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Development of a system for enhancing protein thermostability in vivo using hyperthermophiles

Research Project

Project/Area Number 15350100
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Chemistry related to living body
Research InstitutionKyoto University

Principal Investigator

ATOMI Haruyuki  Kyoto University, Graduate School of Engineering, Associate Professor, 工学研究科, 助教授 (90243047)

Project Period (FY) 2003 – 2004
Project Status Completed (Fiscal Year 2004)
Budget Amount *help
¥15,200,000 (Direct Cost: ¥15,200,000)
Fiscal Year 2004: ¥5,800,000 (Direct Cost: ¥5,800,000)
Fiscal Year 2003: ¥9,400,000 (Direct Cost: ¥9,400,000)
KeywordsHyperthermophilic archaea / gene integration / gene complement / unfolded protein response / chaperonin / pyrF / uracil / Thermococcus / in vivo進化 / 超好熱菌 / 始原菌 / タンパク質の耐熱化 / 熱安定性 / 分子進化 / chaperonin HSP60 / Directed evolution
Research Abstract

We have been examining whether homologous genes from other archaeal strains could complement endogenous gene disruption in T.kodakaraensis and whether proteins with less thermostability could be subject to directed evolution in terms of increasing thermostability. T.kodakaraensis KUW1 is a strain whose pyrF and trpE genes are deleted. To this strain, we introduced pyrF genes from the hyperthermophilic archaeon Pyrococcus furiosus (optimum growth temperature 100℃) or the thermophilic archaeon Thermoplasma volcanium (optimum 60℃) via homologous recombination. We found that the recombinant strain with the P. furiosus pyrF gene exhibited uracil prototrophy, indicating that gene complementation had occurred. Similar results were obtained with the gene from T volcanium, however, consistent growth was observed only at temperatures at or below 75℃. Intriguingly, at 75℃, we found an intracellular accumulation of CpkB in this strain, but not in the wild type T.kodakaraensis KOD1 or in the strain harboring P.furiosus pyrF. As the 75℃ temperature is well below the optimal growth temperature of T.kodakaraensis, the accumulation of CpkB cannot be due to thermal stress. This raise the possibilities that CpkB expression is responding to the intracellular presence of partially denatured PyrF protein from T volcanium, a mechanism which corresponds to the unfolded protein response observed in bacteria and eukaryotes.

Report

(3 results)
  • 2004 Annual Research Report   Final Research Report Summary
  • 2003 Annual Research Report
  • Research Products

    (20 results)

All 2005 2004 2003 Other

All Journal Article (14 results) Publications (6 results)

  • [Journal Article] Complete genome sequence of the hyperthermophilic archaeon Thermococcus kodakaraensis KOD1 and comparison with Pyrococcus genomes2005

    • Author(s)
      T.Fukui, H.Atomi, T.Kanai, R.Matsumi, S.Fujiwara, T.Imanaka
    • Journal Title

      Genome Res 15・3

      Pages: 352-363

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Complete genome sequence of the hyperthermophilic archaeon Thermococcus kodakaraensis KOD1 and comparison with Pyrococcus genomes2005

    • Author(s)
      T.Fukui, H.Atomi, T.Kanai, R.Matsumi, S.Fujiwara, T.Imanaka
    • Journal Title

      Genome Res. 15(3)

      Pages: 352-363

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Complete genome sequence of the hyperhtermophilic archaeon Thermococcus Kodakaraensis KOD1 and comparison with Phrococcus Genomes2005

    • Author(s)
      T.Fukui, H.Atomi, T.Kanai, R.Matsumi, S.Fujiwara, T.Imanaka
    • Journal Title

      Genome Res. 15・3

      Pages: 352-363

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Thermostable carboxylesterases from hyperthermophiles2004

    • Author(s)
      H.Atomi, T.Imanaka
    • Journal Title

      Tetrahedron : Asymmetry 15

      Pages: 2729-2735

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Genetic evidence identifying the true gluconeogenic fructose-1, 6-bisphosphatase in Thermococcus kodakaraensis and other hyperthermophiles2004

    • Author(s)
      T.Sato, H.Imanaka, N.Rashid, T.Fukui, H.Atomi, T.Imanaka
    • Journal Title

      J. Bacteriol 186

      Pages: 5799-5807

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Reverse gyrase is not a prerequisite for hyperthermophilic life2004

