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Studies on functional domains essential for the retrotransposition of LINE

Research Project

Project/Area Number 15370003
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Genetics/Genome dynamics
Research InstitutionThe University of Tokyo

Principal Investigator

FUJIWARA Haruhiko  The University of Tokyo, Graduate School of Frontier Sciences, Professor, 大学院・新領域創成科学研究科, 教授 (40183933)

Project Period (FY) 2003 – 2005
Project Status Completed (Fiscal Year 2005)
Budget Amount *help
¥11,400,000 (Direct Cost: ¥11,400,000)
Fiscal Year 2005: ¥3,700,000 (Direct Cost: ¥3,700,000)
Fiscal Year 2004: ¥4,400,000 (Direct Cost: ¥4,400,000)
Fiscal Year 2003: ¥3,300,000 (Direct Cost: ¥3,300,000)
Keywordsnon-LTR retrotransposon / LINE / endonuclease / telomere / target specific LINE / reverse transcriptase / rDNA specific LINE / retrotransposition mechanism / 部位特異的レトロトランスポジ / RNP複合体構造 / 28SrDNA / 転移機構 / レトロトランスポジション / SART / ORF1
Research Abstract

During the project term, we clarified the essential domains for the retrotranspositions of LINE, using mainly telomere specific LINE SART1, as shown below (1 to 3, TRAS1 for 4, R1 for 5).
1. We found novel domains NLS and telomere accession signals in ORF1 proteins in SART1 (Matsumoto, T., et al.Mol.Cell Biol. 24,105-122. (2004)).
2. We found eukaryotic translational coupling for the regulation of ORF1 and ORF2 translation in SART1 (Kojima, KK.et al.Mol.Cell.Biol.25, 7675-7686. (2005)).
3. We clarified the 3'UTR structure which is recognized by reversetranscription unit of SART1 (Osanai, M., et al.Mol.Cell Biol.24, 7902-7913. (2004)).
4. Collaborating with Dr.Maita in Kyusyu Univ., we firstly reported the crystal structure of endonuclease domain of TRAS1 (Maita, N., et al.J.Biol.Chem.279, 41067-41076. (2004)).
5.We established the retrotransposion assay system for 28SrDNA specific LINE, R1, which enable us to use several target specific LINE, telomere specific LINEs, SART1 and TRAS1,and rDNA specific R1,for future analysis (Anzai T., et al.Nucleic Acids Res.33, 1993-2002. (2005)).

Report

(4 results)
  • 2005 Annual Research Report   Final Research Report Summary
  • 2004 Annual Research Report
  • 2003 Annual Research Report
  • Research Products

    (53 results)

All 2006 2005 2004 2003 Other

All Journal Article (46 results) Book (1 results) Publications (6 results)

  • [Journal Article] Expression of one isoform of GTP cyclohydrolase I coincides with the larval black markings of the swallowtail butterfly, Papilio xuthus. Insect Biochem.2006

    • Author(s)
      Futahashi, H., Fujiwara, H.
    • Journal Title

      Molec. Biol. 36

      Pages: 63-70

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Essential domains for Ribonucleoprotein complex formation required for retrotransposition of a telomere specific non-LTR retrotransposon SART1.2006

    • Author(s)
      Matsumoto, T., Hamada, M., Osanai, M., Fujiwara,H.
    • Journal Title

      Mol. Cell Biol

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Expression of one isoform of GTP cyclohydrolase I coincides with the larval black markings of the swallowtail butterfly, Papilio xuthus.2006

    • Author(s)
      Futahashi, H., Fujiwara, H.
    • Journal Title

      Insect Biochem. Molec. Biol. 36

      Pages: 63-70

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Essential domains for Ribonucleoprotein complex formation required for retrotransposition of a telomere specific non-LTR retrotransposon SART1.2006

    • Author(s)
      Matsumoto, T., Hamada, M., Osanai, M., Fujiwara, H.
    • Journal Title

      Mol.Cell Biol (in press.)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Identification and characterization of the telomerase reverse transcriptase of Bombyx mori (silkworm) and Tribolium castaneum (flour beetle).2006

    • Author(s)
      Osanai, M., Kojima, K.K., Futahashi, R., Yaguchi, S., Fujiwara, H.
    • Journal Title

      Gene. (in press.)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Functional roles of read-through 28S rRNA sequence in in vivo retrotransposition of non-LTR retrotransposon R1Bm.2005

    • Author(s)
      Anzai T., Osanai, M., Hamada, M., Fujiwara, H.
    • Journal Title

      Nucleic Acids Res 33

      Pages: 1993-2002

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] An extraordinary retrotransposon family encoding dual endonucleases2005

    • Author(s)
      Kojima, K.K., Fujiwara, H.
    • Journal Title

      Genome Research 15

      Pages: 1106-1117

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Melanin-synthesis enzymes co-regulate stage-specific larval cuticular markings in the swallowtail butterfly, Papilio xuthus. Development2005

    • Author(s)
      Futahashi, R., Fujiwara, H.
    • Journal Title

      Development, Genes and Evolution 215

      Pages: 519-529

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Telomere-specific non-LTR retrotransposons and telomere maintenance in the silkworm, Bombyx mori" Chromosome Research2005

