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Microbiological environmental assessment in Southeast Asia

Research Project

Project/Area Number 15201006
Research Category

Grant-in-Aid for Scientific Research (A)

Allocation TypeSingle-year Grants
Section一般
Research Field Environmental impact assessment/Environmental policy
Research InstitutionOsaka University

Principal Investigator

NASU Masao  Osaka University, School of Pharmaceutical Sciences, Professor, 薬学研究科, 教授 (90218040)

Co-Investigator(Kenkyū-buntansha) KAWABATA Zen'ichiro  Osaka University, Research Institute for Humanity and Nature, Professor, 総合地球環境学研究所, 教授 (80108456)
SUZUKI Satoru  Ehime University, Center for Marine Environmental Studies, Professor, 沿岸環境科学研究センター, 教授 (90196816)
TANI Katsuji  Osaka University, Graduate School of Pharmaceutical Sciences, Lecturer, 薬学研究科, 講師 (50217113)
YAMAGUCHI Nobuyasu  Osaka University, Graduate School of Pharmaceutical Sciences, Assistant Professor, 薬学研究科, 助手 (20252702)
Project Period (FY) 2003 – 2005
Project Status Completed (Fiscal Year 2005)
Budget Amount *help
¥48,880,000 (Direct Cost: ¥37,600,000、Indirect Cost: ¥11,280,000)
Fiscal Year 2005: ¥14,300,000 (Direct Cost: ¥11,000,000、Indirect Cost: ¥3,300,000)
Fiscal Year 2004: ¥14,300,000 (Direct Cost: ¥11,000,000、Indirect Cost: ¥3,300,000)
Fiscal Year 2003: ¥20,280,000 (Direct Cost: ¥15,600,000、Indirect Cost: ¥4,680,000)
KeywordsSoutheast Asia / Aquatic environment / Microbes / Environmental evaluation / New methods / tet genes / Gene transfer / Algae / サスペンションアレイ / 藍藻 / 遺伝子 / 群集構造 / 病原細菌 / DNAマイクロアレイ / マイクロコズム
Research Abstract

Objective of this research project is to assure microbiological quality of fresh water in order to keep safety of aquatic environment in Southeast Asia.
Research results in FY2005
1.DNA microarray with newly designed probes was created. It consists of the oligonucleotide probes which corresponds to the 16S rRNA of bacteria. This DNA microarray provided us to obtain a convenient approach to detect various species of bacteria in aquatic environment simultaneously.
2.According to the research, bacterial physiological states can be estimated by fluorescence in situ hybridization with vital staining and quantification of mRNA of gyrB gene.
3.The frequencies of occurrence of tetracycline-resistant bacteria were higher in samples obtained at the sites in Kracheh (Cambodia) and Can Tho (Viet Nam) along the Mekong River than the sites in the lake Tonle Sape (Cambodia) and the Ho Chi Minh estuarine (Viet Nam). Various tetracycline genes were found in sediment of the Mekong River.
4.The extracellular metabolic products by Microcystis aeruginosa enhanced conjugal transfer of plasmid.

Report

(4 results)
  • 2005 Annual Research Report   Final Research Report Summary
  • 2004 Annual Research Report
  • 2003 Annual Research Report
  • Research Products

    (14 results)

All 2006 2005 2004

All Journal Article (14 results)

  • [Journal Article] Detection of food poisoning bacteria in fresh vegetable using DNA microarray2006

    • Author(s)
      Ikeda, M. et al.
    • Journal Title

      Journal of Health Science 52

      Pages: 36-42

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Simultaneous enumeration of viable Enterobacteriaceae and Pseudomonas spp. within three hours by multicolor fluorescence in situ hybridization with vital staining2006

    • Author(s)
      Kitaguchi A. et al.
    • Journal Title

      Journal of Microbiological Methods (in press)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] A combination of direct viable counting, fluorescence in situ hybridization and green fluorescent protein gene expression for estimating plasmid transfer at the single level2006

    • Author(s)
      Jorquera, M. et al.
    • Journal Title

      Microbes and Environments (in press)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Detection of food poisoning bacteria in fresh vegetable using DNA microarray2006

    • Author(s)
      Ikeda, M. et al.
    • Journal Title

      J.Health Sci. 52

      Pages: 36-42

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Simultaneous enumeration of viable Enterobacteriaceae and Pseudomonas spp.within three hours by multicolor fluorescence in situ hybridization with vital staining2006

    • Author(s)
      Kitaguchi, A. et al.
    • Journal Title

      J.Microbial.Methods (in press)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] A combination of direct viable counting, fluorescence in situ Hybridization, and green fluorescent protein gene expression for estimating plasmid transfer at the single level2006

    • Author(s)
      Jorquera, M. et al.
    • Journal Title

      Microb.Environ. (in press)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Detection of food poisoning bacteria in fresh vegetable using DNA microarray2006

    • Author(s)
      Ikeda, M., et al.
    • Journal Title

      Journal of Health Science 52

      Pages: 36-42

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Simultaneous enumeration of viable Enterobacteriaceae and Pseudomonas within three hours by multicolor fluorescence in situ hybridization with vital staining2006

    • Author(s)
      Kitaguchi, A., et al.
    • Journal Title

      Journal of Microbiological Methods 65

      Pages: 623-627

    • Related Report
      2005 Annual Research Report
  • [Journal Article] A combination of direct viable counting, fluorescence in situ hybridization and green fluorescent protein gene expression for estimating plasmid transfer at the single level2006

    • Author(s)
      Jorquera, M., et al.
    • Journal Title

      Microbes and Environments 21

      Pages: 101-111

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Development of phylogenetic oligonucleotide probes for screening foodborne bacteria2005

    • Author(s)
      Ikeda, M. et al.
    • Journal Title

      Journal of Health Science 51

      Pages: 469-476

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Development of phylogenetic oligonucleotide probes for screening foodborne bacteria2005

    • Author(s)
      Ikeda, M. et al.
    • Journal Title

      J.Health Sci. 51

      Pages: 469-476

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Development of phylogenetic oligonucleotide probes for screening foodborne bacteria2005

    • Author(s)
      Ikeda, M., et al.
    • Journal Title

      Journal of Health Science 51

      Pages: 469-476

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Occurrence of tetracycline resistance genes tet(M) and tet(S) in bacteria from marine aquaculture sites2004

    • Author(s)
      Kim, S-R., Nonaka, L., Suzuki, S.
    • Journal Title

      EMS Microbiology letters 237

      Pages: 147-156

    • Related Report
      2004 Annual Research Report
  • [Journal Article] The enhancement of conjugal plasmid pHBR1 transfer between bacteria in the presence of extracellular metabolic products produced by Mycrocystis aeruginosa2004

    • Author(s)
      Ueki, M., Matsui, K., Choi, K., Kawabata, Z.
    • Journal Title

      EMS Microbiology Ecology 51

      Pages: 1-8

    • Related Report
      2004 Annual Research Report

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Published: 2003-04-01   Modified: 2016-04-21  

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