• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

Analysis of charge transfer and I-V property for the DNA chip by quantum chemical calculations

Research Project

Project/Area Number 15310088
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Nanomaterials/Nanobioscience
Research InstitutionToyohashi University of Technology

Principal Investigator

KURITA Noriyuki  Toyohashi University of technology, Department of engineering, Associate professor, 工学部, 助教授 (40283501)

Co-Investigator(Kenkyū-buntansha) TANAKA Shigenori  Kobe University, Graduate school of science and technology, Professor, 大学院・自然科学研究科, 教授 (10379480)
伊藤 聡  東芝, 研究開発センター, 主任研究員(研究職)
Project Period (FY) 2003 – 2005
Project Status Completed (Fiscal Year 2005)
Budget Amount *help
¥13,200,000 (Direct Cost: ¥13,200,000)
Fiscal Year 2005: ¥2,400,000 (Direct Cost: ¥2,400,000)
Fiscal Year 2004: ¥2,500,000 (Direct Cost: ¥2,500,000)
Fiscal Year 2003: ¥8,300,000 (Direct Cost: ¥8,300,000)
KeywordsDNA chip / molecular dynamics simulation / molecular orbital calculation / DNA charge transfer / crrent-voltage property / quantum chemical calculation / 電流電圧特性 / フロンティア分子軌道 / 電荷平衡法 / フラグメント分子軌道法
Research Abstract

Electrochemical DNA chips determine the sequence of DNA bases by detecting the change in charge conductivity through single- or double-strand DNA. Experimentally, double-strand DNAs were found to conduct much greater electric current than single-strand DNAs. To gain insight into the underlying mechanism leading to such a disparity in charge conductivity, the hole/electron conductivities in single- and double-strand DNAs were theoretically examined by molecular dynamics and molecular orbital (MO) calculations. The hole/electron transfer integrals between the neighboring DNA bases were estimated from the frontier MO energy levels. The current-voltage characteristics of single- and double-strand DNAs, derived from the transfer integrals and the site energy of each DNA base, are qualitatively in agreement with experiment.

Report

(4 results)
  • 2005 Annual Research Report   Final Research Report Summary
  • 2004 Annual Research Report
  • 2003 Annual Research Report
  • Research Products

    (23 results)

All 2006 2005 2004 2003 Other

All Journal Article (17 results) Publications (6 results)

  • [Journal Article] Density-functional calculations on DNA-DNA,ONA-DNA and PNA-PNA double strands2006

    • Author(s)
      Natsume, T., Ishikawa, Y., Dedachi, K., Kurita, N.
    • Journal Title

      Chemical Physics Letters 418

      Pages: 239-244

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Density-functional calculations on DNA-DNA, PNA-DNA and PNA-PNA double strands2006

    • Author(s)
      Natsume, T., Ishikawa, Y., Dedachi, K., Kurita, N.
    • Journal Title

      Chemical Physics Letters 418

      Pages: 239-244

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Annual Research Report 2005 Final Research Report Summary
  • [Journal Article] Investigation of a Kubo-formula-based approach to estimate DNA conductance in an atomistic model2005

    • Author(s)
      Starikov, E., Tanaka, S., Kurita, N., Sengoku, Y., Natsume, T., Wenzel, W.
    • Journal Title

      The European Physical Journal E 18

      Pages: 437-445

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Annual Research Report 2005 Final Research Report Summary
  • [Journal Article] Charge Transfer through Double-strand DNA and its Base-mismatched Ones : Theoretical Analysis Based on Semiempirical Molecular Orbital Calculations2005

    • Author(s)
      Natsume, T., Dedachi, K., Tanaka, S., Higuchi, T., Kurita, N.
    • Journal Title

      Chemical Physics Letters 408

      Pages: 381-388

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Annual Research Report 2005 Final Research Report Summary
  • [Journal Article] The Structure of Watson-Crick DNA Base Pairs Obtaned by MP2 Optimization2005

    • Author(s)
      Kurita, N., Danilov, V.I., Anisimov, V.
    • Journal Title

      Chemical Physics Letters 404

      Pages: 164-170

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Charge transfer through double-strand DNA and its base-mismatched ones : theoretical analysis based on semiempirical molecular orbital calculations2005

    • Author(s)
      Natsume, T., Dedachi, K., Tanaka, S., Higuchi, T.Kurita, N.
    • Journal Title

      Chemical Physics Letters 408

      Pages: 381-388

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] The Structure of Watson-Crick DNA Base Pairs Obtained by MP2 Optimization2005

