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Mechanism of organelle targeting and topogenesis of membrane proteins

Research Project

Project/Area Number 15013244
Research Category

Grant-in-Aid for Scientific Research on Priority Areas

Allocation TypeSingle-year Grants
Review Section Biological Sciences
Research InstitutionUniversity of Hyogo (2004)
Kyushu University (2003)

Principal Investigator

SAKAGUCHI Masao  University of Hyogo, Graduate School of Life Science, Professor, 大学院生命理学研究科, 教授 (30205736)

Project Period (FY) 2003 – 2004
Project Status Completed (Fiscal Year 2004)
Budget Amount *help
¥16,000,000 (Direct Cost: ¥16,000,000)
Fiscal Year 2004: ¥8,000,000 (Direct Cost: ¥8,000,000)
Fiscal Year 2003: ¥8,000,000 (Direct Cost: ¥8,000,000)
KeywordsBiomembrane / Organelle / Signal sequence / Topology / Membrane protein / Biosynthesis
Research Abstract

The primary objective of this study is to establish a reliable system for prediction of membrane topology, intracellular localization, and function of all membrane proteins encoded in the genome through elucidation of principal mechanisms for the topogenic process and the localization. On the basis of topogenic mechanisms on the endoplasmic reticulum, we have extensively examined the membrane integration of all the transmembrane segment of typical multispanning membrane proteins. We demonstrated that the type I signal anchor sequence can translocate N-terminal domain which is longer than we have expected. For the long N-domain translocation, no nucleotide triphosphates, no lumenal hsp70-homologue (BiP) are required. Ribosome plays an essential role for the translocation even after membrane targeting. The driving force for the N-domain translocation at the initial step is larger than that for the following continuous translocation. Furthermore, we systematically examined the signal sequences for targeting of membrane proteins to mitochondria and peroxisome. The long mitochondrial targeting presequence suppresses the co-translational targeting of hydrophobic membrane proteins to the endoplasmic reticulum mediated by signal recognition particle and translocon, and mediates the post-translational targeting to mitochondria. We elucidated targeting signals of mitochondrial outer membrane proteins, TOM22 and TOM20. To address the molecular mechanism of recognition of mitochondrial signal sequence, we established the system for expression, purification, and refolding of mitochondrial outer membrane protein translocation channel, TOM40.

Report

(3 results)
  • 2004 Annual Research Report   Final Research Report Summary
  • 2003 Annual Research Report
  • Research Products

    (23 results)

All 2006 2005 2004 Other

All Journal Article (17 results) Publications (6 results)

  • [Journal Article] Function of positive charges following signal-anchor sequences during translocation of the N-terminal domain2006

    • Author(s)
      Kida, Y. et al.
    • Journal Title

      J. Biol. Chem. 281

      Pages: 1152-1158

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Function of positive charges following signal-anchor sequences during translocation of the N-terminal domain2006

    • Author(s)
      Kida, Y., Morimoto, F., Mihara, K., Sakaguchi, M.
    • Journal Title

      J.Biol.Chem. 281

      Pages: 1152-1158

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Manipulation of membrane protein topology on the endoplasmic reticulum by a specific ligand in living cells2005

    • Author(s)
      Ikeda, M. et al.
    • Journal Title

      J. Biochem. 138

      Pages: 631-637

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Translocation of a long amino-terminal domain through ER membrane mediated by following signal-anchor sequence2005

    • Author(s)
      Kida, Y. et al.
    • Journal Title

      EMBO J. 24

      Pages: 3202-3213

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Topogenic properties of transmembrane segments of Arabidopsis thaliana NHX1 reveal a common topology model of the Na+/H+ exchanger family2005

    • Author(s)
      Sato, Y., Sakaguchi, M.
    • Journal Title

      J. Biochem. 138

      Pages: 425-431

    • NAID

      10017347623

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Switching the sorting mode of membrane proteins from co-translational ER targeting to post-translational mitochondrial import2005

    • Author(s)
      Miyazaki, E. et al.
    • Journal Title

      Mol. Biol. Cell 16

      Pages: 1788-1799

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Topogenesis of NHE1 : direct insertion of the membrane loop and sequestration of cryptic glycosylation and processing sites just after TM92005

    • Author(s)
      Sato, Y. et al.
    • Journal Title

      Biochem. Biophys. Res. Commun. 324

      Pages: 281-287

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Translocation of a long amino-terminal domain through ER membrane mediated by following signal-anchor sequence2005

    • Author(s)
      Kida, Y., Mihara, K., Sakaguchi, M.
    • Journal Title

      EMBO J. 24

      Pages: 3202-3213

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Manipulation of membrane protein topology on the endoplasmic reticulum by a specific ligand in living cells2005

    • Author(s)
      Ikeda, M., Kida, Y., Ikushiro, S., Sakaguchi, M.
    • Journal Title

      J.Biochem. 138

      Pages: 631-637

    • NAID

      10017348449

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Topogenic properties of transmembrane segments of Arabidopsis thaliana NHX1 reveal a common topology model of the Na^+/H^+ exchanger family2005

    • Author(s)
      Sato, Y., Sakaguchi, M.
    • Journal Title

      J.Biochem. 138

      Pages: 425-431

    • NAID

      10017347623

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Switching the sorting mode of membrane proteins from co-translational ER targeting to post-translational mitochondrial import2005

    • Author(s)
      Miyazaki, E., Kida, Y., Mihara, K., Sakaguchi, M.
    • Journal Title

      Mol.Biol.Cell 16

      Pages: 1788-1799

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Switching the sorting mode of membrane proteins from co-translational ER targeting to post-translational mitochondrial import2005

    • Author(s)
      Miyazaki, E. et al.
    • Journal Title

      Mol.Biol.Cell 16(in press)

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Topogenesis of NHE1 : direct insertion of the membrane loop and sequestration of cryptic glycosylation and processing sites just after TM92004

    • Author(s)
      Sato, Y., Ariyoshi, N., Mihara, K., Sakaguchi, M.
    • Journal Title

      Biochem.Biophys.Res.Commun. 324

      Pages: 281-287

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] 1型シグナルアンカー配列による膜トポロジー形成の研究2004

    • Author(s)
      阪口 雅郎 ら
    • Journal Title

      蛋白質核酸酵素 149

      Pages: 899-902

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Targeting and assembly of rat mitochondrial translocase of outer membrane 22 (TOM22) into the TOM complex2004

    • Author(s)
      Nakamura, Y. et al.
    • Journal Title

      J.Biol.Chem. 279

      Pages: 21223-21232

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Membrane-embedded C-terminal segment of rat mitochondrial TOM40 constitutes protein-conducting pore with enriched b-structure2004

    • Author(s)
      Suzuki, H. et al.
    • Journal Title

      J.Biol.Chem. 279

      Pages: 50619-50629

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Topogenesis of NHE12004

    • Author(s)
      Sato, Y. et al.
    • Journal Title

      Biochem.Biophys.Res.Commun. 324

      Pages: 281-287

    • Related Report
      2004 Annual Research Report
  • [Publications] 阪口 雅郎: "膜タンパク質のトポロジー形成:小胞体系と小胞体標的化回避"生化学. 75. 520-528 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Kanki, T.et al.: "The N-terminal region of the transmembrane domain of human erythrocyte band3 : Residues critical for membrane insertion and transport activity"J.Biol.Chem.. 278. 5564-5573 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Sato, Y.et al.: "Molecular dissection of the contribution of negatively and positively charged residues in S2, S3, and S4 to the final membrane topology of the voltage sensor in the K^+ channel, KAT1"J.Biol.Chem.. 278. 13227-13234 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Umigai, N.et al.: "Topogenesis of two transmembrane type K^+ channels, Kir 2.1 and KcsA"J.Biol.Chem.. 278. 40373-40384 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Horie, C.et al.: "Targeting and assembly of mitochondrial tail-anchored protein Tom5 to the TOM complex depend on a signal distinct from that of tail-anchored proteins dispersed in the membrane"J.Biol.Chem.. 278. 41462-41471 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Nakamura, Y.et al.: "Targeting and assembly of rat mitochondrial TOM22 into the TOM complex"J.Biol.Chem.. 279(in press). (2004)

    • Related Report
      2003 Annual Research Report

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Published: 2003-04-01   Modified: 2018-03-28  

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