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Autophagy responsible for cellular self-degradation : molecular machinery and roles in development, differentiation, and diseases

Research Project

Project/Area Number 14580706
Research Category

Grant-in-Aid for Scientific Research (C)

Allocation TypeSingle-year Grants
Section一般
Research Field Cell biology
Research InstitutionNational Institute of Genetics

Principal Investigator

YOSHIMORI Tamotsu  National Institute of Genetics, Department of Cell Genetics, Professor, 細胞遺伝研究系, 教授 (60191649)

Project Period (FY) 2002 – 2003
Project Status Completed (Fiscal Year 2003)
Budget Amount *help
¥4,100,000 (Direct Cost: ¥4,100,000)
Fiscal Year 2003: ¥1,900,000 (Direct Cost: ¥1,900,000)
Fiscal Year 2002: ¥2,200,000 (Direct Cost: ¥2,200,000)
Keywordsprotein degradation / autophagy / Atg / coronavirus / LC3 / lysosomes / pathogenic bacteria / unfolded proteins / Atg5 / オートファゴソーム / セミインタクト細胞 / サイトゾル / 遺伝子破壊 / タンパク質凝集 / 代謝回転 / ハンチントン舞踏病
Research Abstract

To degrade their own components, cells possess autophagy that. delivers part of the cytosol and organelles into lysosomes. Autophagy contributes not only turnover of cellular constituents but also reconstruction of cells and tissue; it is induced circumstantially and degrades the intracellular structure at large-scale. Since abnormal induction of autophagy has been often observed in diverse diseases, pathological role of autophagy has the attention of investigators. In this project, we aimed for elucidation of molecular machinery of autophagy and its role in development, differentiation, and diseases.
Our results are as follows. 1) we identified mammalian Atg10 as a enzyme catalyzing covalent binding of Atg12 with Atg5, 2) we showed that fusion between autophagosomes and lysosomes requires transport from endosomes to autophagosomes, 3) we found a large 800kDa proteins complex including the Atg5-Atgl2 conjugate and identified a novel protein Atg16L as a component of the complex, 4) we obtained a evidence that lipidation of LC3 cause its localization to autophagosomes and demonstrated that two LC3 homologues, GABARAP and GATE16, could bind to autophagosomes like LC3, 5) we produced transgenic mouse expressing GFP-LC3 ubiquitously, which is useful to examine induction of autophagy during development and tissue differentiation,6) we found new function of autophagy ; autophagy prevents intracellular multiplication of both unfolded proteins causing degenerative diseases and pathogenic bacteria that have invaded host cells, 7) we discovered that mouse hepatitis virus related to coronavirus causing SARS utilizes autophagosomes to multiply inside host cells.

Report

(3 results)
  • 2003 Annual Research Report   Final Research Report Summary
  • 2002 Annual Research Report
  • Research Products

    (40 results)

All Other

All Publications (40 results)

