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Functional Genomics by comprehensive RNAi mutant fly bank in Drosophila

Research Project

Project/Area Number 15011253
Research Category

Grant-in-Aid for Scientific Research on Priority Areas

Allocation TypeSingle-year Grants
Review Section Biological Sciences
Research InstitutionNational Institute of Genetics

Principal Investigator

UEDA Ryu  National Institute of Genetics, Genetic Strains Research Center, Professor, 系統生物研究センター, 教授 (40353429)

Co-Investigator(Kenkyū-buntansha) SAIGO Kaoru  University of Tokyo, Graduate School of Science, Professor, 大学院理学系研究科, 教授 (50136454)
高橋 邦明  国立遺伝学研究所, 系統生物研究センター, 助手 (80370112)
Project Period (FY) 2003 – 2004
Project Status Completed (Fiscal Year 2004)
Budget Amount *help
¥32,000,000 (Direct Cost: ¥32,000,000)
Fiscal Year 2004: ¥16,000,000 (Direct Cost: ¥16,000,000)
Fiscal Year 2003: ¥16,000,000 (Direct Cost: ¥16,000,000)
KeywordsDrosophila / RNAi / mutant fly bank / gene function analysis / functional genomics / 遺伝学 / ゲノム / 昆虫 / 発生・分化 / ショウジョウバエ / ゲノム機能
Research Abstract

In this project, we developed the 'inducible RNAi system and applied it to 14,000 protein-coding genes in Drosophila. To date, IR vectors corresponding 8,300 genes have been constructed and over 12.000 transformed fly lines have been established. To check the efficacy of these RNAi flies and to apply them to investigate new functions of the genes, collaborative researches have been carried out with fly researchers in the world. These collaborations include many subjects of life sciences, such as, cell growth, apoptosis, morphogenesis of cells and tissues, innate immunity, heart/trachea/alimentary canal development, neurogenesis, memory/learning, circadian rhythm, polyglutamin disease, Alzheimer disease, and glycobiology et etc. The publications through these collaborations are up to 20, which are listed below.
The specific characters of these RNAi mutant flies have also become clear through the collaborations. In the embryonic stages, nock-down of gene expression by inducible RNAi seemed sometimes weaker than that at other developmental stages, probably because of the huge amount of the maternal gene product. Also in some neural tissues, the phenotype of the RNAi was weaker than that obtained by mosaic analysis using null mutation. However, in almost cases, the RNAi flies could knock-down the target gene specifically, reproduce a typical phenotype of the known gene, and reveal a new phenotype of the gene, whose function is not known. The fact that the screening of many genes for an anticipated phenotype proved to be very easy implies the usefulness of these RNAi mutant fly bank in many applications of gene function analyses. The RNAi flies produced in this project will be opened to the fly community till the end of this summer from the stock center in the National Institute of Genetics.

Report

(3 results)
  • 2004 Annual Research Report   Final Research Report Summary
  • 2003 Annual Research Report
  • Research Products

    (50 results)

All 2005 2004 2003 2002 Other

All Journal Article (46 results) Publications (4 results)

  • [Journal Article] The transmembrane protein, Tincar, is involved in the development of the compound eye in Drosophila melanogaster.2005

    • Author(s)
      Hirota, Y.
    • Journal Title

      Dev. Genes Evol. 215

      Pages: 90-96

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Wing-to-leg homeosis by Spineless causes an apoptosis regulated by Fish-lips, a novel Leucine-Rich Repeats transmembrane protein.2005

    • Author(s)
      Adachi-Yamada, T.
    • Journal Title

      Mol. Cell. Biol. 25

      Pages: 3140-3150

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Inhibitor of apoptosis 2 and TAK1-binding protein are components of the Drosophila Imd pathway2005

    • Author(s)
      Kleino, A.
    • Journal Title

      The EMBO J. 24

      Pages: 3423-3434

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] G-protein gamma subunit l is required for sugar reception in Drosophila2005

    • Author(s)
      Ishimoto, H.
    • Journal Title

      The EMBO J. 24

      Pages: 2159-3265

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] The transmembrane protein, Tincar, is involved in the development of the compound eye in Drosophila melanogaster.2005

    • Author(s)
      Hirota, Y., Sawamoto, K., Takahashi, K., Ueda, R., Okano, H.
    • Journal Title

      Dev. Genes Evol. 215

      Pages: 90-96

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Wing-to-leg homeosis by Spineless causes an apoptosis regulated by Fish-lips, a novel Leucine-Rich Repeats transmembrane protein.2005

