• Search Research Projects
  • Search Researchers
  • How to Use
  1. Back to previous page

Development of Super Resolution Bio-Phase Transmission Electron Microscopy

Research Project

Project/Area Number 15360036
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Applied physics, general
Research InstitutionOsaka University

Principal Investigator

TAKAI Yoshizo  Osaka University, Graduate School of Engineering, Professor, 大学院・工学研究科, 教授 (30236179)

Co-Investigator(Kenkyū-buntansha) KIMURA Yoshihide  Osaka University, Graduate School of Engineering, Associate Professor, 大学院・工学研究科, 助教授 (70221215)
NAGATOMI Takaharu  Osaka University, Graduate School of Engineering, Assistant Professor, 大学院・工学研究科, 助手 (90314369)
Project Period (FY) 2003 – 2004
Project Status Completed (Fiscal Year 2004)
Budget Amount *help
¥12,300,000 (Direct Cost: ¥12,300,000)
Fiscal Year 2004: ¥4,400,000 (Direct Cost: ¥4,400,000)
Fiscal Year 2003: ¥7,900,000 (Direct Cost: ¥7,900,000)
KeywordsTransmission Electron Microscope / DNA / Phase Electron Microscope / Three Dimensional Fourier Filtering / unstained biological sample / Aberration-Free observation / Spherical aberration Correction / 位相像観察
Research Abstract

Biological samples that are composed of light atoms show very little contrast in transmission electron microscopy(TEM). Only a small electron dose is allowed to obtain the image because the samples are easily damaged by the electron beam irradiation. Therefore, high resolution observation of biological samples is extremely difficult. In addition, an in-focus image shows little contrast due to the lack of an ideal phase plate. However, direct observation of unstained molecular structures seems to be a promising approach in identifying the segments of individual molecules and to understand their functions. We proposed a three-dimensional Fourier filtering method (3D-FFM) as a phase reconstruction method. In this method, a 3D Fourier transform is performed for a number of recorded through-focus images and a filtering shape function with aberration correction factors is applied to the obtained 3D Fourier spectrum. The phase image is finally obtained by performing an inverse 3D Fourier tran … More sform on the corrected 3D Fourier spectrum. Since the filtering shape function extracts only the linear image components that appear on the Ewald sphere, the image processing works well for improving the S/N ratio by excluding the non-linear image components and quantum noise in the images. This seems to be an indispensable advantage for observing unstained biological samples on a molecular scale.
In the present project, aberration-free phase images of deoxyribonucleic acid(DNA) were observed on a molecular scale level by a three-dimensional Fourier filtering method using a 200 kV high-resolution transmission electron microscope(TEM). To avoid the noise produced by the supporting film of the TEM sample, we prepared a special gold thin film with nano-sized holes. The DNA molecular fibers hanging across the holes were observed. The total dose required to obtain the image was about 200-300 electrons/Å^2. Although the molecular structure of the DNA seems to be heavily damaged, a helical-like structure is partially confirmed and fine structures with intervals of 3.4-4.5Å are partially resolved in the helical-like structure, which is similar to the DNA molecular model determined by J.D.Watson and F.H.C.Crick. In conclusion, super resolution bio-phase transmission electron microscopy could be successfully established by the present project. Less

Report

(3 results)
  • 2004 Annual Research Report   Final Research Report Summary
  • 2003 Annual Research Report
  • Research Products

    (20 results)

All 2005 2004 2003 Other

All Journal Article (17 results) Publications (3 results)

  • [Journal Article] Phase Transmission Electron Microscopy with Averration Correction Based on Active Defocus Modulation2005

    • Author(s)
      Y.Takai et al.
    • Journal Title

      Surf.Interface Anal. 37

      Pages: 248-251

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Annual Research Report 2004 Final Research Report Summary
  • [Journal Article] Phase Transmission Electron Microscopy with Aberration Correction Based on Active Defocus Modulation2005

    • Author(s)
      Y.Takai et al.
    • Journal Title

      Surf.Interface Anal No.37

      Pages: 248-251

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Aberration-free Phase Images of DNA Observed by Phase Transmission Electron Microscopy2004

    • Author(s)
      Y.Takai et al.
    • Journal Title

      8th Asia-Pacific Conference on Electron Microscopy 1

      Pages: 276-277

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Annual Research Report 2004 Final Research Report Summary
  • [Journal Article] Practical Method to Determine the Filter Shape Function Used in the Three-Dimensional Fourier Filtering Method2004

    • Author(s)
      T.Kawasaki et al.
    • Journal Title

      J.Electron Microsc. 53

      Pages: 271-275

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Annual Research Report 2004 Final Research Report Summary
  • [Journal Article] Acceleration Voltage Dependences of Irradiation Damage and Image Contrast in Transmission Electron Microscopy2004

