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Investigation of the mechanism of D-ring inversion in porphyrin biosynthesis

Research Project

Project/Area Number 14580658
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Functional biochemistry
Research InstitutionKurume University

Principal Investigator

OMATA Yoshiaki  Kurume University, School of Medicine, Associate Professor, 医学部, 助教授 (20268840)

Co-Investigator(Kenkyū-buntansha) NOGUCHI Masato  Kurume University, School of Medicine, Professor, 医学部, 教授 (10124611)
SAKAMOTO Hiroshi  Kurume University, School of Medicine, Lecturer, 医学部, 講師 (70309748)
Project Period (FY) 2002 – 2004
Project Status Completed (Fiscal Year 2004)
Budget Amount *help
¥2,500,000 (Direct Cost: ¥2,500,000)
Fiscal Year 2004: ¥500,000 (Direct Cost: ¥500,000)
Fiscal Year 2003: ¥1,200,000 (Direct Cost: ¥1,200,000)
Fiscal Year 2002: ¥800,000 (Direct Cost: ¥800,000)
Keywordsprophyrin / uroporphyrinogen / uroporphyrinogen III syntase / congenital erythropoietic porphyria / hydroxymethylbilane / hydroxymethylbilane synthase
Research Abstract

The side-chain asymmetry of physiological porphyrins is produced by the cooperative action of hydroxymethylbilane synthase and uroporphyrinogen III synthase(UROS). Although the role of UROS is essential for the chemistry of porphyrin biosynthesis, many aspects, structural as well as mechanical, of UROS have yet to be studied. An expression system in E.coli and a purification procedure for human UROS were established in this project. The enzyme in the lysate was unstable, but glycerol is able to prevent the activity loss in the lysate for at least a few days after lysis. The enzyme therefore was purified in the presence of glycerol, the entire procedure being completed within 48 hr after lysis with the aid of an HPLC system. The purified enzyme showed remarkable thermostability, particularly when kept in phosphate buffer containing DTT or EDTA, indicating that the enzyme activity may depend on its oxidation state. Examination of the relationship between the number of accessible Cys residues and the remaining activity during heat inactivation showed that a particular Cys residue is involved in activity loss. From the crystal structure of human UROS, this Cys residue was considered to be Cys73, which is deeply buried inside the enzyme. A mutation of Cys73 to Arg is most common in congenital erythropoietic porphyria(CEP), in which UROS is deficient, having been found in the allele of 33% of CEP patients. These findings suggest that Cys73 of human UROS has an important role in catalysis. From the results of chemical modifications that indicate the role of several basic residues, Lys, Arg and His residues around putative active site were mutated. The activity and kinetic parameters of mutated enzymes suppose that substrate is bound between two opposite residues and surrounded by the other residues.

Report

(4 results)
  • 2004 Annual Research Report   Final Research Report Summary
  • 2003 Annual Research Report
  • 2002 Annual Research Report
  • Research Products

    (33 results)

All 2005 2004 2003 2002 Other

All Journal Article (27 results) Publications (6 results)

  • [Journal Article] Involvement of NADPH in the interaction between heme oxygenase-1 and cytochrome P450 reductase.2005

    • Author(s)
      Yuichiro Higashimoto
    • Journal Title

      The Journal of Biological Chemistry 280

      Pages: 729-737

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Involvement of NADPH in the interaction between heme oxygenase-1 and cytochrome P450 reductase.2005

    • Author(s)
      Y.Higashomoto, Hiroshi Sakamoto, Shunsuke Hayashi, Masakazu Sugishima, Keiichi Fukuyama, Graham Palmer, Masato Noguchi
    • Journal Title

      J.Biol.Chem. 280-1

      Pages: 729-737

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Involvement of NADPH in the interaction between heme oxygenase-1 and cytochrome P450 reductase.2005

    • Author(s)
      Yuichiro Higashimoto
    • Journal Title

      The Journal of Biological Chemistry 280・1

      Pages: 729-737

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Hydroxylamine and hydrazine bind directly to the heme iron of the heme-hemeoxygenase-1 complex.2004

    • Author(s)
      Hiroshi Sakamoto
    • Journal Title

      Journal of Inorganic Biochemistry 98

      Pages: 1223-1228

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] CO-trapping site in hemeoxygenase revealed by photolysis of its CO-bound heme complex : Mechanism of escaping from product inhibition.2004

    • Author(s)
      Masakazu Sugishima
    • Journal Title

      Journal of Molecular Biology 341

      Pages: 7-13

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Characterization of rat heme oxygenase-3 gene. Implication of processed pseudogenes derived from heme oxygenase-2 gene.2004