    • Author(s)
      Adachi-Yamada, T., Harumoto, T., Sakurai, K., Ueda, R., Saigo, K., 0'Connor, M.B., Nakato, H.
    • Journal Title

      Mol. Cell. Biol. 25

      Pages: 3140-3150

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Inhibitor of apoptosis 2 and TAK1-binding protein are components of the Drosophila Imd pathway2005

    • Author(s)
      Kleino, A., Valanne, S., Ulvila, J., Kallio, J., Myllymaki, H., Enwald, H., Stoven, S., Poidevin, M., Ueda, R., Hultmark, D., Lemaitre, B., Ramet, M.
    • Journal Title

      The EMBO J. 25

      Pages: 3423-3434

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] G-protein gamma subunit 1 is required for sugar reception in Drosophila2005

    • Author(s)
      Ishimoto, H., Takahashi, K., Ueda, R., Tanimura, T.
    • Journal Title

      The EMBO J. 24

      Pages: 3259-3265

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] The transmembrane protein, Tincar, is involved in the development of the compound eye in Drosophila melanogaster.2005

    • Author(s)
      Hirota, Y., et al.
    • Journal Title

      Dev.Genes Evol. 215

      Pages: 90-96

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Wing-to-leg homeosis by Spineless causes an apoptosis regulated by Fish-lips, a novel Leucine-Rich Repeats transmembrane protein.2005

    • Author(s)
      Adachi-Yamada, T., et al.
    • Journal Title

      Mol.Cell.Biol. (印刷中)

    • Related Report
      2004 Annual Research Report
  • [Journal Article] PVR plays a critical role via JNK activation in thorax closure during Drosophila meta morphosis.2004

    • Author(s)
      Ishimaru, S.
    • Journal Title

      The EMBO J. 23

      Pages: 3984-3994

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Guidelines for the selection of highly effective siRNA sequences for mammalian and chick RNA interference.2004

    • Author(s)
      Ui-Tei, K.
    • Journal Title

      Nucleic Acids Res. 32

      Pages: 936-948

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] A Drosophila salivary gland mucin is also expressed in immune tissues : evidence for function in coagulation and the entrapment of bacteria.2004

    • Author(s)
      Ui-Tei, K.
    • Journal Title

      Insect Biochem Mol Biol. 34, 12

      Pages: 1297-1304

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] RNA interference induced by transient or stable expression of hairpin structures of double stranded RNA in Drosophila and mammalian cells.2004

    • Author(s)
      Ui-Tei, K.
    • Journal Title

      Molekulyarnaya biologiya 38, 2

      Pages: 228-238

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Regulation of Notch signaling by Drosophila heparan sulfate 3-O sulfotransferase.2004

    • Author(s)
      Kamimura, K.
    • Journal Title

      J. Cell Biol. 166

      Pages: 1069-1079

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] In vivo RNA interference analysis reveals an unexpected role for GNBP1 in the defense against Gram-positive bacterial infection in Drosophila adults.2004

    • Author(s)
      Pili-Floury, S.
    • Journal Title

      J. Biol. Chem. 279

      Pages: 12848-12853

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] The twisted-abdomen phenotype of Drosophila POMT1 and POMT2 mutants coincides with their heterophilic protein O-mannosyltransferase activity.2004

    • Author(s)
      Ichimiya, T.
    • Journal Title

      J. Biol. Chem. 279

      Pages: 42638-42647

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Drosophila glucosylceramide synthase : a negative regulator of cell death mediated by poapoptotic factors.2004

    • Author(s)
      Koganeya, A. K.
    • Journal Title

      J. Biol. Chem. 279

      Pages: 35995-36002

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Guidelines for the selection of highly effective siRNA sequences for mammalian and chick RNA interference.2004

    • Author(s)
      Ui-Tei, K., Naito, Y., Takahashi, F., Haraguchi, T., Ohki-Hamazaki, H., Juni, A., Ueda, R., Saigo, K.
    • Journal Title

      Nucleic Acids Res. 32

      Pages: 936-948

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] A Drosophila salivary gland mucin is also expressed in immune tissues : evidence for a function in coagulation and the entrapment of bacteria.2004

    • Author(s)
      Korayem, A.M., Fabbri, M., Takahashi, K., Scherfer, C., Lindgren, M., Schmidt, O., Ueda, R., Dushay, M.S., Theopold, U.
    • Journal Title

      Insect Biochem Mol Biol. 34

      Pages: 1297-1304

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] RNA interference induced by transient or stable expression of hairpin structures of double stranded RNA in Drosophila and mammalian cells.2004

    • Author(s)
      Ui-Tei, K., Ueda, R., Zenno, S., Takahashi, F., Doi, N., Naito, Y., Yamamoto, M., Hashimoto, N., Takahashi, K., Hamada, T., Tokunaga, T., Saigo, K.
    • Journal Title

      Molekulyarnaya biologiya 38

      Pages: 228-238

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Regulation of Notch signaling by Drosophila heparan sulfate 3-O sulfotransferase.2004

    • Author(s)
      Kamimura, K., Rhodes, J.M., Ueda, R., McNeely, M., Shukla, D., Kimata, K., Spear, P.G., Shworak, N.W., Nakato, H.
    • Journal Title

      J. Cell Biol. 166

      Pages: 1069-1079

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] In vivo RNA interference analysis reveals an unexpected role for GNBP1 in the defence against Gram-positive bacterial infection in Drosophila adults.2004

    • Author(s)
      Pili-Floury, S., Leulier, F., Takahashi, K., Saigo, K., Samain, E., Ueda, R., Lemaitre, B.
    • Journal Title

      J. Cell Biol. 166

      Pages: 12848-12853

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] The twisted-abdomen phenotype of Drosophila POMT1 and POMT2 mutants coincides with their heterophilic protein O-mannosyltransferase activity.2004

    • Author(s)
      Ichimiya, T., Manya, H., Ohmae, Y, Yoshida, H., Takahashi, K., Ueda, R., Endo, T., Nishihara, S.
    • Journal Title

      J. Cell Biol. 166

      Pages: 42638-42647

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Drosophila glucosylceramide synthase : a negative regulator of cell death mediated by proapoptotic factors.2004

    • Author(s)
      Koganeya, A.K., Sasamura, T., Oshima, E., Suzuki, E., Nishihara, S., Ueda, R., Hirabayashi, Y
    • Journal Title

      J. Cell Biol. 166

      Pages: 35995-36002

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] The twisted-abdomen phenotype of Drosophila POMT1 and POMT2 mutants coincides with their heterophilic protein O-mannosyltransferase activity.2004

    • Author(s)
      Ichimiya, T., et al.
    • Journal Title

      J.Biol.Chem. 279

      Pages: 42638-42647

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Regulation of Notch signaling by Drosophila heparan sulfate 3-O sulfotransferase.2004

    • Author(s)
      Kamimura, K., et al.
    • Journal Title

      J.Cell Biol. 166

      Pages: 1069-1070

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Drosophila glucosylceramide synthase : A negative regulator of cell death mediated by proapoptotic factors.2004

    • Author(s)
      Koganeya, A.K., et al.
    • Journal Title

      J.Biol.Chem., et al. 279

      Pages: 35995-36002

    • Related Report
      2004 Annual Research Report
  • [Journal Article] PVR plays a critical role via JNK activation in thorax closure during Drosophila metamorphosis.2004

    • Author(s)
      Ishimaru, S., et al.
    • Journal Title

      EMBO J. 23

      Pages: 3984-3994

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Requirement of Dicer and eIF2C translation initiation factors for short-interfering-RNA-mediated gene silencing in mammalian cells.2003

    • Author(s)
      Doi, N.
    • Journal Title

      Curr. Biol. 13

      Pages: 41-46

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Proteoglycan UDP-galactose : beta-xylose betal,4galactosyltransferase I is essential for viability in Drosophila melanogaster.2003

    • Author(s)
      Takemae, H.
    • Journal Title

      J. Biol. Chem. 278

      Pages: 15571-15578

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Molecular cloning and identification of 3'- phosphoadenosine 5'-phosphosulfate transporter.2003

    • Author(s)
      Kamiyama, S.
    • Journal Title

      J. Biol. Chem. 278

      Pages: 25958-25963

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Proteoglycan UDP-galactose : beta-xylose beta1,4galactosyltransferase I is essential for viability in Drosophila melanogaster.2003

    • Author(s)
      Takemae, H., Ueda, R., Ohkubo, R., Nakato, H., Izumi, S., Saigo, K., Nishihara, S.
    • Journal Title

      J. Biol. Chem. 278

      Pages: 15571-15578

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Molecular cloning and identification of 3'-phosphoadenosine 5'-phosphosulfate transporter.2003

    • Author(s)
      Kamiyama, S., Suda, T., Ueda, R., Suzuki, M., Okubo, R., Kikuchi, N., Chiba, Y, Goto, S., Toyoda, T., Saigo, K., Watanabe, M., Narimatsu, H., Jigami, Y, Nishihara, S.
    • Journal Title

      J. Biol. Chem. 278

      Pages: 25958-25963

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] PVR plays a critical role via JNK activation in thorax closure during Drosophila metamorphosis.2003

