• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

Ecological genetic studies on in-situ conservation of plant genetic resources in disturbed habitats

Research Project

Project/Area Number 15310161
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Resource conservation science
Research InstitutionOsaka Prefecture University

Principal Investigator

YAMAGUCHI Hirofumi  Osaka Prefecture University, Graduate School of Life and Environmental Sciences, Professor, 生命環境科学研究科, 教授 (20112542)

Co-Investigator(Kenkyū-buntansha) ABE Jun  Hokkaido University, Graduate School of Agriculture, Associate Professor, 農学研究科, 助教授 (00192998)
UMEMOTO Shinya  Kyoto University, Field Science Education and Research Center, Associate Professor, フィールド科学教育研究センター, 助教授 (60213500)
NAKAYAMA Yuichiro  Osaka Prefecture University, Graduate School of Life and Environmental Sciences, Assistant, 生命環境科学研究科, 助手 (50322368)
SOEJIMA Akiko  Osaka Prefecture University, Faculty of Science, Assistant, 理学系研究科, 助手 (00244674)
YAMANE Kyoko  Osaka Prefecture University, Graduate School of Life and Environmental Sciences, Assistant, 生命環境科学研究科, 助手 (00405359)
西野 貴子  大阪府立大学, 総合科学部, 助手 (20264822)
保田 謙太郎  佐賀大学, 海浜台地生物環境研究センター, 日本学術振興会特別研究員PD
Project Period (FY) 2003 – 2005
Project Status Completed (Fiscal Year 2005)
Budget Amount *help
¥12,300,000 (Direct Cost: ¥12,300,000)
Fiscal Year 2005: ¥3,600,000 (Direct Cost: ¥3,600,000)
Fiscal Year 2004: ¥4,000,000 (Direct Cost: ¥4,000,000)
Fiscal Year 2003: ¥4,700,000 (Direct Cost: ¥4,700,000)
Keywordswild genetic resources / cultivated plants / gene-flow / ecological genetics / SNP / フィールド調査 / 自生地保全
Research Abstract

In order to obtain the fundamental knowledge on in-situ conservation of plant genetic resources, field scientific approach, molecular phylogenetic approach and population biological approach were applied for describing the genetic and biological diversity of plants grown under disturbance. In East Asiatic plant species, we confirmed the association of dwarf type weedy oats in Yu-mai (naked oats) field in Yunnan, China, habitat segregation of Ceratotropis species (large or small population construction habit), adaptation to annual from perennial in a particular habitat in Echinochloa species, on-situ conservation of vulnerable species in traditional home garden, semi-cultivation of wild water pepper by expedition-base-survey on habitats of the wild relatives of cultivated plants. We developed SSR and SNP markers which are useful for ecological genetic study on ruderals. In phylogenetic studies, we determined geographical distribution of chloroplast DNA SNPs in Lilium, relationship of intertaxa of Symplocos, Aster ageratoides complex, Vitaceae species, Raphanus, Triticum-Aegilops complex, Cicer and diversity of SSR and ITS in Glycine and Echinochloa. In population dynamic studies, we characterize genetic diversity of natural populations under disturbance in wild azuki, wild soybean, Imperata, and composite species. We evaluated character state on each trees and/or geographical distribution and concluded that evolution of the traits unique to disturbed environment is fast with interaction between cultivated plant and its wild counterparts. In in-situ conservation of wild genetic resources, it is very important to gather the information on the genetic diversity created in prehistoric time, recent adaptation to habitat and maintenance mechanism of population

Report

(4 results)
  • 2005 Annual Research Report   Final Research Report Summary
  • 2004 Annual Research Report
  • 2003 Annual Research Report
  • Research Products

    (40 results)

All 2006 2005 2004 2003 Other

All Journal Article (30 results) Book (3 results) Publications (7 results)

  • [Journal Article] Effect of unprotected cultivation of GMO crops on natural ecosystem (in Japanese)2006

    • Author(s)
      H.Yamaguchi
    • Journal Title

      Series in Agriculture in 21 Century : In, Researches on GMO Crop (ed by Japan Agronomical Science Society)(Yokendo, Tokyo)

      Pages: 63-85

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] A molecular phylogeny of wild and cultivated Echinochloa in East Asia inferred from non-coding region sequences of trnT-L-F.2005

    • Author(s)
      H.Yamaguchi
    • Journal Title

      Weed Biology and Management 5・4

      Pages: 210-218

    • NAID

      10020519528

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Genetic diversity of vegetable water pepper (Persicaria hydropiper (L.) Spach as revealed by RAPD markers2005

    • Author(s)
      K.Yasuda
    • Journal Title

      Breeding Science 55・1

      Pages: 7-14

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Molecular analysis and physicochemical properties of electrophoretic variants of wild soybean Glycine soja storage protein2005

    • Author(s)
      Fukuda, T.
    • Journal Title

      J.Agri.Food Chem. 53

      Pages: 3685-3665

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Chloroplast DNA variations of cultivated radish and its wild relatives2005