    • Author(s)
      Shunsuke Hayashi
    • Journal Title

      GENE 336

      Pages: 241-250

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Purification and characterization of human uroporphyrinogen III synthase expressed in Escherichia coli.2004

    • Author(s)
      Yoshiaki Omata
    • Journal Title

      Journal of Biochemistry 136

      Pages: 211-220

    • NAID

      10016201529

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Hydroxylamine and hydrazine bind directly to the heme iron of the heme-heme oxygenase-1 complex.2004

    • Author(s)
      Hiroshi Sakamoto, Yuichiro Higashimoto, Shunsuke Hayashi, Masakazu Sugishima, Keiichi Fukuyama, Graham Palmer, Masato Noguchi
    • Journal Title

      J.Inorg.Biochem. 98-7

      Pages: 1223-1228

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] CO-trapping site in heme oxygenase revealed by photolysis of its CO-bound heme complex : Mechanism of escaping from product inhibition.2004

    • Author(s)
      Masakazu Sugishima, Hiroshi Sakamoto, Masato Noguchi, Keiichi Fukuyama
    • Journal Title

      J.Mol.Biol. 341-1

      Pages: 7-13

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Characterization of rat heme oxygenase-3 gene. Implication of processed pseudogenes derived from heme oxygenase-2 gene.2004

    • Author(s)
      Shunsuke Hayashi, Yoshiaki Omata, Hiroshi Sakamoto, Yuichiro Higashimoto, Takayuki Hara, Yasuhiro Sagara, Masato Noguchi
    • Journal Title

      GENE 336-2

      Pages: 241-250

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Purification and characterization of human uroporphyrinogen III synthase expressed in Escherichia coli.2004

    • Author(s)
      Yoshiaki Omata, Hiroshi Sakamoto, Yuichiro Higashimoto, Shunsuke Hayashi, Masato Noguchi
    • Journal Title

      J.Biochem. 136-2

      Pages: 211-220

    • NAID

      10016201529

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Hydroxylamine and hydrazine bind directly to the heme iron of the heme-heme oxygenase-1 complex.2004

    • Author(s)
      Hiroshi Sakamoto
    • Journal Title

      Journal of Inorganic Biochemistry 98・7

      Pages: 1223-1228

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Characterization of rat heme oxygenase-3 gene. Implication of processed pseudogenes derived from heme oxygenase-2 gene.2004

    • Author(s)
      Shunsuke Hayashi
    • Journal Title

      GENE 336・2

      Pages: 241-250

    • Related Report
      2004 Annual Research Report
  • [Journal Article] CO-trapping site in heme oxygenase revealed by photolysis of its CO-bound heme complex : Mechanism of escaping from product inhibition.2004

    • Author(s)
      Masakazu Sugishima
    • Journal Title

      Journal of Molecular Biology 341・1

      Pages: 7-13

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Purification and characterization of human uroporphyrinogen III synthase expressed in Escherichia coli.2004

    • Author(s)
      Yoshiaki Omata
    • Journal Title

      Journal of Biochemistry 136・2

      Pages: 211-220

    • NAID

      10016201529

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Purification and characterization of a soluble form of rat liver NADPH-cytochrome P450 reductase highly expressed in Escherichia coli.2003

    • Author(s)
      Shunsuke Hayashi
    • Journal Title

      Protein Expression and Purification 29

      Pages: 1-7

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Crystal structure of rat hemeoxygenase-1 in complex with biliverdin-iron chelate. Conformational change of the distal helix during the heme2003

    • Author(s)
      Masakazu Sugishima
    • Journal Title

      The Journal of Biological Chemistry 278

      Pages: 32352-32358

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Crystal structures of ferrous and CO-,CN^--, and NO-bound forms of rat hemamxygenase-1(HO-1) in complex with heme : Structural implications for2003

    • Author(s)
      Masakazu Sugishima
    • Journal Title

      Biochemistry 42

      Pages: 9898-9905

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Purification and characterization of a soluble form of rat liver NADPH-cytochrome P-450 reductase highly expressed in Escherichia coli.2003

    • Author(s)
      Shunsuke Hayashi, Yoshiaki Omata, Hiroshi Sakamoto, Takayuki Hara, Masato Noguchi
    • Journal Title

      Protein Fxpr.Purif. 29-1

      Pages: 1-7

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Crystal structure of rat heme oxygenase-1 in complex with biliverdin-iron chelate. Conformational change of the distal helix during the heme cleavage reaction.2003

    • Author(s)
      Masakazu Sugishima, Hiroshi Sakamoto, Yuichiro Higashimoto, Masato Noguchi, Keiichi Fukuyama
    • Journal Title

      J.Biol.Chem. 278-34

      Pages: 32352-3258

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Crystal structures of ferrous and CO-,CN^--, and NO-bound forms of rat heme oxygenase-1(HO-1)in complex with heme : Structural implications for discrimination between CO and O_2 in HO-1.2003

    • Author(s)
      Masakazu Sugishima, Hiroshi Sakamoto, Masato Noguchi, Keiichi Fukuyama
    • Journal Title

      Biochemistry 42-33

      Pages: 9898-9905

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Crystal structure of rat apo-hemeoxygenase-1(HO-1) : Mechanism of heme binding in HO-1 inferred from strutural comparison of the apo and heme2002

    • Author(s)
      Masakazu Sugishima
    • Journal Title

      Biochemistry 41

      Pages: 7293-7300

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] The ractivity of a-hydroxyhaemandverdohaem bound to haemoxygenase-1 to dioxygen and sodium dithionite.2002

    • Author(s)
      Hiroshi Sakamoto
    • Journal Title

      European Journal of Biochemistry 269

      Pages: 5231-5239

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Crystal structure of rat hteme oxygenase-1 in complex with heme bound to azide : Implication for regiospecific hydroxylation of heme at the2002

    • Author(s)
      Masakazu Sugishima
    • Journal Title

      The Journal of Biological Chemistry 277

      Pages: 45086-45090

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Crystal structure of rat apo-heme oxygenase-1(HO-1) : Mechanism of heme binding in HO-1 inferred from structural comparison of the apo and heme complex forms.2002

    • Author(s)
      Masakazu Sugishima, Hiroshi Sakamoto, Yoshimitau Kakuta, Yoshiaki Omata, Shunsuke Hayashi, Masato Noguchi, Keiichi Fukuyama
    • Journal Title

      Biochemistry 41-23

      Pages: 7293-7300

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] The reactivity of α-hydroxyhaem and verdohaem bound to haem oxygenase-1 to dioxygen and sodium dithionite.2002

    • Author(s)
      Hiroshi Sakamoto, Yoshiaki Omata, Shunsuke Hayashi, Saori Harada, Graham Palmer, Masato Noguchi
    • Journal Title

      Eur.J.Biochem. 269-21

      Pages: 5231-5239

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Crystal structure of rat heme oxygenase-1 in complex with heme bound to azide. Implication for regiospecific hydroxylation of heme at the alpha-meso carbon.2002

    • Author(s)
      Masakazu Sugishima, Hiroshi Sakamoto, Yuichiro Higashimoto, Yoshiaki Omata, Shunsuke Hayashi, Masato Noguchi, Keiichi Fukuyama
    • Journal Title

      J.Biol.Chem. 277-47

      Pages: 45086-45090

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Publications] Hiroshi Sakamoto: "The reactivity of a-hydroxyhaem and verdohaem bound to haemoxygenase-1 to dioxygen and sodium dithionite."Europian Journal of Biochemistry. 269. 5231-5239 (2002)

    • Related Report
      2003 Annual Research Report
  • [Publications] Masakazu Sugishima: "Crystal structure of rat heme oxygenase-1 in complex with heme bound to azide : Implication for regiospecific hydroxylation of heme at the α-meso carbon."The Journal of Biological Chemistry. 277. 45086-45090 (2002)

    • Related Report
      2003 Annual Research Report
  • [Publications] Shunsuke Hayashi: "Purification and characterization of a soluble form of rat liver NADPH-cytochrome P450 reductase highly expressed in Escherichia coli."Protein Expression and Purification. 29. 1-7 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Masakazu Sugishima: "Crystal structure of rat heme oxygenase-1 in complex with biliverdin-iron chelate."The Journal of Biological Chemistry. 278. 32352-32358 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Shunsuke Hayashi: "Characterization of rat heme oxygenase-3 gene. Implication of processed pseudogenes derived from heme oxygenase-2 gene."Gene. 発売予定.

    • Related Report
      2003 Annual Research Report
  • [Publications] Yoshiaki Omata: "Purification and characterization of human uroporphyrinogen III synthase expressed in Esehericia coli."The Journal of Biochemistry. 発売予定.

    • Related Report
      2003 Annual Research Report

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Published: 2002-04-01   Modified: 2016-04-21  

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