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Proteomic identification of molecules involved in neuronal polarity formation and analysis of their intracellular molecular networks

Research Project

Project/Area Number 15310140
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Applied genomics
Research InstitutionNara Institute of Science and Technology

Principal Investigator

INAGAKI Naoyuki  Nara Institute of Science and Technology, Biological Sciences, Associate Professor, バイオサイエンス研究科, 助教授 (20223216)

Co-Investigator(Kenkyū-buntansha) ITOH Hiroshi  Nara Institute of Science and Technology, Biological Sciences, Professor, バイオサイエンス研究科, 教授 (10183005)
Project Period (FY) 2003 – 2005
Project Status Completed (Fiscal Year 2005)
Budget Amount *help
¥15,300,000 (Direct Cost: ¥15,300,000)
Fiscal Year 2005: ¥6,100,000 (Direct Cost: ¥6,100,000)
Fiscal Year 2004: ¥6,800,000 (Direct Cost: ¥6,800,000)
Fiscal Year 2003: ¥2,400,000 (Direct Cost: ¥2,400,000)
KeywordsNeuron / Axon / Dendrite / Cell polarity / Growth cone / Proteome / Shootin / Singar / 2次元電気泳動法 / 網羅的機能解析 / 機能ゲノミクス / 極性 / 細胞内ネットワーク / 質量分析法
Research Abstract

The basic function of neurons is to receive, integrate and transmit signals. To do so, most neurons develop polarity by forming a single axon and multiple dendrites. However, little is known about the molecular basis of neuronal polarization. To approach this problem, we performed proteome analyses of cultured hippocampal neurons using highly sensitive large-gel two-dimensional electrophoresis (2-DE). In this project, we identified 94 proteins up-regulated during the initial step of neuronal polarization and 92 proteins enriched in axons, and analyzed the functions and molecular networks of novel proteins, shootin1 and singar.
Shootin1 became up-regulated during polarization of hippocampal neurons and began fluctuating accumulation among multiple neurites. Eventually shootin1 accumulated asymmetrically in a single neurite, which led to axon induction for polarization. Shootin1 was transported anterogradely to the growth cones and diffused back to the soma ; inhibiting this transport prevented its asymmetric accumulation in neurons. Disturbing the asymmetric organization of shootin1 by excess shootin1 disrupted polarization, while repressing shootin1 expression delayed polarization. Functional analysis suggested that shootin1 regulates neuronal polarity through the PI 3-kinase pathway. These results suggest that shootin1 is involved in the generation of internal asymmetric signals required for neuronal polarization.
Singar becomes up-regulated during polarization of cultured hippocampal neurons and remained at high levels thereafter. Knockdown of singar expression by RNA interference led to an increase in the population of neurons bearing surplus axons. Conversely, overexpression of singar suppressed the formation of surplus axons induced by excess level of shootin1. These results suggest that singar ensures the robustness of neuronal polarity by maintaining a single axon

Report

(4 results)
  • 2005 Annual Research Report   Final Research Report Summary
  • 2004 Annual Research Report
  • 2003 Annual Research Report
  • Research Products

    (32 results)

All 2006 2005 2004 2003 Other

All Journal Article (16 results) Book (3 results) Patent(Industrial Property Rights) (6 results) Publications (7 results)

  • [Journal Article] Vimentin-Ser82 as a memory phosphorylation site in astrocytes2006

    • Author(s)
      Oguri, T., et al.
    • Journal Title

      Genes Cells 11

      Pages: 531-540

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Vimentin-Ser82 as a memory phosphorylation site in astrocytes2006

    • Author(s)
      Oguri, T., Inoko, A., Shima, H., Izawa, I., Arimura, N., Yamaguchi, T., Inagaki, N., Kaibuchi, K., Kikuchi, K., Inagaki, M.
    • Journal Title

      Genes Cells 11

      Pages: 531-540

    • NAID

      120000961744

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Highly sensitive proteomics with two-dimensional electrophoresis2005

    • Author(s)
      Inagaki, N.
    • Journal Title

      IDENSHIIGAKU MOOK, Frontiers in disease proteomics (Medical-do)

      Pages: 76-81

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Large gel two-dimensional electrophoresis : improving recovery of cellular proteome2004