    • Author(s)
      K.Yamane
    • Journal Title

      Plant Science 168

      Pages: 627-634

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Intra- and interspecific phylogenetic relationships among diploid Triticum-Aegilops species based on base pair substitutions, indels -and microsatellites in chloroplast non-coding sequences.2005

    • Author(s)
      K.Yamane
    • Journal Title

      Amer.Jour.Bot. 92

      Pages: 1887-1898

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Cytogeography of the Aster ageratoides complex in Korea.2005

    • Author(s)
      Soejima, A.
    • Journal Title

      Acta Phytotax.Geobot. 56

      Pages: 97-104

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] A molecular phylogeny of wild and cultivated Echinochloa in East Asia inferred from non-coding region sequences of trnT-L-F.2005

    • Author(s)
      H.Yamaguchi, A.Utano, K.Yasuda, A.Yano, A.Soejima
    • Journal Title

      Weed Biology and Management 5(4)

      Pages: 210-218

    • NAID

      10020519528

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Genetic diversity of vegetable water pepper (Persicaria hydropiper (L.) Spach. as revealed by RAPD markers.2005

    • Author(s)
      K.Yasuda, H.Yamaguchi
    • Journal Title

      Breeding Science 55(1)

      Pages: 7-14

    • NAID

      10014472813

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Cytogeography of the Aster ageratoides complex in Korea.2005

    • Author(s)
      A.Soejima, J.-H.Pak, T.Morita, M.Ito
    • Journal Title

      Acta Phytotax.Geobot. 56

      Pages: 97-104

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Chloroplast DNA variations of cultivated radish and its wild relatives..2005

    • Author(s)
      K.Yamane, Na Lu, O.Ohnishi
    • Journal Title

      Plant Science 168

      Pages: 627-634

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] A molecular phylogeny of wild and cultivated Echinochloa in East Asia inferred from non-coding region sequences of trnT-L-F.2005

    • Author(s)
      H.Yamaguchi, A.Utano, K.Yasuda, A.Yano, A.Soejima
    • Journal Title

      Weed Biology and Management 5・4

      Pages: 210-218

    • NAID

      10020519528

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Genetic diversity of vegetable water pepper (Persicaria hydropiper (L.) Spach as revealed by RAPD markers2005

    • Author(s)
      K.Yasuda, H.Yamaguchi
    • Journal Title

      Breeding Science 55・1

      Pages: 7-14

    • NAID

      10014472813

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Molecular analysis and physicochemical properties of electrophoretic variants of wild soybean Glycine soja storage protein2005

    • Author(s)
      Fukuda, T., N.Maruyama, A.Kanazawa, J.Abe, Y.Shimamoto, M.Hiemori, S.Utsumi
    • Journal Title

      J.Agri.Food Chem. 53

      Pages: 3685-3665

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Chloroplast DNA variations of cultivated radish and its wild relatives2005

    • Author(s)
      K.Yamane, Na Lu, O.Ohnishi
    • Journal Title

      Plant Science 168

      Pages: 627-634

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Intra- and interspecific phylogenetic relationships among diploid Triticum-Aegilops species based on base pair substitutions, indels and microsatellites in chloroplast non-coding sequences.2005

    • Author(s)
      K.Yamane, T.Kawahara
    • Journal Title

      Amer.Jour.Bot. 92,

      Pages: 1887-1898

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Genetic Diversity of Vegetable Water Pepper (Persicaria hydropiper (L.) Spach as Revealed by RAPD Markers.2005

    • Author(s)
      K.Yasuda, H.Yamaguchi
    • Journal Title

      Breeding Science 55(1)

      Pages: 7-14

    • NAID

      10014472813

    • Related Report
      2004 Annual Research Report
  • [Journal Article] A test for molecular identification of Japanese archaeological beans and phylogenetic relationship of wild and cultivated species of subgenus Ceratotropis (genus Vigna, Papilionaceae) using sequence variation in two non-coding regions of the trnL and trnF genes.2004

    • Author(s)
      Yano, A.
    • Journal Title

      Econ.Bot. 58,Suppl.

      Pages: 135-146

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Interspecific relationships of the genus Cicer L. (Fabaceae) based on trnT-F sequences.2004

    • Author(s)
      Javadi, F.
    • Journal Title

      Theor.Appl.Genet. 109・2

      Pages: 317-322

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Marker-assisted analysis for soybean hard seededness with isozyme and simple sequence repeat loci.2004

    • Author(s)
      Sakamoto, S.
    • Journal Title

      Breeding Science 54

      Pages: 133-139

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] A test for molecular identification of Japanese archaeological beans and phylogenetic relationship of wild and cultivated species of subgenus Ceratotropis (genus Vigna, Papilionaceae) using sequence variation in two non-coding regions of the trnL and trnF genes.2004

    • Author(s)
      A.Yano, K.Yasuda, H.Yamaguchi
    • Journal Title

      Econ.Bot. 58(Suppl.)

