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Lost organization of urate degrading enzymes in peroxisomes during animal evolution

Research Project

Project/Area Number 14580651
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Functional biochemistry
Research InstitutionKyushu Dental College

Principal Investigator

NOGUCHI Tomoo  Kyushu Dental College, Dept.of dentistry, Professor, 歯学部, 教授 (30073688)

Co-Investigator(Kenkyū-buntansha) MASUDA Wataru  Kyushu Dental College, Dept.of dentistry, Assistant, 歯学部, 助手 (80295865)
HAYASHI Sueko  Kyushu Dental College, Dept.of dentistry, Assistant Professor, 歯学部, 講師 (30047807)
FUJIWARA Satoko  Kyushu Dental College, Dept.of dentistry, Associate Professor, 歯学部, 助教授 (20047806)
Project Period (FY) 2002 – 2003
Project Status Completed (Fiscal Year 2003)
Budget Amount *help
¥3,000,000 (Direct Cost: ¥3,000,000)
Fiscal Year 2003: ¥1,200,000 (Direct Cost: ¥1,200,000)
Fiscal Year 2002: ¥1,800,000 (Direct Cost: ¥1,800,000)
KeywordsAnimal evolution / Purine degradation / Urate degradation / Allantoinase / Allantoicase / Ureidoglycollate lyase / Peroxisomes / Frog allantoinase cDNA / ウレイドグリコレートリアーゼ
Research Abstract

End products of purine degradation vary from species to species. The end product of purine degrade is urate in humans, hominoid primates and new world monkeys, allantoin by uricase in mammals other than primates and old world monkeys, allantoiate by allantoinase(ALN) in some teleosts, urea by allantoicase(ALC) in fish and amphibians and ammonia by urease in many invertebrates.
The degradation of purines to urate is common to all animal species, while the degradation of urate is much less complete in higher animals. We have reported that in marine fish, the degrading enzymes of purines to urate are located in the cytosol, while the degrading enzymes of urate to urea are located in the peroxisomes. This shows that in purine degradation, peroxisomal enzymes have been lost during evolution. ALN and ALC are different proteins in fish liver, whereas the two enzymes form a complex in amphibian liver.
We examined how the mechanism to form amphibian allantoinase-allantoicase complex(ALNC) is lost … More in higher animals during animal evolution (1).The cDNA encoding ALN of the subunit of amphibian ALNC was sequenced. We got some clones from λ gt11 library using anti ALN of bullfrog (2).In saltwater fish liver, the end products of purine degradation were urea and glyoxylate. Glyoxylate may be converted to glycine by alanine : glyoxylate aminotransferase for the reutilization of purine carbons (3).It is generally accepted that all of the allantoin-degrading enzymes were lost during mammalian evolution. Surprisingly, ureidoglycollate lyase has been found in mammalian tissue. The apparent Km(17mM) of the rat enzyme for ureidoglycollate was much higher than that (0.33mM)of fish-liver ureidoglycollate lyase. Mammals have lost the function in vivo by elevating the Km for ureidoglycollate during evolution (4).We reported the isolation of cDNA encoding frog catalase from a liver library cloned in λgt11. The 528 amino acid sequence deduced from the nucleotid sequence has a calculated Mr of 59871. We found free ALN only with ALN activity which is differ from ALN subunit composed of ALNC. The enzyme shows the middle type of fish ALN and amphibian ALNC (5).We separated the fish with three kinds of habitat : salt water, brackish water and fresh water and with three kinds of food habit : carnivorous,herbivorous and omnivovous. We determined the subcellular distribution of ALN, peroxisomes matrix or cytosoles. We determined ALC type, peroxisomal matrix or membrane-bound of outer surface of peroxisomes. The cDNA of each fish, was synthesized with RT-PCR using mRNA and The full-length was determined by the DNA sequencer. We compared the results with subunit of frog ALN and Xenopus liver ALC of C-end amino acid sequence and determined the signal of transference to and from distribution in peroxisomes Less

Report

(3 results)
  • 2003 Annual Research Report   Final Research Report Summary
  • 2002 Annual Research Report
  • Research Products

    (30 results)

All Other

All Publications (30 results)

  • [Publications] Masuda, W.: "Free D-aspartic acid in rat salivary glands."Arch.Biochem.Biophys.. 420. 46-54 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Noguchi, T.: "Evolution of purine-degrading enzymes in animal peroxisomes."J.Kyushu Dent.Soc.. 57・3. 42-51 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Noguchi, T.: "Amino acid and glyoxylate metabolism in animal peroxisomes."J.Kyushu Dent.Soc.. 57・4. 85-94 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Masuda, W.: "D-aspartic acid in bovine dentine non-collagenous phosphoprotein."Arch.Oral Biol.. 47. 757-762 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Masuda, W.: "A new type of allantoinase is amphibian liver."Biosci.Biotechnol.Biochem.. 65・11. 468-472 (2001)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Hayashi, S.: "Evolution of Urate-degrading Enzymes in animal Peroxisome"Cell Biochem.Biophys.. 32. 123-129 (2000)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] 監修 西澤 俊樹: "分子生物学歯科小事典"財団法人 口腔保健協会. 469 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Masuda, W., Nouso, C., Kitamura, C., Terashita, M., Noguchi, T.: "Free D-aspartic acid in rat salivary glands"Arch.Biochem.Biophys.. 420. 46-54 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Noguchi, T., Fujiwara, S., Hayashi, S.: "Evolution of purine-degrading enzymes in animal peroxisomes"J.Kyushu Dent.Soc.. 57. 42-51 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Noguchi, T., Fujiwara, S., Hayashi, S.: "Amino acids and glyoxylate metabolism in animal peroxisomes"J.Kyushu Dent.Soc.. 57. 85-94 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Masuda, W., Nouso, C., Terashita, M., Noguchi, T.: "D-aspartic acid in bovine dentine non-collagenous Phosphoprotein"Archi.Oral Biol.. 47. 757-762 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Masuda, W., Fujiwara, S., Noguchi, T.: "A new type of allantoinase is amphibian liver"Biosci.Biotechnol.Biochem.. 65. 2558-2560 (2001)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Masuda, W., Noguchi, T.: "ADP-ribosyl cyclase in rat salivary glands"Biochem.Biophys.Res.Commun.. 270. 468-472 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Maki, K., Hayashi, S., Nishioka, T., Kimura, M., Noguchi T.: "A new type of matrix vesicles is found in fetal bovine tracheal cartilage"Connect.Tissue Res. 41. 109-115 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Hayashi, S., fujiwara, S., Noguchi, T.: "Evolution of urate-degrading enzymes in animal peroxisomes"Cell Biochem.Biophys.. 32. 123-129 (2000)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Fujiwara, S., Noguchi, T: "catecholeamine"Small encyclopedia for dental molecular biology (ed bu, Toshiki nishizawa) (the Society for Oral Health, Tokyo). June 30. 67 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Hayashi, S., Noguchi, T: "episome"Small encyclopedia for dental molecular biology (ed bu, Toshiki nishizawa) (the Society for Oral Health, Tokyo). June 30. 67 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Hayashi, S., Noguchi T: "ribosome"Small encyclopedia for dental molecular biology (ed bu, Toshiki nishizawa) (the Society for Oral Health, Tokyo). June 30. 67 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Masuda, W.: "Free D-aspartic acid in rat salivary glands."Arch. Biochem. Biophys.. 420. 46-54 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Noguchi, T.: "Evolution of purine-degrading enzymes in animal peroxisomes"J. Kyushu Dent. Soc.. 57・3. 42-51 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Noguchi, T.: "Amino acid and glyoxylate metabolism in animal peroxisomes"J. Kyushu Dent. Soc.. 57・4. 85-94 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Masuda, W.: "D-Aspartic acid in bovine dentine non-collagenase phoshoprotein"Archives of Oral Biology. 47. 757-762 (2002)

    • Related Report
      2003 Annual Research Report
  • [Publications] 監修 西澤 俊樹: "分子生物学歯科小事典"財団法人 口腔保健協会. 469 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Masuda, W.: "D-Aspartic acid in bovine dentine non-collagenous phosphoprotein"Archives of Oral Biology. 47. 757-762 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Masuda, W.: "A New Type of Allantoinase in Amphibian Liver"Biosci. Biotechnol. Biochem. 65(11). 2588-2560 (2001)

    • Related Report
      2002 Annual Research Report
  • [Publications] Masuda, W.: "ADP-ribosyl cyclase in rat salivary glands"Biochem, Biophys, Res. Commun.. 270. 469-472 (2000)

    • Related Report
      2002 Annual Research Report
  • [Publications] Hayashi, S.: "Evolution of Urate-degrading Enzyme in animal Peroxisome"Cell Bioehem. Biophys. Int Sympo/CREST research conference Peroxisome : Biogenesis, Function and Disease. 32. 123-129 (2000)

    • Related Report
      2002 Annual Research Report
  • [Publications] Sakuraba, H.: "Metabolism of glyoxylate, the end product of purine degradation, in liver peroxisomes of fresh water fish"Biochem, Biophys, Res. Commun.. 229. 603-606 (1996)

    • Related Report
      2002 Annual Research Report
  • [Publications] Fujiwara, S.: "Degradation of purines ; only ureidoglycollate lyase out of four allantoin degrading enzymes is present in mammals"Biochem. J.. 312. 315-318 (1995)

    • Related Report
      2002 Annual Research Report
  • [Publications] T.Noguchi: "Comparative Biochemistry of animal Peroxisomes"Research Signpost. 28 (1997)

    • Related Report
      2002 Annual Research Report

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Published: 2002-04-01   Modified: 2016-04-21  

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