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Automated modeling, quantification, and uncertainty evaluation of branching tubular and sheet structures from 3D medical images

Research Project

Project/Area Number 15300059
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Perception information processing/Intelligent robotics
Research InstitutionOsaka University

Principal Investigator

SATO Yoshinobu  Osaka University, Graduate School of Medicine, Associate Professor, 医学系研究科, 助教授 (70243219)

Co-Investigator(Kenkyū-buntansha) TAMURA Shinichi  Osaka University, Graduate School of Medicine, Professor, 医学系研究科, 教授 (30029540)
JOHKOH Takeshi  Osaka University, Graduate School of Medicine, Professor, 医学系研究科, 教授 (20263270)
NISHII Takashi  Osaka University, Graduate School of Medicine, Assistant, 医学系研究科, 助手 (70304061)
HORI Masatoshi  Osaka University, Graduate School of Medicine, Assistant, 医学系研究科, 助手 (00346206)
Project Period (FY) 2003 – 2005
Project Status Completed (Fiscal Year 2005)
Budget Amount *help
¥14,600,000 (Direct Cost: ¥14,600,000)
Fiscal Year 2005: ¥2,700,000 (Direct Cost: ¥2,700,000)
Fiscal Year 2004: ¥4,100,000 (Direct Cost: ¥4,100,000)
Fiscal Year 2003: ¥7,800,000 (Direct Cost: ¥7,800,000)
Keywordsridge line extraction / ridge plane extraction / vessel extraction / vessel tracking / branch analysis / multiscale filter / multiorientation filter / scale space / 3次元画像 / 画像計測 / 等方性解像度 / 点広がり関数 / 多重解像度解析 / ヘッセ行列 / 血管 / 肺胞 / 多重スケール法 / 関節軟骨 / 3次元医用画像 / 精密定量化 / 3次元モデリング / 精度解析 / 超解像度
Research Abstract

Accurate quantification incorporating imaging conditions and uncertainty analysis
The measurement error of the sheet width due to limited resolution of the imaging processes and blurring involved in edge detection was theoretically analyzed. Measuring the thickness of sheet-like (or plate-like) anatomical structures, such as articular cartilages and brain cortex, in 3D magnetic resonance (MR) images is often an important diagnostic procedure. The purpose of this paper is to investigate the fundamental limits to the accuracy of thickness determination in MR images. Given imaging and postprocessing parameters, the characteristics of thickness determination accuracy are derived by means of a theoretical simulation method, focusing especially on the effect of sheet structure orientation on accuracy in the case of noncubic (anisotropic) voxels. The theoretical simulation was validated by in vitro experiments.
The effects of the PSF were incorporated into the width measurement procedure by for … More mulating it by an inverse problem. A method fully utilizes multiscale line filter responses to estimate the PSF of a scanner and diameters of small tubular structures based on the PSF. The estimation problem is formulated as a least square fitting of a sequence of multiscale responses obtained at each medial axis point to the precomputed multiscale response curve for the ideal line model. The method was validated through phantom experiments and demonstrated to `accurately measure small-diameter structures which are significantly overestimated by conventional methods based on the full width half maximum (FWHM) and zero-crossing edge detection.
Extraction of branching tubular structures
We develop a branch detector using multi-orientation analysis, which is especially effective for peripheral vessels under low contrast conditions. We integrate the proposed branch detector into a hybrid vessel tracking system, which adaptively selects two different mechanisms of branch detectors based on contrast evaluations by analyzing local intensity distribution. The proposed branch detector is used in low contrast case while a conventional method based on region growing in high contrast case. The hybrid tracking system copes with both of the stability in high contrast case and the robustness in low contrast case. The proposed method was shown to be effective through ROC analysis using abdominal CT data sets. We also showed that the proposed method could extract 90% of hepatic arteries observable by a radiologist in the cross-sectional images using 19 abdominal CT data sets. Less

Report

(4 results)
  • 2005 Annual Research Report   Final Research Report Summary
  • 2004 Annual Research Report
  • 2003 Annual Research Report
  • Research Products

    (25 results)

All 2006 2005 2004 2003 Other

All Journal Article (24 results) Publications (1 results)

  • [Journal Article] Automated segmentation of acetabular cartilage in CT images of the hip2006

    • Author(s)
      Zoroofi RA
    • Journal Title

      Computer Assisted Radiology and Surgery : 20th International Symposium and Exhibition (CARS2006), Osaka, Japan (掲載予定)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Annual Research Report 2005 Final Research Report Summary
  • [Journal Article] Automated segmentation of acetabular cartilage in CT images of the hip2006

    • Author(s)
      Zoroofi RA
    • Journal Title

      Computer Assisted Radiology and Surgery : 20th International Symposium and Exhibition (CARS200G), Osaka, Japan (In Press)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Automated segmentation of acetabular cartilage in MR images of the hip2006

    • Author(s)
      Zoroofi RA
    • Journal Title

      IEICE Technical Report, MI2005-42 Vol.105, No.303

      Pages: 63-68

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Annual Research Report 2005 Final Research Report Summary
  • [Journal Article] 近傍濃淡情報を用いた分岐点解析による肝臓CT画像からの血管3次元木構造の抽出手法2006

    • Author(s)
      山本宗主
    • Journal Title

      電子情報通信学会技術研究報告,MI2005-80 Vol.105, no.579

      Pages: 57-60

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Automated segmentation of acetabular cartilage in MR images of the hip2005

    • Author(s)
      Zoroofi RA
    • Journal Title

      IEICE Technical Report, MI2005-42 Vol.105,No.303

      Pages: 63-68

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Multiscale vessel tracking and quantification from isotropic CT volume data2005

    • Author(s)
      Sato Yoshinobu
    • Journal Title

      IEICE Technical Report, MI2005-49 Vol.105,No.303

      Pages: 103-108

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Hessian-based multiscale enhancement, description, and quantification of second-order 3D local structures from medical volume data2005

    • Author(s)
      Sato Yoshinobu
    • Journal Title

      Handbook of Medical Image Analysis, Vol.II, Segmentation Models Part B, Suri, J Wilson D, and Laxminarayan S(eds.), Kluwer Academic Publishers, New York NY.(書籍内論文) Vol.II

      Pages: 531-589

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Multiscale vessel tracking and quantification from isotropic CT volume data2005

    • Author(s)
      Sato Yoshinobu
    • Journal Title

      IEICE Technical Report, MI2005-49 Vol.105, No.303

      Pages: 103-108

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Hessian-based multiscale enhancement, description, and quantification of second-order 3D local structures from medical volume data2005

    • Author(s)
      Sato Yoshinobu
    • Journal Title

      Handbook of Medical Image Analysis, Segmentation Models Part B (Suri, J Wilson D, and Laxminarayan S (eds.))(Kluwer Academic Publishers, New York NY) Vol.II

      Pages: 531-589

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Multiscale vessel tracking and quantification from isotropic CT volume data2005

    • Author(s)
      Sato Y
    • Journal Title

      IEICE Technical Report, MI2005-49 Vol.105, No.303

      Pages: 103-108

    • Related Report
      2005 Annual Research Report
  • [Journal Article] MR画像における近接した2薄面体の厚み計測精度の解析,2005

    • Author(s)
      程遠志
    • Journal Title

      Medical Imaging Technology, 23(4)

      Pages: 259-268

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Hessian-based multiscale enhancement, description, and quantification of second-order 3D local structures from medical volume data2005

    • Author(s)
      Sato Y
    • Journal Title

      Handbook of Medical Image Analysis, Vol.II, Segmentation Models Part B, Suri, J Wilson D, and Laxminarayan S (eds.), Kluwer Academic Publishers, New York NY, (書籍内論文) Vol.II,

      Pages: 531-589

    • Related Report
      2005 Annual Research Report
  • [Journal Article] 3次元MR画像からの接近2薄面体の厚み計測制度の解析2005

    • Author(s)
      程 遠志
    • Journal Title

      第10回三次元CT・MRI研究会

      Pages: 8-8

    • Related Report
      2004 Annual Research Report
  • [Journal Article] 等方性解像度の3次元CTデータを用いた細血管径の精密設計2005

    • Author(s)
      佐藤 嘉伸
    • Journal Title

      第10回三次元CT・MRI研究会

      Pages: 9-9

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Accurate quantification of small-diameter tubular structures in isotropic CT volume data based on multiscale line filter responses2004

    • Author(s)
      Sato Yoshinobu
    • Journal Title

      Lecture Notes in Computer Science, (Proc.7th InternationalConference on MICCAI 2004, Saint-Malo, France) 3216,Part I

      Pages: 508-515

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Quantitative analysis of alveolar structures using high-resol ution 3D-CT data2004

    • Author(s)
      Fujimoto S
    • Journal Title

      Radiological Society of North America, 90th Scientific Assembly and Annual Meeting(RSNA2004), Chicago

      Pages: 350-351

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Three-dimensional distribution of acetabular cartilage thickness in patients with hip dysplasia : a fully automated computational analysis of MR imaging.2004

    • Author(s)
      Nishii T
    • Journal Title

      Osteoarthritis Cartilage 12(8)

      Pages: 650-657

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Accurate quantification of small-diameter tubular structures in isotropic CT volume data based on multiscale line filter responses2004

    • Author(s)
      Sato Yoshinobu
    • Journal Title

      Lecture Notes in Computer Science, (Proc.7th International Conference on MICCAI 2004, Saint-Malo, France) 3216, Part I

      Pages: 508-515

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Quantitative analysis of alveolar structures using high-resolution 3D-CT data2004

    • Author(s)
      Fujimoto Shinichi
    • Journal Title

      Radiological Society of North America, 90th Scientific Assembly and Annual Meeting (RSNA2004), Chicago

      Pages: 350-351

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Three-dimensional distribution of acetabular cartilage thickness in patients with hip dysplasia a fully automated computational analysis of MR imaging.2004

    • Author(s)
      Nishii T
    • Journal Title

      Osteoarthritis Cartilage 12(8)

      Pages: 650-657

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Accurate quantification of small-diameter tubular structures in isotropic CT volume data based on multiscale line filter responses2004

    • Author(s)
      Sato Y
    • Journal Title

      Lecture Notes in Computer Science,(Proc.7th International Conference on MICCAI 2004,Saint-Malo, France) 3216、Part I

      Pages: 508-515

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Quantitative analysis of alveolar structures using high-resolution 3D-CT data2004

    • Author(s)
      Fujimoto S
    • Journal Title

      Radiological Society of North America,90th Scientific Assembly and Annual Meeting (RSNA2004),Chicago

      Pages: 350-351

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Limits on the accuracy of 3D thickness measurement in magnetic resonance images …Effects of voxel anisotropy…2003

    • Author(s)
      Sato Yoshinobu
    • Journal Title

      IEEE Transactions on Medical Imaging 22(9)

      Pages: 1076-1088

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Limits on the accuracy of 3D thickness measurement in magnetic resonance images --- Effects of voxel anisotropy --2003

    • Author(s)
      Sato Yoshinobu
    • Journal Title

      IEEE Transactions on Medical Imaging 22(9)

      Pages: 1076-1088

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Publications] Sato Yoshinobu: "Limits on the accuracy of 3D thickness measurement in magnetic resonance images---Effects of voxel anisotropy---"IEEE Transactions on Medical Imaging. 22(9). 1076-1088 (2003)

    • Related Report
      2003 Annual Research Report

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Published: 2003-04-01   Modified: 2016-04-21  

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