  • [Publications] Mizushima N, Yoshimori T, Ohsumi Y.: "Mouse Apg10 as an Apg12 conjugating enzyme : Analysis, by the conjugation-mediated yeast two hybrid method."FEBS let. 532. 450-454 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Ikonomov OC, Sbrissa D, Yoshimori T, Cover TL, Shisheva A.: "PIKfyve kinase and SKD1 AAA ATPase define distinct endocytic compartments : only PIKfyve expression inhibits the cell-vacuolating activity of helicobacter pylori VacA toxin."J.Biol.Chem.. 277. 46785-46790 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Suzuki T, Nakagawa M, Yoshikawa A, Sasagawa N, Yoshimori T, 他: "The first molecular evidence that autophagy relates rimmed vacuole formation in chloroquine myopathy."J Biochem. 131. 647-651 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Nara A, Mizushima N, Yamamoto A, Kabeya Y Ohsumi Y, Yoshimori T.: "SKD1 AAA ATPase-dependent endosomal transport is involved in autolysosome formation"Cell Struct.Funct.. 27. 29-37 (2002)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Fujita H, Yamanaka M, Imamura K, Tanaka Y, Nara A, Yoshimori T, 他: "A dominant negative form of the AAA ATPase SKD1/VPS4 impairs membrane trafficking out of endosomal/lysosomal compartments : Class E vps phenotype."J.Cell Sci.. 116. 401-414 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Yamamoto A, Matsubae M, Takao T, Natsume T, Ohsumi Y, Yoshimori T, 他: "Mouse Apg16L, a Novel WD Repeat Protein, Targets to the Autophagic Isolation Membrane with the Apg12-Apg5 Conjugate"J.Cell Sci.. 116. 1679-1688 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Saeki K, Hong Z, Nakatsu M, Yoshimori T, Kabeya Y, Yamamoto 他: "Insulin-dependent signaling regulates azurophil granule-selective macroautophagy in human myeloblastic cells."J.Leukoc.Biol.. 74. 1108-1116 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Ohashi M, Mizushima N, Kabeya Y, Yoshimori T.: "Localization of Mammalian NAD(P)H Steroid Dehydrogenase-like Protein on Lipid Droplets."J.Biol.Chem.. 278. 36819-36829 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Katoh K, Shibata H, Suzuki H, Nara A, lshidoh K, Kominami E, Yoshimori 他: "The ALG-2-interacting protein Alix associates with CHMP4b, a human homologue of yeast Snf7 that is involved in multivesicular body sorting."J.Biol.Chem.. 278. 39104-39113 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Kanazawa C, Morita E, Yamada M, Ishii N, Miura S, Asao H, Yoshimori T, 他: "Effects of deficiencies of STAMs and Hrs, mammalian class E Vps proteins, on receptor downregulation"Biochem.Biophys.Res.Commun.. 309. 848-856 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Yamakami M, Yoshimori T, Yokosawa H.: "Tom 1, a VHS domain containing protein, interacts with Tollip, ubiquitin, and clathrin"J.Biol.Chem.. 278. 52865-52872 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Mizushima N, Yamamoto A, Matsui M, Yoshimori T, Ohsumi Y.: "In vivo analysis of autophagy in response to nutrient starvation using transgenic mice expressing a fluorescent autophagosome marker"Mol.Biol.Cell.. 15. 1101-1111 (2004)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Prentice E, Jerome WG, Yoshimori T, Mizushima N, Danison MR.: "Coronavirus Replication Complex Formation Utilizes Components of Cellular Autophagy"J.Biol.Chem.. 279. 10136-10141 (2004)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Kabeya Y, Mizushima N, Yamamoto A, Oshitani-Okamoto S, Ohsumi Y, Yoshimori T: "LC3, GABARAP and GATE16 localize to autophagosomal membrane depending on form-II formation."J.Cell.Sci.. (in press). (2004)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Yoshimori T, 他(共著): "Autophagy"Eurekah.com. 204-210 (2003)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Mizushima N, Yoshimori T, Ohsumi Y.: "Mouse Apg10 as an Apg12 conjugating enzyme Analysis by the conjugation-mediated yeast two-hybrid method."FEBS let.. 532. 450-454 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Ikonomov OC, Sbrissa D, Yoshimori T, Cover TL, Shisheva A.: "PIKfyve kinase and SKD 1 AAA ATPase define distinct endocytic compartments only PIKfyve expression inhibits the cell-vacuolating activity of helicobacter pylori VacA toxin."J.Biol.Chem. 277. 46785-46790 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Suzuki T, Nakagawa M, Yoshikawa A, Sasagawa N, Yoshimori T, Ohsumi Y, Nishino I, Ishiura S, Nonaka I.: "The first molecular evidence that autophagy relates rimmed vacuole formation in chloroquine myopathy."J Biochem.. 131. 647-651 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Nara A, Mizushima N, Yamamoto A, Kabeya Y, Ohsumi Y, Yoshimori T.: "SKD1 AAA ATPase-dep endent endosomal transport is involved in autolysosome formation"Cell Struct.Funct.. 27. 29-37 (2002)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Fujita H, Yamanaka M, Imamura K, Tanaka Y, Nara A, Yoshimori T, Yokota S, Himeno M: "A dominant negative form of the AAA ATPase SIiD1/VPS4 impairs membrane trafficking out of endosomal/lysosomal compartments Class E vps phenotype. Mizushima N, Kuma A, Kobayashi Y."J.Cell Sci.. 116. 