    • Author(s)
      Nomura, E., et al.
    • Journal Title

      Curr. Proteomics 1

      Pages: 35-39

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Acid-labile surfactant improves in-solution dodecylsulfate polyacrylamide gel protein digestion for matrix-assisted laser desorption/ionization mass spectrometric peptide mapping2004

    • Author(s)
      Inagaki, N., Katsuta, K..
    • Journal Title

      J. Mass Spectrometry 39

      Pages: 202-207

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Acid-labile surfactant improves in-solution dodecyl sulfate polyacrylamide gel protein digestion for matrix-assisted laser desorption/ionization mass spectrometric peptide mapping2004

    • Author(s)
      Nomura, E., Katsuta, K., Ueda, T., Toriyama, M., Mori, T., Inagaki, N.
    • Journal Title

      J.Mass Spectrometry 39

      Pages: 202-207

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Large gel two-dimensional electrophoresis : improving recovery of cellular proteome2004

    • Author(s)
      Inagaki, N., Katsuta, K.
    • Journal Title

      Curr.Proteomics 1

      Pages: 35-39

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Collapsin response mediator protein-2 accelerates axon regeneration of nerve-injured motor neurons of rat2003

    • Author(s)
      Suzuki, Y., et al.
    • Journal Title

      J.Neurochem. 86

      Pages: 1042-1050

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Multiple Large gel two-dimensional electrophoresis for proteomics2003

    • Author(s)
      勝田 和大, 他
    • Journal Title

      J. Electrophresis 47

      Pages: 27-31

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Electrophorese bidimensionnelle haute resolution sur gel extra large pour la proteomique2003

    • Author(s)
      Inagaki, N., et al.
    • Journal Title

      BIOforum Europe Edition Francaise 1

      Pages: 28-29

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] ポストシナプス・樹状突起スパインにおけるCaMKIIの空間的シグナリング2003

    • Author(s)
      稲垣 直之
    • Journal Title

      生体の科学 54

      Pages: 90-96

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Collapsin response mediator protein-2 accelerates axon regeneration of nerve-injured motor neurons of rat2003

    • Author(s)
      Suzuki, Y., Nakagomi, S., Namikawa, K., Kiryu-Seo, S., Inagaki, N., Kaibuchi, K., Aizawa, H., Kikuchi K., Kiyama H.
    • Journal Title

      J.Neurochem. 86

      Pages: 1042-1050

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Multiple Large gel two-dimensional electrophoresis for proteomics2003

    • Author(s)
      Katsuta, K., Nomura, E., Inagaki N.
    • Journal Title

      J.Electrophresis 47

      Pages: 27-31

    • NAID

      50000863729

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Spatial signaling of CaMKII in post-synapse dendritic spines2003

    • Author(s)
      Inagaki, N.
    • Journal Title

      SEITAI NO KAGAKU 54(2)

      Pages: 90-96

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Electrophorese bidimensionnelle haute resolution sur gel extra large pour la proteomique2003

    • Author(s)
      Inagaki, N., Katsuta, K., Nomura, E., Ueda, T., Toriyama, M., Mori, T.
    • Journal Title

      BIOforun Europe Edition Francaise 1

      Pages: 28-29

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Visualization of CaMKII signaling in a single spine2003

    • Author(s)
      Inagaki, N., Inagaki, M.
    • Journal Title

      Moving synapse and neuronal network (Shiosaka, S. (ed)) (Kinpou-do)

      Pages: 103-110

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Book] 遺伝子医学 MOOK 「疾患プロテオミクスの最前線」2005

    • Author(s)
      稲垣 直之
    • Publisher
      株式会社 メディカルドウ
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Book] 遺伝子医学 MOOK「疾患プロテオミクスの最前線」2005

    • Author(s)
      稲垣 直之
    • Total Pages
      6
    • Publisher
      株式会社メディカルドウ
    • Related Report
      2004 Annual Research Report
  • [Book] 動くシナプスと神経ネットワーク(塩坂 貞夫編)2003

    • Author(s)
      稲垣 直之, 稲垣 昌樹
    • Publisher
      金芳堂
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Patent(Industrial Property Rights)] Axon formation and elongation employing nerve growth cone localized molecule shootin1 or its splicing variants, and applications for nerve regeneration2005

    • Inventor(s)
      N.Inagaki, T.Shimada, M.Toriyama, O.Ohara, Y.Nagase
    • Industrial Property Rights Holder
      Nara Institute of Science and Technology, Kazusa DNA Research Institute
    • Filing Date
      2005-02-10
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Patent(Industrial Property Rights)] Singarの発現または機能抑制による神経軸索の形成・伸長と神経再生への応用2005

    • Inventor(s)
      稲垣 直之, 森 達也, 小原 牧, 長瀬 隆弘
    • Industrial Property Rights Holder
      国立大学法人奈良先端化学技術大学院大学, 財団法人かずさディー・エヌ・エー研究所
    • Industrial Property Number
      2005-313406
    • Filing Date
      2005-10-27
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Patent(Industrial Property Rights)] Singarの発現または機能抑制による神経軸索の形成・伸長と神経再生への応用2005

    • Inventor(s)
      稲垣 直之, 森 達也, 小原 収, 長瀬 隆弘
    • Industrial Property Rights Holder
      国立大学法人奈良先端科学技術大学院大学, 財団法人かずさディー・エヌ・エー研究所
    • Industrial Property Number
      2005-313406
    • Filing Date
      2005-10-27
    • Related Report
      2005 Annual Research Report
  • [Patent(Industrial Property Rights)] Axon formation and elongation employing nerve growth cone localized molecule shootin1 or its splicing variants, and applications for nerve regeneration2005

    • Inventor(s)
      N.Inagaki, T.Shimada, M.Toriyama, O.Ohara, T.Nagase
    • Industrial Property Rights Holder
      Nara Institute of Science and Technology Kazusa DNA Research Institute
    • Filing Date
      2005-02-10
    • Related Report
      2004 Annual Research Report
  • [Patent(Industrial Property Rights)] 神経成長円錐局在分子Shootinlもしくはそのスプライシングバリアントを利用した神経軸索の形成・伸長と神経再生への応用2004

    • Inventor(s)
      稲垣 直之, 島田 忠之, 鳥山 道則, 小原 牧, 長瀬 隆弘
    • Industrial Property Rights Holder
      国立大学法人奈良先端化学技術大学院大学, 財団法人かずさディー・エヌ・エー研究所
    • Industrial Property Number
      2004-235708
    • Filing Date
      2004-08-13
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Patent(Industrial Property Rights)] 神経成長円錐局在分子Shootin1もしくはそのスプライシングバリアントを利用した神経軸索の形成・伸長と神経再生への応用2004

    • Inventor(s)
      稲垣 直之, 島田 忠之, 鳥山 道則, 小原 收, 長瀬 隆弘
    • Industrial Property Rights Holder
      国立大学法人奈良先端科学技術大学院大学, 財団法人かずさディー・エヌ・エー研究所
    • Industrial Property Number
      2004-235708
    • Filing Date
      2004-08-13
    • Related Report
      2004 Annual Research Report
  • [Publications] Suzuki, Y., et al.: "Collapsin response mediator protein-2 accelerates axon regeneration of nerve-injured moter neurons of rat"J.Neurochem.. 86. 1042-1050 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Inagaki, N., et al.: "Electrophorese bidimensionnelle haute resolution sur gel extra large pour la proteomique"BIOforun Europe Edition Francaise. 1. 28-29 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Nomura, E., et al.: "Acid-labile surfactant improves in-solution dodecyl sulfate polyacrylamide gel protein digestion for matrix-assisted laser desorption/ionization mass spectrometric peptide mapping"J.Mass Spectrometry. 39・2. 202-207 (2004)

    • Related Report
      2003 Annual Research Report
  • [Publications] Inagaki, N., Katsuta, K.: "Large gel two-dimensional electrophoresis : improving recovery of cellular proteome"Curr.Proteomics. 1. 35-39 (2004)

    • Related Report
      2003 Annual Research Report
  • [Publications] 稲垣直之: "ポストシナプス・樹状突起スパインにおけるCaMKIIの空間的シグナリング"生体の科学. 54・2. 90-96 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] 勝田和大, 野村英子, 稲垣直之: "Multiple large gel two-dimensional electrophoresis for proteomics"J.Electrophresis. 47. 27-31 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] 稲垣直之, 稲垣昌樹(塩坂貞夫編): "動くシナプスと神経ネットワーク"金芳堂. 103-110 (2003)

    • Related Report
      2003 Annual Research Report

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Published: 2003-04-01   Modified: 2016-04-21  

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