    • Author(s)
      M.Hayashida et al.
    • Journal Title

      8th Asia-Pacific Conference on Electron Microscopy 1

      Pages: 724-725

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Recent Progress on Dynamic Observation of Movement of Atoms by TEM2004

    • Author(s)
      Y.Takai et al.
    • Journal Title

      8th Asia-Pacific Conference on Electron Microscopy 1

      Pages: 325-326

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Annual Research Report 2004 Final Research Report Summary
  • [Journal Article] Aberration-free Phase Images of DNA observed by Phase Transmission Electron Microscopy2004

    • Author(s)
      Y.Takai et al.
    • Journal Title

      8th Asia-Pacific Conference on Electron Microscopy No.1

      Pages: 276-277

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Practical Method to Determine the Filter Shape Function Used in the Three-Dimensional Fourier Filtering Method2004

    • Author(s)
      T.Kawasaki et al.
    • Journal Title

      J.Electron Microsc. No.53

      Pages: 271-275

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Acceleration Voltage Dependences of Irradiation Damage and Image Contrast in Transmission Electron Microscopy2004

    • Author(s)
      M.Hayashida et al.
    • Journal Title

      8th Asia-Pacific Conference on Electron Microscopy No.1

      Pages: 724-725

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Recent Progress on Dynamic Observation of Movement of Atoms by TEM2004

    • Author(s)
      Y.Takai et al.
    • Journal Title

      8th Asia-Pacific Conference on Electron Microscopy No.1

      Pages: 325-326

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Acceleration Voltage Dependences of Irradiation Damage and image Contrast in Transmission Electron Microscopy2004

    • Author(s)
      M.Hayashida et al.
    • Journal Title

      8th Asia-Pacific Conference on Electron Microscopy 1

      Pages: 724-725

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Phase Transmission Electron Microscopy with Aberration Correction Based on Active Defocus Modulation2003

    • Author(s)
      Y.Takai et al.
    • Journal Title

      4th International Symposium on Atomic Level Characterization for New Material and Deveices '03 1

      Pages: 182-182

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Annual Research Report 2004 Final Research Report Summary
  • [Journal Article] High Resolution Observation of DNA by Phase Transmission Electron Microscopy2003

    • Author(s)
      M.Hayashida et al.
    • Journal Title

      4th International Symposium on Atomic Level Characterization for New Material and Deveices '03 1

      Pages: 137-137

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Annual Research Report 2004 Final Research Report Summary
  • [Journal Article] Phase Reconstruction with Simultaneous Correction of Spherical and Astigmatic Aberrations by Three-Dimensional Fourier Filtering Method2003

    • Author(s)
      T.Kawasaki et al.
    • Journal Title

      Surf.Interface Anal. 35

      Pages: 51-54

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Annual Research Report 2004 Final Research Report Summary
  • [Journal Article] Phase Transmission Electron Microscopy with Aberration Correction Based on Active Defocus Modulation2003

    • Author(s)
      Y.Takai et al.
    • Journal Title

      4th International Symposium on Atomic Level Characterization for New Material and Deveices '03 No.1

      Pages: 182-182

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] High Resolution Observation of DNA by Phase Transmission Electron Microscope2003

    • Author(s)
      M.Hayashida et al.
    • Journal Title

      4th International Symposium on Atomic Level Characterization for New Material and Deveices '03. No.1

      Pages: 137-137

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Phase Reconstruction with Simultaneous Correction of Spherical and Astigmatic Aberrations by Three-Dimensional Fourier Filtering Method2003

    • Author(s)
      T.Kawasaki et al.
    • Journal Title

      Surf.Interface Anal. No.35

      Pages: 51-54

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Publications] T.Kawasaki et al.: "Phase Reconstruction with Simultaneous Correction of Spherical and Astigmatic Aberrations by Three-Dimensional Fourier Filtering Method"Surf.Interface Anal. Vol.35, No.1. 51-54 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] K.Nishikata et al.: "Real-Time Lock-In Imaging by A Newly Developed High-Speed Image-Processing Charge Coupled Device Video Camera"Rev.Sci.Instruments. Vol.74, No.3. 1393-1396 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] K.Nishikata et al.: "Real-Time Lock-In Energy Loss Imaging with A Novel High-Speed Image Processing CCD Video Camera"Surf.Interface Anal. Vol.35, No.2. 282-286 (2003)

    • Related Report
      2003 Annual Research Report

URL: 

Published: 2003-04-01   Modified: 2016-04-21  

Information User Guide FAQ News Terms of Use Attribution of KAKENHI

Powered by NII kakenhi