401-414 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Yamamoto A, Matsubae M, Takao T, Natsume T, Ohsumi Y, Yoshimori T.: "Mouse Apg16L, a Novel WD Repeat Protein, Targets to the Autophagic Isolation Membrane with the Apg12-Apg5 Conjugate."J.Cell Sci.. 116. 1679-1688 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Saeki K, Hong Z, Nakatsu M, Yoshimori T, Kabeya Y, Yamamoto A, Kaburagi Y, You A.: "Insulin-dependent signaling regulates azurophil granule-selective macroautophagy in human myeloblastic cells."J.Leukoc.Biol.. 74. 1108-1116 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Ohashi M, Mizushima N, Kabeya Y, Yoshimori T.: "Localization of Mammalian NAD(P)H Steroid Dehydrogenase-like Protein on Lipid Droplets."J.Blol.Chem.. 278. 36819-36829 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Katoh K, Shibata H, Suzuki H, Nara A, Ishidoh K, Kominami E, Yoshimori T, Maki M.: "The ALGG-2-interacting protein Alix associates with CHMP4b, a human homologue of yeast Snf7 that is involved in multivesicular body sorting."J.Biol.Chem. 278. 39104-39113 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Kanazawa C, Morita E, Yamada M, Ishii N, Miura S, Asao H, Yoshimori T, Sugamura K.: "Effects of deficiencies of STAMs and Hrs, mammalian class E Vps proteins, on receptor downregulation"Biochem.Biophys.Res.Commun.. 309. 848-856 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Yamakami M, Yoshimori T, Yokosawa H.: "Tom 1, a VHS domain containing protein, interacts with Tollip, ubiquitin, and clathrin"J.Biol.Chem.. 278. 52865-52872 (2003)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Mizushima N, Yamamoto A, Matsui M, Yoshimori T, Ohsumi Y.: "In vivo analysis of autophagy in response to nutrient starvation using transgenic mice expressing a fluorescent autophagosome marker"Mol.Biol.Cell.. 15. 1101-1111 (2004)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Prentice E, Jerome W G, Yoshimori T, Mizushima N, Denison M R.: "Coronavirus Replication Complex Formation Utilizes Components of Cellular Autophagy"J.Biol.Chem.. 279. 10136-10141 (2004)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Kabeya Y, Mizushima N, Yamamoto A, Oshitani-Okamoto S, Ohsumi Y, Yoshimori T: "LC3, GABARAP and GATE16 localize to autophagosomal membrane depending on form-II formation."J.Cell.Sci.. (in press). (2004)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2003 Final Research Report Summary
  • [Publications] Saeki K, Hong Z, Nakatsu M, Yoshimori T, Kabeya Y他: "Insulin-dependent signaling regulates azurophil granule-selective macroautophagy in human myeloblastic cells."J.Leukoc.Biol.. 74. 1108-1116 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Ohashi M, Mizushima N, Kabeya Y, Yoshimori T.: "Localization of Mammalian NAD(P)H Steroid Dehydrogenase-like Protein on Lipid Droplets."J.Biol.Chem.. 278. 36819-36829 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Katoh K, Shibata H, Suzuki H, Nara A, Ishidoh K, Kominami E, Yoshimori T他: "The ALG-2-interacting protein Alix associates with CHMP4b, a human homologue of yeast Snf7 that is involved in multivesicular body sorting."J.Biol.Chem.. 278. 39104-39113 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Kanazawa C, Morita E, Yamada M, Ishii N, Miura S, Asao H, Yoshimori T他: "Effects of deficiencies of STAMs and Hrs, mammalian class E Vps proteins, on receptor downregulation"Biochem.Biophys.Res.Commun.. 309. 848-856 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Yamakami M, Yoshimori T, Yokosawa H.: "Tom 1, a VHS domain-containing protein, interacts with Tollip, ubiquitin, and clathrin"J.Biol.Chem.. 278. 52865-52872 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Mizushima N, Yamamoto A, Matsui M, Yoshimori T, Ohsumi Y.他: "In vivo analysis of autophagy in response to nutrient starvation using transgenic mice expressing a fluorescent autophagosome marker"Mol.Biol.Cell. 15. 1101-1111 (2004)

    • Related Report
      2003 Annual Research Report
  • [Publications] Yoshimori T, 他(共著): "Autophagy"Eurekah.com. 204-210 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Nara A, 他: "SKD1 AAA ATPase-dependent endosomal transport is involved in autolysosome formation"Cell Struct. Funct.. 27. 29-37 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Suzuki T 他: "The first molecular evidence that autophagy relates rimmed vacuole ormation in chloroquine myopathy"J Biochem. 131. 647-651 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Mizushima N: "Mouse Apg10 as an Apg12 conjugating enzyme : Analysis by the conjugation-mediated yeast two-hybrid method"FEBS let. 532. 450-454 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Mizushima N: "Mouse Apg16L, a Novel WD Repeat Protein, Targets to the Autophagic Isolation Membrane with the Apg12-Apg5 Conjugate"J. Cell Sci. (印刷中). (2003)

    • Related Report
      2002 Annual Research Report

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Published: 2002-04-01   Modified: 2016-04-21  

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