    • Author(s)
      H.Atomi, R.Matsumi, T.Imanaka
    • Journal Title

      J. Bacteriol 186

      Pages: 4829-4833

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Genetic evidence identifying the true gluconeogenic fructose-1,6-bisphosphatase in Thermococcus kodakaraensis and other hyperthermophiles2004

    • Author(s)
      T.Sato, H.Imanaka, N.Rashid, T.Fukui, H.Atomi, T.Imanaka
    • Journal Title

      J.Bacteriol. 186

      Pages: 5799-5807

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Annual Research Report 2004 Final Research Report Summary
  • [Journal Article] Reverse' gyrase is not a prerequisite for hyperthermophilic life2004

    • Author(s)
      H.Atomi, R.Matsumi, T.Imanaka
    • Journal Title

      J Bacteriol. 186

      Pages: 4829-4833

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Concerted action of diacetylchitobiose deacetylase and exo-beta-D-glucosaminidase in a novel chitinolytic pathway in the hyperthermophilic archaeon Thermococcus kodakaraensis KOD12004

    • Author(s)
      T.Tanaka, T.Fukui, S.Fujiwara, H.Atomi, T.Imanaka
    • Journal Title

      J.Biol.Chem. 279

      Pages: 30021-30027

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Reverse gyrase is not a prerequisite for hyperthermophilic life2004

    • Author(s)
      H.Atomi, R.Matsumi, T.Imanaka
    • Journal Title

      J.Bacteriol. 186

      Pages: 4829-4833

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Description of Thermococcus kodakaraensis sp. now., a well studied hyperthermophilic archaeon previously reported as Pyrococcus sp. KOD12004

    • Author(s)
      H.Atomi, T.Fukui, T.Kanai, M.Morikawa, T.Imanaka
    • Journal Title

      Archaea 1

      Pages: 263-267

    • Related Report
      2004 Annual Research Report
  • [Journal Article] 超好熱菌の高温環境適応戦略2003

    • Author(s)
      跡見 晴幸, 今中 忠行
    • Journal Title

      生化学 75・7

      Pages: 561-575

    • NAID

      10011214257

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Hyperthermophiles and their adaptation to extremely high temperature2003

    • Author(s)
      H.Atomi, T.Imanaka
    • Journal Title

      Seikagaku Jul;75(7)

      Pages: 561-575

    • NAID

      10011214257

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] An improved and versatile transformation system allowing multiplegenetic manipulations of the hyperthermophilic archaeon Thermococcus kodakaraensis

    • Author(s)
      T.Sato, T.Fukui, H.Atomi, T.Imanaka
    • Journal Title

      Appl.Environ.Microbiol. (発表予定)

    • Related Report
      2004 Annual Research Report
  • [Publications] H.Atomi, T.Fukui, T.Kanai, M.Morikawa, T.Imanaka: "Description of Thermococcus kodakaraensis sp. nov., a well studied hyperthermophilic archaeon previously reported as Pyrococcus sp.KOD1"Archaea. 1・4(in press). (2004)

    • Related Report
      2003 Annual Research Report
  • [Publications] T.Kanamori, N.Kanou, H.Atomi, T.Imanaka: "Enzymatic characterization of a prokaryotic urea carboxylase"J.Bacteriol.. 186・9(in press). (2004)

    • Related Report
      2003 Annual Research Report
  • [Publications] T.Amo, H.Atomi, T.Imanaka: "Biochemical properties and regulated gene expression of the superoxide dismutase from the facultatively aerobic hyperthermophile pyrobaculum calidifontis"J.Bacteriol.. 185・21. 6340-6347 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] T.Tanaka, T.Fukui, H.Atomi, T.Imanaka: "Characterization of an exo-β-D-glucosaminidase involved in a novel chitinolytic pathway in Archaea"J.Bacteriol.. 185・17. 5175-5181 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] T.Sato, Toshiaki Fukui, H.Atomi, T.Imanaka: "Targeted gene disruption by homologous recombination in the hyperthermophilic archaeon Thermococcus kodakaraensis KOD1"J.Bacteriol.. 185・1. 210-220 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] 跡見晴幸, 今中忠行: "超好熱菌の高温環境適応戦略"生化学. 75・7. 561-575 (2003)

    • Related Report
      2003 Annual Research Report

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Published: 2003-04-01   Modified: 2016-04-21  

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