    • Author(s)
      Kurita, N., Danilov, V.I., Anisimov, V.
    • Journal Title

      Chemical Physics Letters 404

      Pages: 164-170

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Annual Research Report 2005 Final Research Report Summary
  • [Journal Article] 1重鎖及び2重鎖DNAの電流電圧特性の理論的解析2004

    • Author(s)
      出立兼一, 夏目貴行, 田中成典, 樋口高年, 栗田典之
    • Journal Title

      J. Comput. Aided Chem. 5

      Pages: 52-61

    • NAID

      130004428057

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] 密度汎関数法に基づくフラグメント分子軌道法を用いたDNA電子状態計算2004

    • Author(s)
      仙石康雄, 松岡誠, 杉木真一郎, 田中成典, 栗田典之, 関野秀男
    • Journal Title

      J. Comput. Aided Chem. 5

      Pages: 1-8

    • NAID

      130004428053

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Charge transfer through single and double-strabd DNAs : theoretical analysis based on molecular orbital calculations2004

    • Author(s)
      Dedachi, K., Natsume, T., Tanaka, S., Higuchi, T., Kurita, N.
    • Journal Title

      J.Comput.Aided Chem. 5

      Pages: 52-61

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] DFT-FMO calculations on electronic states of DNA2004

    • Author(s)
      Sengoku, Y., Matsuoka, M., Sugiki, S., Tanaka, S., Kurita, N., Sekino, H.
    • Journal Title

      J.Comput.Aided Chem. 5

      Pages: 1-8

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Charge Transfer in Duplex DNA Containing Mismatch2003

    • Author(s)
      Okada, A., Yokojima, S., Kurita, N., Sengoku, Y., Tanaka, S.
    • Journal Title

      Journal of Molecular Structure 630

      Pages: 283-290

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Hydrogen Bonding of DNA Base Pairs by Consistent Charge Equilibration Method Combined with Universal Force Field2003

    • Author(s)
      Ogawa, T., Kurita, N., Sekino, H., Kitao, O., Tanaka, S.
    • Journal Title

      Chemical Physics Letters 374

      Pages: 271-278

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Electronic Properties of DNA Binding Site in Transcription OmpR Family : Semiempirical Molecular Orbital Calculations2003

    • Author(s)
      Kurita, N., Sengoku, Y., Sekino, H.
    • Journal Title

      Chemical Physics Letters 372

      Pages: 583-589

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Adjustment of Perdew-Wang Exchange Functional for Describing the Van der Waals and DNA Base-stacking Interactions2003

    • Author(s)
      Kurita, N., Inoue, H., Sekino, H.
    • Journal Title

      Chemical Physics Letters 370

      Pages: 161-169

    • Related Report
      2004 Annual Research Report
  • [Journal Article] DNA鎖の第一原理計算の現状と将来2003

    • Author(s)
      田中成典, 福澤薫, 中野達也, 栗田典之
    • Journal Title

      表面科学 24

      Pages: 664-670

    • NAID

      10012433680

    • Related Report
      2004 Annual Research Report
  • [Journal Article] ミスマッチのあるDNA二重鎖の電子状態計算2003

    • Author(s)
      夏目貴行, 仙石康雄, 栗田典之
    • Journal Title

      Journal of Computer Aided Chemistry 4

      Pages: 42-51

    • NAID

      130004428051

    • Related Report
      2004 Annual Research Report
  • [Publications] Okada, A., Yokojima, S., Kurita, N., Sengoku, Y., Tanaka, S.: "Charge Transfer in Duplex DNA Containing Mismatch"Journal of Molecular Structure. 630. 283-290 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Ogawa, T., Kurita, N., Sekino, H., Kitao, O., Tanaka, S.: "Hydrogen Bonding of DNA Base Pairs by Consistent Charge Equilibration Method Combined with Universal Force Field"Chemical Physics Letters. 374. 271-278 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Kurita, N., Sengoku, Y., Sekino, H.: "Electronic Properties of DNA Binding Site in Transcription OmpR Family : Semiempirical Molecular Orbital Calculations"Chemical Physics Letters. 372. 583-589 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Kurita, N., Inoue, H., Sekino, H.: "Adjustment of Perdew-Wang Exchange Functional for Describing the Van der Waals and DNA Base-stacking Interactions"Chemical Physics Letters. 370. 161-169 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] 田中成典, 福澤薫, 中野達也, 栗田典之: "DNA鎖の第一原理計算の現状と将来"表面科学. 24. 664-670 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] 夏目貴行, 仙石康雄, 栗田典之: "ミスマッチのあるDNA二重鎖の電子状態計算"Journal of Computer Aided Chemistry. 4. 42-51 (2003)

    • Related Report
      2003 Annual Research Report

URL: 

Published: 2003-04-01   Modified: 2016-04-21  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi