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Studies on vertebrate developmental genes by transposon-mediated gene trapping

Research Project

Project/Area Number 15201041
Research Category

Grant-in-Aid for Scientific Research (A)

Allocation TypeSingle-year Grants
Section一般
Research Field 基礎ゲノム科学
Research InstitutionNational Institute of Genetics.

Principal Investigator

KAWAKAMI Koichi  National Institute of Genetics, Department of Developmental Genetics, Associate professor, 個体遺伝研究系, 助教授 (70195048)

Project Period (FY) 2003 – 2005
Project Status Completed (Fiscal Year 2005)
Budget Amount *help
¥35,620,000 (Direct Cost: ¥27,400,000、Indirect Cost: ¥8,220,000)
Fiscal Year 2005: ¥8,580,000 (Direct Cost: ¥6,600,000、Indirect Cost: ¥1,980,000)
Fiscal Year 2004: ¥8,580,000 (Direct Cost: ¥6,600,000、Indirect Cost: ¥1,980,000)
Fiscal Year 2003: ¥18,460,000 (Direct Cost: ¥14,200,000、Indirect Cost: ¥4,260,000)
KeywordsMolecular Biology / Developmental Genetics / Genome Biology / Zebrafish / Transposon / Transgenic fish / Gene expression / Gene trapping / エンハンサートラップ / インサーショナルミュータジェネシス / 器官形成 / wntシグナル / 挿入変異 / 転移酵素 / トランスジェニック動物
Research Abstract

(1)We injected a transposon-donor plasmid containing a To12 construct and mRNA encoding the transposase into zebrafish fertilized eggs and demonstrated that the transposon construct can be integrated in the genome of the germ cells very efficiently. This method is now widely used as a standard method to create transgenic fish.
(2)We constructed the To12 construct containing a splice acceptor and the GFP reporter gene and created random integration of this construct in the zebrafish genome. When the splice acceptor trapped a transcript of an endogenous gene, the GFP gene is expressed in a pattern similar to that of the endogenous gene. This was the first successful demonstration of gene trapping in zebrafish.
(3)We have been making efforts to distribute this useful methodology by publication of manuscripts, talks in international meetings, writing review articles, a training course and collaboration.
(4)In the course of the transposon studies in zebrafish, we also found that the To12 transposon system is also active in mouse and Xenopus. To12 will be a useful gene transfer vector in these model vertebrates.

Report

(4 results)
  • 2005 Annual Research Report   Final Research Report Summary
  • 2004 Annual Research Report
  • 2003 Annual Research Report
  • Research Products

    (30 results)

All 2005 2004 2003 Other

All Journal Article (26 results) Book (1 results) Publications (3 results)

  • [Journal Article] The zebrafish pob gene encodes a novel protein required for survival of red cone photoreceptor cells.2005

    • Author(s)
      Taylor, M. R.
    • Journal Title

      Genetics 170

      Pages: 263-273

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] DNA transposons in vertebrate functional genomics.2005

    • Author(s)
      Miskey, C.
    • Journal Title

      Cellular and Molecular Life Sciences 62

      Pages: 629-641

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Transposon tools and methods in zebrafish.2005

    • Author(s)
      Kawakami, K.
    • Journal Title

      Developmental Dynamics 234

      Pages: 244-254

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] The zebrafish pob gene encodes a novel protein required for survival of red cone photoreceptor cells.2005

    • Author(s)
      Taylor, M.R.
    • Journal Title

      Genetics 170

      Pages: 263-273

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Transposon tools and methods in zebrafish2005

    • Author(s)
      Koichi Kawakami
    • Journal Title

      Developmental Dynamics 234

      Pages: 244-254

    • Related Report
      2005 Annual Research Report
  • [Journal Article] The zebrafish pob gene encodes a novel protein required for survival of red cone photoreceptor cells2005

    • Author(s)
      Taylor, M.R., Kikkawa, S., Diez-Juan, A., Ramamurthy, V., Kawakami, K., Carmeliet, P., Brockerhoff, S.E.
    • Journal Title

      Genetics 170

      Pages: 263-273

    • Related Report
      2005 Annual Research Report
  • [Journal Article] The Zebrafish pob gene encodes a novel protein required for survival of red cone photoreceptor cells2005

    • Author(s)
      Taylor, M.R., Kikkawa, S., Diez-Juan, A., Ramamurthy, V., Kawakami, K., Carmeliet, P., Brockerhoff, S.E.
    • Journal Title

      Genetics Feb.16(on line publication)

    • Related Report
      2004 Annual Research Report
  • [Journal Article] DNA transposons in vertebrate functional genomics2005

    • Author(s)
      Miskey, C., Izsvak, Z., Kawakami, K., Ivics, Z.
    • Journal Title

      Cellular and Molecular Life Sciences 62

      Pages: 629-641

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Transposition of the Tol2element, an Ac-like element from the Japanese medaka fish Oryzias latipes, in mouse embryonic stem cells.2004

    • Author(s)
      Kawakami, K.
    • Journal Title

      Genetics 166

      Pages: 895-899

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] A transposon-mediated gene trap approach identifies developmentally regulated genes in zebrafish.2004

    • Author(s)
      Kawakami, K.
    • Journal Title

      Developmental Cell 7

      Pages: 133-144

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Excision of the Tol2 transposable element of the medaka fish Oryzias latipes in Xenopus laevis and Xenopus tropicalis.2004

    • Author(s)
      Kawakami, K.
    • Journal Title

      Gene 338

      Pages: 93-98

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] The status, quality, and expansion of the NIH full-length cDNA project : The mammalian gene collection (MGC)2004

    • Author(s)
      MGC Project Team
    • Journal Title

      Genome Research 14

      Pages: 2121-2127

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Transgenesis and gene trap methods in zebrafish by using the Tol2 transposable element2004

    • Author(s)
      Kawakami, K.
    • Journal Title

      Methods in Cell Biology 77

      Pages: 201-222

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] ゼブラフィッシュの時空間特異的な遺伝子発現2004

    • Author(s)
      小谷友也
    • Journal Title

      蛋白質核酸酵素 49

      Pages: 2111-2116

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Transposition of the To12 element, an Ac-like element from the Japanese medaka fish Oryzias latipes, in mouse embryonic stem cells.2004

    • Author(s)
      Kawakami, K.
    • Journal Title

      Genetics 166

      Pages: 895-899

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Excision of the To12 transposable element of the medaka fish Oryzias latipes in Xenopus laevis and Xenopus tropicalis.2004

    • Author(s)
      Kawakami, K.
    • Journal Title

      Gene 338

      Pages: 93-98

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Transgenesis and gene trap methods in zebrafish by using the To12 transposable element2004

    • Author(s)
      Kawakami, K.
    • Journal Title

      Methods in Cell Biology 77

      Pages: 201-222

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] The transposon-mediated gene trap method in Zebrafish2004

    • Author(s)
      Kotani, T.
    • Journal Title

      Tanpakushitsu Kakusan Koso 49

      Pages: 2111-2116

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] A transposon-mediated gene trap approach identifies developmentally regulated genes in zebrafish2004

    • Author(s)
      Kawakami, K., Takeda, H., Kawakami, N., Kobayashi, M., Matsuda, N., Mishina, M.
    • Journal Title

      Developmental Cell 7

      Pages: 133-144

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Excision of the Tol2 transposable element of the medaka fish Orvzias latipes in Xenopus laevis and Xenopus tropicalis2004

    • Author(s)
      Kawakami, K., Imanaka, K., Itoh, M., Taira, M.
    • Journal Title

      Gene 338

      Pages: 93-98

    • Related Report
      2004 Annual Research Report
  • [Journal Article] The status, quality, and expansion of the NIH full-length cDNA project : The mammalian gene collection (MGC)2004

    • Author(s)
      Gerhard, D.S., 113 authors
    • Journal Title

      Genome Research 14

      Pages: 2121-2127

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Transgenesis and gene trap methods in zebrafish by using the Tol2 transposable element2004

    • Author(s)
      Koichi Kawakami
    • Journal Title

      Methods in Cell Biology 77

      Pages: 201-222

    • Related Report
      2004 Annual Research Report
  • [Journal Article] The complexity of alternative splicing of hagoromo mRNAs is increased in an explosively speciated lineage in East African cichlids.2003

    • Author(s)
      Terai, Y.
    • Journal Title

      Proc. Natl. Acad. Sci. USA 100

      Pages: 12798-12803

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Fugu ESTs : New resources for transcription analysis and genome annotation.2003

    • Author(s)
      Clark, M. S.
    • Journal Title

      Genome Research 13

      Pages: 2747-2753

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] The complexity of alternative splicing of hagoromo mRNAs is increased in an explosively speciated lineage in East African cichlids.2003

    • Author(s)
      Terai, Y.
    • Journal Title

      Proc.Natl.Acad.Sci. USA 100

      Pages: 12798-12803

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Fugu ESTs : New resources for transcription analysis and genome annotation.2003

    • Author(s)
      Clark, M.S.
    • Journal Title

      Genome Research 13

      Pages: 2747-2753

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Book] ゲノミクス・プロテオミクスの新展開(今中忠行監修)2004

    • Author(s)
      川上浩一
    • Publisher
      エヌ・ティー・エス
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Publications] Terai, Y., Morikawa, N., Kawakami, K., Okada, N.: "The complexity of alternative splicing of hagoromo mRNAs is increased in an explosively speciated lineage in East African cichlids."Proc.Natl.Acad.Sci.USA. 100. 12798-12803 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Clark, M.S., Edwards, Y.J.K., Peterson, D., Clifton, S.W., Thompson, A.J., Sasaki, M., Suzuki, Y., Kikuchi, K., Watabe, S., Kawakami, K., Sugano, S., Elgar, G., Johnson, S.L.: "Fugu ESTs : New resources for transcription analysis and genome annotation."Genome Research. 13. 2747-2753 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Kawakami, K., Noda, T.: "Transposition of the Tol2 element, an Ac-like element from the Japanese medaka fish Oryzias latipes, in mouse embryonic stem cells."Genetics. 166. 895-899 (2004)

    • Related Report
      2003 Annual Research Report

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Published: 2003-04-01   Modified: 2016-04-21  

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