiro: "Segment Identification of a Ligand binding with a Protein Receptor Using Multidimentional T1 ρ -, Diffusion-Filtered, and Diffusion-Ordered NOESY Experimentas"Anal.Sci.. 19. 1441-1443 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] H.Kabasawa, M.Ikeno, M.Suzukawa, K.Higuchi, K.Yanagisawa, H.Seki, T.Tokunaga, T.Ishikawa: "Chemistry of N-Hydroxyguanidines : Photo-Sensitized Oxygenation and Reaction with Nitric Oxide"Helv.Chim.Acta. 85. 2636-2643 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Y.Tozuka, A.Ito, H.Seki, T.Oguchi, K.Yamamoto: "Characterization and Quantitation of Clarithromycin Polymorphs by Powder X-Ray Diffractometry and Solid-State NMR Spectroscopy"Chem.Pharm.Bull.. 50(8). 1128-1130 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] M.Kitajima, S.Yoshida, K.Yamagata, M.Nakamura, H.Takayama, K.Saito, H.Seki, N.Aimi: "Camptotencin-related alkaloids, from hairy roots of Ophiorrhiza pumila"Tetrahedron. 58. 9169-9178 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] M.-J Cheng, B.Jayaprakasam, T.Ishikawa, H.Seki, I.--L.1 ai, J.-J.Wang, I.-S Chen: "Chemical and Cytotoxic Constituents from the Stem of Machilus zuthoensis"Helv.Chim.Acta. 85. 1909-1914 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] H.Ishii, K.Yamaguchi, H.Seki S.Sakamoto, Y.Tozuka, T.Oguchi, K.Yamamoto: "Crystal Structure of the Alcoholates and the Ansolvate of PNU-97018, and Angiotensin II Receptor Antagonist"Chem.Pharm.Bull.. 50(8). 1022-1027 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] H.Utsumi: "Segment Identification of a Ligand binding with a Protein Receptor Using Multidimentional T_<1□^->, Diffusion-Filtered and Difufusion-Ordered NOESY Experimentas"Anal.Sice.. 19. 1441-1443 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] K.Shikii: "Narcissistic aggregation of steroid compounds in diluted solution elucidated by CSI-MS, PFG NMR and X-ray analysis"Tetrahedron. 60. 3487-3492 (2004)

    • Related Report
      2003 Annual Research Report
  • [Publications] Y.Sei: "Observation of Waters Bound to a Protein Using Temperature Dependent Cold-Spray Ionization Mass Spectrometry"Angew.Chem.Int.Ed., revised Manuscript (No. Z 53918). (2004)

    • Related Report
      2003 Annual Research Report
  • [Publications] 関宏子, 敷井和彰, 坂本茂, 山口健太郎: "The crystal packing probe of hydrogen bond interaction by diffusion NMR"アメリカ化学会誌. (投稿準備中).

    • Related Report
      2002 Annual Research Report

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Published: 2002-04-01   Modified: 2016-04-21  

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