    • Author(s)
      Ishimaru, S., Ueda, R., Hinohara, Y, Ohtani, M., Hanafusa, H.
    • Journal Title

      The EMBO J. 23

      Pages: 3984-3994

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Inducible expression of double strand RNA reveals a role of dFADD in the regulation of antibacterial response in Drosophila.2002

    • Author(s)
      Leulier, F.
    • Journal Title

      Curr. Biol. 12

      Pages: 996-1000

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] GETDB, a database compiling expression patterns and molecular locations of a collection of Ga14 enhancer traps.2002

    • Author(s)
      Hayashi, S.
    • Journal Title

      Genesis 34

      Pages: 58-61

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Requirements of high levels of Hedgehog signaling activity for medial-region cell fate determination in Drosophila leg : identification of pxb, a putative Hedgehog signaling attenuator gene repressed along the anterior-posteri or compartment boundary.2002

    • Author(s)
      Inaki, M.
    • Journal Title

      Mech. Develop. 116

      Pages: 3-18

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Inducible expression of double strand RNA reveals a role of dFADD in the regulation of antibacterial response in Drosophila.2002

    • Author(s)
      Leulier, F., Vidal, S.S., Saigo, K., Ueda, R., Lemaitre, B.
    • Journal Title

      Curr. Biol. 12

      Pages: 996-1000

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] GETDB, a database compiling expression patterns and molecular locations of a collection of Ga14 enhancer traps.2002

    • Author(s)
      Hayashi, S., Ito, K., Sado, Y., Taniguchi, M., Akimoto, A., Takeuchi, H., Aigaki, T., Matsuzaki, F., Nakagoshi, H., Tanimura, T, Ueda, R., Uemura, T., Yoshihara, M., Goto, S.
    • Journal Title

      Genesis 34

      Pages: 58-61

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Requirements of high levels of Hedgehog signaling activity for medial-region cell fate determination in Drosophila leg : identification of pxb, a putative Hedgehog signaling attenuator gene repressed along the anterior-posterior compartment boundary.2002

    • Author(s)
      Inaki, M., Kojima, T., Ueda, R., Saigo, K.
    • Journal Title

      Mech. Develop. 116

      Pages: 3-18

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Requirement of Dicer and eIF2C translation initiation factors for short-interfering-RNA-mediated gene silencing in mammalian cells.2002

    • Author(s)
      Doi, N., Zenno, S., Ueda, R., Ohki-Hamazaki, H., Ui-Tei, K., Saigo, K.
    • Journal Title

      Curr. Biol. 13

      Pages: 41-46

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] The MAPKKK Mekkl regulates the expression of Turandot stress genes in response to septic injury in Drosophila.

    • Author(s)
      Brun, S.
    • Journal Title

      Genes to Cells (in press)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Systematic In Vivo RNAi Analysis of Putative Components of the Drosophila Cell Death Machinery.

    • Author(s)
      Leulier, F.
    • Journal Title

      Cell Death and Differ. (in press)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] The MAPKKK Mekk1 regulates the expression of Turandot stress genes in response to septic injury in Drosophila

    • Author(s)
      Brun, S., Vidal, S S., Spellman, P., Takahashi, K., Tricoire, H., Lemaitre, B.
    • Journal Title

      Genes to Cells, (in press)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Systematic In Vivo RNAi Analysis of Putative Components of the Drosophila Cell Death Machinery

    • Author(s)
      Leulier, F., Ribeiro, S P., Palmer, E., Tenev, T., Takahashi, K., Robertson, D., Zachariou, A., Pichaud, F., Ueda, R., Meier, P.
    • Journal Title

      Cell Death and Differentiation (in press)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Publications] Doi, N.: "Requirement of Dicer and eIF2C translation initiation factors for short-interfering-RNA-mediated gene silencing in mammalian cells."Curr.Biol.. 13. 41-46 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Kamiyama, S.: "Molecular cloning and identification of 3'-phosphoadenosine 5'-phosphosulfate transporter."J.Biol.Chem.. 278. 25958-25963 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Ui-Tei, K.: "siRNA sequence requirement for effective RNA interference in mammalian cells and chick embryos."Nucleic Acids Res.. 32. 936-948 (2004)

    • Related Report
      2003 Annual Research Report
  • [Publications] Pili-Floury, S.: "In vivo RNA interference analysis reveals an unexpected role for GNBP1 in the defence against Gram-positive bacterial infection in Drosophila adults."J.Biol.Chem.. 279. 12848-12853 (2004)

    • Related Report
      2003 Annual Research Report

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Published: 2003-04-01   Modified: 2018-03-28  

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