      Pages: 135-146

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Interspecific relationships of the genus Cicer L. (Fabaceae) based on trnT-F sequences.2004

    • Author(s)
      F.Javadi, H.Yamaguchi
    • Journal Title

      Theor.Appl.Genet. 109(2)

      Pages: 317-322

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Marker-assisted analysis for soybean hard seededness with isozyme and simple sequence repeat loci.2004

    • Author(s)
      S.Sakamoto, J.Abe, A.Kanazawa, Y.Shimamoto
    • Journal Title

      Breeding Science 54

      Pages: 133-139

    • NAID

      110001803277

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Interspecific relationships of the genus Cicer L.(Fabaceae) based on trnT-F sequences2004

    • Author(s)
      F.Javadi, H.Yamaguchi
    • Journal Title

      Theor.Appl.Genet. 109

      Pages: 317-322

    • Related Report
      2004 Annual Research Report
  • [Journal Article] A Test for Molecular Identification of Japanese Archaeological Beans and Phylogenetic Relationship of Wild and Cultivated Species of2004

    • Author(s)
      A.Yano, K.Yasuda, H.Yamaguchi
    • Journal Title

      Econ.Bot 58(suppl.)

      Pages: 135-146

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Marker-assisted analysis for soybean hard seededness with isozyme and simple sequence repeat loci2004

    • Author(s)
      Sakamoto, S., J.Abe, A.Kanazawa, Y.Shimamoto
    • Journal Title

      Breed.Sci. 54

      Pages: 133-139

    • NAID

      110001803277

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Phylogenetic analysis of Asian Symplocos(Symplocaceae) based on nrDNA and chloroplast DNA sequences2004

    • Author(s)
      Soejima, A., H.Nagamasu
    • Journal Title

      Journal of Plant Research 117

      Pages: 199-207

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Soybean germplasm pools in Asia revealed by nuclear SSRs2003

    • Author(s)
      Abe, J.
    • Journal Title

      Theor.Appl.Genet. 106

      Pages: 445-453

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Soybean germplasm pools in Asia revealed by nuclear SSRs.2003

    • Author(s)
      J.Abe, D.H.Xu, Y.Suzuki, A.Kanazawa, Y.Shimamoto
    • Journal Title

      Theor.Appl.Genet. 106

      Pages: 445-445

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Geographical distribution of chloroplast DNA variation in Imperata cylindrica in Japan (in Japanese)2003

    • Author(s)
      K.Yasuda, H.Shibayama
    • Journal Title

      Coastal Bioenvironment 2

      Pages: 51-58

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Book] シリーズ21世紀の農学「遺伝子組換え作物の研究」2006

    • Author(s)
      山口裕文
    • Publisher
      日本農学会, 養賢堂
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Book] シリーズ21世紀の農学「遺伝子組換え作物の研究」2006

    • Author(s)
      山口裕文
    • Publisher
      日本農学会・養賢堂(印刷中)
    • Related Report
      2005 Annual Research Report
  • [Book] 照葉樹林文化のつくる里山の景観 森林環境20052005

    • Author(s)
      山口裕文
    • Publisher
      森林文化協会・朝日新聞社
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Annual Research Report 2005 Final Research Report Summary
  • [Publications] F.Javadi, H.Yamaguchi: "Interspecific relationships of the genus Cicer L.(Fabaceae) based on trnT-F sequences."Theor.Appl.Genet.. (印刷中). (2004)

    • Related Report
      2003 Annual Research Report
  • [Publications] Abe.J., D.H.Xu, Y.Suzuki, A.Kanazawa, Y.Shimamoto: "Soybean germplasm pools in Asia revealed by nuclear SSRs."Theor.Appl.Genet.. 106. 445-453 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Sakamoto, S., J.Abe, A.Kanazawa, Y.Shimamoto: "Marker-assisted analysis for soybean hard seededness with isozyme and simple sequence repeat loci"Breed.Sci.. (印刷中). (2004)

    • Related Report
      2003 Annual Research Report
  • [Publications] Sakai, M.et al., J.Abe, Y.Shimamoto: "Phylogenetic relationships of the chloroplast genomes in the genus Glycine inferred from rout intergenic spacer sequences."Plant Syst.Evol.. 239. 29-54 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] F.Javadi, H.Yamaguchi: "RAPD and seed coat morphology variation in annual and perennial species of the genus Cicer L."Genetic Resources and Crop Evolution. (印刷中). (2004)

    • Related Report
      2003 Annual Research Report
  • [Publications] 保田謙太郎, 芝山秀次郎: "チガヤ(Imperata cylindrica)の葉緑体ゲノムの非コード領域に存在する塩基置換および挿入欠失パターンのPCR-RFLPによる識別."Coastal Bioenvironment. 2. 59-68 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] 山口裕文, 河瀬真琴: "雑穀の自然史-その起源と文化を求めて-"北海道大学図書刊行会. 247 (2003)

    • Related Report
      2003 Annual Research Report

URL: 

Published: 2003-04-01   Modified: 2016-04-21  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi