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Physiology and pathology of the ubiquitin-mediated quality control system

Research Project

Project/Area Number 14GS0322
Research Category

Grant-in-Aid for Creative Scientific Research

Allocation TypeSingle-year Grants
Research InstitutionOsaka City University

Principal Investigator

IWAI Kazuhiro  Osaka City University, Graduate School of Medicine, Professor (60252459)

Co-Investigator(Kenkyū-buntansha) MORI Hiroshi  Osaka City University, Graduate School of Medicine, Professor (10159189)
Project Period (FY) 2002 – 2006
Project Status Completed (Fiscal Year 2006)
Budget Amount *help
¥345,150,000 (Direct Cost: ¥265,500,000、Indirect Cost: ¥79,650,000)
Fiscal Year 2006: ¥90,480,000 (Direct Cost: ¥69,600,000、Indirect Cost: ¥20,880,000)
Fiscal Year 2005: ¥84,890,000 (Direct Cost: ¥65,300,000、Indirect Cost: ¥19,590,000)
Fiscal Year 2004: ¥84,890,000 (Direct Cost: ¥65,300,000、Indirect Cost: ¥19,590,000)
Fiscal Year 2003: ¥84,890,000 (Direct Cost: ¥65,300,000、Indirect Cost: ¥19,590,000)
Keywordsprotein / biological molecules / stress / cancer / neurodegenerative diseases
Research Abstract

1. Functional analyses of the HOIL-1 ubiquitin ligase
a. Mechanism of target recognition by HOIL-1 A heme-regulatory motif (HRM) in IRP2 is the heme-binding site of IRP2. Oxidative modification of IRP2, generated by heme bound to the HRM and oxygen is recognized by HOIL-1, which leads to IRP2 ubiquitination. From these analyses, we show a novel iron-sensing mechanism, in which cells are sensing changes in iron concentration through heme (Nature Cell Biology, 2003; Molecular Cell, 2005).
b. Function of the ligase complex containing HOIL-1 The LUBAC ubiquitin ligase complex, composed of HOIP and HOIL-1L, an isoform of HOIL-1, generates a novel polyubiquitin chain, in which C-terminal Gly residue of ubiquitin is conjugated to a-amino group of N-terminal Met of ubiquitin (EMBO J. 2006).
c. Physiological roles of the HOIL-1 ligase We have shown that LUBAC selectively activates the NF-kB pathway through linear ubiquitination of NEMO (In submission).
2. We showed that the SCF^<Fbs1> ligase selectively recognizes the chitobiose portion of the N-linked sugar chain, which recognition mechanism is suitable for selective recognition of denatured glycoproteins (Nature, 2002; Nat. Strut. Mol. Biol., 2004).
3. We have generated transgenic mice expressing IRP2 in neuron (IRP2 Tg) and analyzed the roles of oxidative stress generated by perturbation of iron metabolism in neurodegenerative disorders. Although massive iron accumulation was not observed, reactive Fe 2+ was accumulated in IRP2 Tg neurons, which provokes oxidative damages in those cells. Also, neuronal loss and ataxia was observed in aged IRP2 Tg mice (In submission).

Report

(6 results)
  • 2006 Annual Research Report   Final Research Report Summary
  • 2005 Annual Research Report
  • 2004 Annual Research Report
  • 2003 Annual Research Report
  • 2002 Annual Research Report
  • Research Products

    (46 results)

All 2007 2006 2005 2004 2003 2002 Other

All Journal Article (32 results) Book (2 results) Publications (12 results)

  • [Journal Article] Direct interactions between Nedd8 and ubiquitin E2 conjugating enzymes contibute to up-regulation of cullin-based E3 ligase activity.2007

    • Author(s)
      Sakata, E., Yamaguchi, Y., Miyauchi, Y., Iwai, K.Chiba, T., Sacki, Y., Matsuda, N., Tanaka, K., Kato, K.
    • Journal Title

      Nat.Struct.Mol.Biol. 14・2

      Pages: 167-168

    • Related Report
      2006 Annual Research Report
  • [Journal Article] A neural-specific F-box protein Fbs1 functions as a chaperone suppressing glycoprotein aggregation.2007

    • Author(s)
      Yoshida, Y., Murakami, A., Iwai, K., Tanaka, K.
    • Journal Title

      J.Biol.Chem. 282・10

      Pages: 7137-7144

    • Related Report
      2006 Annual Research Report
  • [Journal Article] A ubiquitin ligase complex assembles linear polyubiquitin chains2006

    • Author(s)
      Kirisako, T., Katnei, K., Murata, S., Kato, M., Fukumoto., H, , Kanie, K., Sano, S.Tokunaga, F., Tanaka, K.and Iwai, K.
    • Journal Title

      EMBO J. 25・20

      Pages: 4877-4887

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Mutual regulation of conventional protein kinase C and a ubiquitin liease complex(LUBAC)2006

    • Author(s)
      Nakamura, M., Tokunaga, F., Sakata, S.-I.and Iwai, K.
    • Journal Title

      Biochem.Biophys.Res.Commun. 351・2

      Pages: 340-347

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Studies of the ubiquitin proteasome system2006

    • Author(s)
      Lorick, K., Yang, Y., Jensen, J., Iwai, K.and Weissman, A.M.
    • Journal Title

      Units 15.9 Sections 1-12.Current Protocols in Cell Biology, Bonifacino J, Dasso M, Lippincott-Schwartz J, Harford J, Yamada K, eds.John Wiley and Sons

      Pages: 75-75

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] A ubiquitin ligase complex assembles linear polyubiquitin chains.2006

    • Author(s)
      Kirisako, T., Kamei, K., Murata, S., Kato, M., Fukumoto, H., Kanie, K., Sano, S. Tokunaga, F., Tanaka, K., Iwai, K.
    • Journal Title

      EMBO J. 25

      Pages: 4877-4887

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Mutual regulation of conventional protein kinase C and a ubiquitin ligase complex(LUBAC).2006

    • Author(s)
      Nakamura, M., Tokunaga, F., Sokoto, S.-I. and Iwai, K.
    • Journal Title

      Biochem. Biophys. Res. Commun. 351

      Pages: 340-347

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Studies of the ubiquitin proteasome system. Units 15.9 Sections 1-12.2006

    • Author(s)
      Lorick, K., Yang, Y., Jensen, J., Iwai, K., Weissman, A. M.
    • Journal Title

      Current Protocols in Cell Biology Bonifacino J, Dasso M, Lippincott-Schwartz J, Harford J, Yamada K, eds. John Wiley and Sons 75

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] A ubiquitin ligase complex assembles linear polyubiquitin chains.2006

    • Author(s)
      Kirisako, T., Kamei, K., Murata, S., Kato, M., Fukumoto, H., Kanie, K., Sano, S., Tokunaga, F., Tanaka, K., Iwai, K.
    • Journal Title

      EMBO J. 25・20

      Pages: 4877-4887

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Mutual regulation of conventional protein kinase C and a ubiquitin ligase complex(LUBAC).2006

    • Author(s)
      Nakamura, M., Tokunaga, F., Sakata, S.-I., Iwai, K.
    • Journal Title

      Biochem.Biophys.Res.Commun. 351・2

      Pages: 340-347

    • Related Report
      2006 Annual Research Report
  • [Journal Article] The E3 ubiquitin ligase HOIL-1 induces the polyubiquitination and degradation of SOCS6 associated proteins.2006

    • Author(s)
      Bayle, J., Lopez, S., Iwai, K., Dubreuil, P., De Sepulveda, P.
    • Journal Title

      FEBS Lett. 580・11

      Pages: 2609-2614

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Chemoenzymatic Ubiquitination of Artificial Substrates.2006

    • Author(s)
      Barchak, O.N., Jaquinod, M., Cottin, C., Mugherli, L., Iwai, K., Chatelain, F., Balakirev, M.Y.
    • Journal Title

      Chembiochem. 7・11

      Pages: 1667-1669

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Ubiquitination of APOBEC3 proteins by the Vif-Cullin5-ElonginB-ElonginC complex.2006

    • Author(s)
      Shirakawa, K., et al.
    • Journal Title

      Virology 344

      Pages: 263-266

    • Related Report
      2005 Annual Research Report
  • [Journal Article] The E3 ubiquitin ligase HOIL-1 induces the polyubiquitination and degradation of SOCS6 associated proteins.2006

    • Author(s)
      Bayle, J., et al.
    • Journal Title

      FEBS Letters (in press)

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Involvement of heme regulatory motif in heme-mediated ubiquitination and degradation of IRP22005

    • Author(s)
      Ishikawa, H., Kato, M., Hori, H., Ishmori, K., Kirisako, T., Tokunaga, F.and Iwai, K.
    • Journal Title

      Molecular Cell 19

      Pages: 171-181

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Invovlement of heme regulatory motif in heme-mediated ubiquitination and degradation of IRP2.2005

    • Author(s)
      Ishikawa, H., Kato, M., Hori, H., Ishimori, K., Kirisako, T., Tokunaga, F., Iwai, K.
    • Journal Title

      Molecular Cell. 19

      Pages: 171-181

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Ubiquitination of APOBEC3G by an HIV-1 Vif-cullin5-elonginB-elonginC complex is essential for Vif function.2005

    • Author(s)
      Kobayashi, M., et al.
    • Journal Title

      J. Biol. Chem 280

      Pages: 18573-18578

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Multiple roles of Rbx1 in the VBC-Cul2 ubiquitin ligase complex.2005

    • Author(s)
      Megumi, Y., et al.
    • Journal Title

      Genes to Cells 10

      Pages: 679-691

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Involvement of heme regulatory motif in heme-mediated ubiquitination and degradation of IRP2.2005

    • Author(s)
      Ishikawa, H., et al.
    • Journal Title

      Molecular Cell 19

      Pages: 171-181

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Identification, expression, and assay of an oxidation-specific ubiquitin ligase, HOIL-1.2005

    • Author(s)
      Iwai, K., et al.
    • Journal Title

      Methods Enzymol 398

      Pages: 256-271

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Glycoprotein-specific ubiquitin ligases recognize N-glycans in unfolded substrates.2005

    • Author(s)
      Yoshida, Y., et al.
    • Journal Title

      EMBO Rep (In press)

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Structural basis of sugar-recognizing ubiquitin ligase2004

    • Author(s)
      Mizushima, T., Hirao, T., Yoshida, Y., Lee, S.J., Chiba, T., Iwai, K., Yamaguchi, Y., Kato, K, Tsukihara, T.and Tallaka, K.
    • Journal Title

      Nature Structural & Molecular Biology 11

      Pages: 365-370

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Structural basis of sugar-recognizing ubiquitin ligase.2004

    • Author(s)
      Mizushima, T., Hiro, T., Yoshida, Y., Lee, S. J., Chiba, T., Iwai, K., Yamaguchi, Y., Kato, K., Tsukihara, T., Tanaka, K.
    • Journal Title

      Nature Structural & Molecular Biology 11

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Genetic ablations of iron regulatory proteins 1 and 2 reveal why iron regulatory protein 2 dominates iron homeostasis.2004

    • Author(s)
      Meyron-Holtz, E., G. et al.
    • Journal Title

      EMBO J. 23

      Pages: 386-395

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Structural basis of sugar-recognizing ubiquitin ligase.2004

    • Author(s)
      Mizushima, T. et al.
    • Journal Title

      Nat.Struct.Mol.Biol. 11

      Pages: 365-370

    • Related Report
      2004 Annual Research Report
  • [Journal Article] The Ubiquitin System : From Basic Mechanisms to the Patient Bed.2004

    • Author(s)
      Ciechanover, A et al.
    • Journal Title

      IUBMB Life 56

      Pages: 193-201

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Association of HPV infection with prognosis after neoadjuvant chemotherapy in advanced uterine cervical cancer.2004

    • Author(s)
      Nobeyama, H. et al.
    • Journal Title

      Int.J.Mol.Med. 14

      Pages: 101-105

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Structural basis for distinct roles of Lys63- and Lys48-linked polyubiquitin chains.2004

    • Author(s)
      Tenno, T. et al.
    • Journal Title

      Genes Cells. 9

      Pages: 865-875

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Identification of the ubiquitin-protein ligase that recognizes oxidized IRP22003

    • Author(s)
      Yamanaka, K., Ishikawa, H., Megmni, Y., Tokunaga, F., Kanie, M., Rouault, T.A., Morishima L, Minato, N., Ishimori, K., Iwai, K.
    • Journal Title

      Nature Cell Biology 5

      Pages: 336-340

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Identification of the ubiquitin-protein ligase that recognizes oxidized IRP22003

    • Author(s)
      Yamanaka, K., Ishikawa, H., Megumi, Y., Tokunaga, F., Kanie, M., Rouault, T. A., Morishima, I., Minato, N., Ishimori, K., Iwai K.
    • Journal Title

      Nature Cell Biology 5

      Pages: 336-340

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] E3 ubiquitin-ligase that recognises sugar chains2002

    • Author(s)
      Yosbida, Y., Chiba, T., Tokunaga, F., Kawasaki, H., Iwai K, Suzuki, T., Ito, Y., Matsuoka, K., Yoshida, M., Tanaka, K.and Tai, T.
    • Journal Title

      Nature 418

      Pages: 438-442

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] E3 ubiquitin-ligase that recognises sugar chains2002

    • Author(s)
      Yoshida, Y., Chiba, T., Tokunaga, F., Kawasaki, H., Iwai K., Suzuki, T., Ito, Y., Matsuoka, K., Yoshida, M., Tanaka, K., Tai, T.
    • Journal Title

      Nature. 418

      Pages: 438-442

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Book] Studies of the ubiquitin proteasome system. Units 15.9 Sections 1-12. Current Protocols in Cell Biology2006

    • Author(s)
      Lorick, K., Yang, Y., Jensen, J., Iwai, K.and Weissman, A.M.
    • Total Pages
      75
    • Publisher
      Bonifacino J, Dasso M, Lippincott-Schwartz J, Harford J, Yamada K, eds. John Wiley and Sons;
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Book] Studies of the ubiquitin proteasome system. Units 15.9 Sections I-12. Current Protocols in Cell Biology2006

    • Author(s)
      Lorick, K., Yang, Y., Jensen, J., Iwai, K., Weissman, A.M.
    • Total Pages
      75
    • Publisher
      Bonifacino J. Dasso M, Lippincott-Schwartz J, Harford J, Yamada K, Bonafacino J, (eds. John Wiley and Sons;)
    • Related Report
      2006 Annual Research Report
  • [Publications] Yamanaka, K., et al.: "Identification of the ubiquitin-protein ligase that recognizes oxidized IRP2"Nature Cell Biology. 5. 336-340 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Ishida, D., et al.: "Myeloproliferative stem cell disorders by deregulated Rap1 activation in SPA-1-deficient mice."Cancer Cell. 4. 55-65 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Iwai K: "An ubiquitin ligase recognizing a protein oxidized by iron : implications for the turnover of oxidatively damaged proteins"J.Biochem.. 134. 175-182 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Yoshida, Y., et al.: "Fbs2 is a new member of the E3 ubiquitin ligase family that recognizes sugar chains."J Biol Chem.. 278. 43877-43884 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Meyron-Holtz EG, et al.: "Genetic ablations of iron regulatory proteins 1 and 2 reveal why iron regulatory protein 2 dominates iron homeostasis"EMBO J.. 23. 386-395 (2004)

    • Related Report
      2003 Annual Research Report
  • [Publications] Mizushima, T et al.: "Structural basis of sugar-recognizing ubiquitin ligase"Nature Structural & Molecular Biology. (In press). (2004)

    • Related Report
      2003 Annual Research Report
  • [Publications] Yamanaka, K. et al.: "Identification of the ubiquitin-protein ligase that recognizes oxidized IRP2. In cress"Nature Cell Biology. (In press). (2003)

    • Related Report
      2002 Annual Research Report
  • [Publications] Ashizuka, M., et al.: "A novel translational control through Iron-Responsive Element by interaction of multifunctional protein YB-1 and IRP2"Molecular Cell Biology. 22. 6375-6383 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Yoshida, Y. et al.: "E3 ubiquitin-ligase that recognises sugar chains"Nature. 418. 438-442 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Amir, R.E.et al.: "The NEDD8 pathway is essential for SCF-beta-TrCP -mediated ubiquitination and processing of the NF-kB precursor p105"Journal of Biological Chemistry. 277. 23253-23259 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] Sasaki, A. et al.: "A RING finger protein Prajal regulates Dlx5-dependent transcription through its ubiquitin ligase activity for the Dlx/Msx-interacting MAGE/Necdin family protein, Dlxin-1"Journal of Biological Chemistry. 277. 22541-22546 (2002)

    • Related Report
      2002 Annual Research Report
  • [Publications] 岩井 一宏, 恵 謙: "pVHLユビキチンリガーゼとその基質認識メカニズム"医療ジャーナル 臨時増刊号 Medical Front Lineユビキチン代謝系の破綻と疾病-癌・免疫病から神経病まで-. 38. 34-39 (2002)

    • Related Report
      2002 Annual Research Report

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Published: 2003-04-01   Modified: 2016-04-21  

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