    • Author(s)
      Fujiwara, H., Osanai, M., Matsumoto, T., Kojima, K.K.
    • Journal Title

      Chromosome Research 13

      Pages: 455-467

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Eukaryotic translation coupling in UAAUG stop-start codons for the bicystronic RNA translation of non-LTR retrotransposon SART1.2005

    • Author(s)
      Kojima, K.K., Matsumoto, T., Fujiwara, H.
    • Journal Title

      Mol. Cell Biol 25

      Pages: 7675-7686

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Long-term inheritance of the 28S rDNA-specific retrotransposon R22005

    • Author(s)
      Kojima, K.K., Fujiwara, H.
    • Journal Title

      Mol. Biol. Evol. 22

      Pages: 2157-2165

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Functional roles of read-through 28S rRNA sequence in in vivo retrotransposition of non-LTR retrotransposon, R1Bm.2005

    • Author(s)
      Anzai T., Osanai, M., Hamada, M., Fujiwara, H.
    • Journal Title

      Nucleic Acids Res. 33

      Pages: 1993-2002

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Melanin-synthesis enzymes co-regulate stage-specific larval cuticular markings in the swallowtail butterfly, Papilio xuthus.2005

    • Author(s)
      Futahashi, R., Fujiwara, H.
    • Journal Title

      Development, Genes and Evolution 215

      Pages: 519-529

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Annual Research Report 2005 Final Research Report Summary
  • [Journal Article] (Review article) Telomere-specific non-LTR retrotransposons and telomere maintenance in the silkworm, Bombyx mori2005

    • Author(s)
      Fujiwara, H., Osanai, M., Matsumoto, T., Kojima, K.K.
    • Journal Title

      Chromosome Research 13

      Pages: 455-467

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Eukaryotic translation coupling in UAAUG stop-start codons for the bicystronic RNA translation of non-LTR retrotransposon SART1.2005

    • Author(s)
      Kojima, K.K., Matsumoto, T., Fujiwara, H.
    • Journal Title

      Mol.Cell Biol 25

      Pages: 7675-7686

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Long-term inheritance of the 28SrDNA-specific retrotransposon R22005

    • Author(s)
      Kojima, K.K., Fujiwara, H.
    • Journal Title

      Mol.Biol.Evol. 22

      Pages: 2157-2165

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Functional roles of read-through 28S rRNA sequence in in vivo retrotransposition of non-LTR retrotransposon, R1Bm.2005

    • Author(s)
      Anzai T., Osanai, M., Hamada, M., Fuiiwara, H.
    • Journal Title

      Nucleic Acids Res. 33

      Pages: 1993-2002

    • Related Report
      2005 Annual Research Report
  • [Journal Article] An extraordinary retrotransposon family encoding dual endonucleases2005

    • Author(s)
      Kojima, K.K., Fuiiwara, H.
    • Journal Title

      Genome Res. 15

      Pages: 1106-1117

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Telomere-specific non-LTR retrotransposons and telomere maintenance in the silkworm, Bombyx mori2005

    • Author(s)
      Fujiwara, H., Osanai, M., Matsumoto, T., Kojima, K.K.
    • Journal Title

      Chromosome Res 13

      Pages: 455-467

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Eukaryotic translation coupling in UAAUG stop-start codons for the bicystronic RNA translation of non-LTR retrotransposon SART1.2005

    • Author(s)
      Kojima, K.K.Matsumoto, T., Fuiiwara, H.
    • Journal Title

      Mol.Cell.Biol. 25

      Pages: 7675-7686

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Long-term inheritance of the 28S rDNA-specific retrotransposon R22005

    • Author(s)
      Kojima, K.K., H.Fujiwara, H.
    • Journal Title

      Mol.Biol.Evol. 22

      Pages: 2157-2165

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Cross-genome screening of novel sequence-specific non-LTR retrotransposons : various multicopy RNA genes and microsatellites are selected as targets.2004

    • Author(s)
      Kojima, K.K., Fujiwara, H.
    • Journal Title

      Mol. Biol. Evol. 21

      Pages: 207-217

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Targeted nuclear import of ORF1 protein is required for in vivo retrotransposition of telomere-specific non-long terminal repeat retrotransposon, SART1.2004

    • Author(s)
      Matsumoto, T., Takahashi, H., Fujiwara, H.
    • Journal Title

      Mol. Cell. Biol. 24

      Pages: 105-122

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Novel motifs in 3'-untranslated region required for precise reverse transcription start of telomere specific LINE, SART1.2004

    • Author(s)
      Osanai, M., Takahashi, H., Kojima, K.K., Hamada, M., Fujiwara,H.
    • Journal Title

      Mol. Cell. Biol. 24

      Pages: 7902-7913

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Crystal structure of the endonuclease domain encoded by the telomere-specific LINE, TRAS1.2004

    • Author(s)
      Maita, N., Anzai, T., Aoyagi, H., Mizuno, H., Fujiwara,H.
    • Journal Title

      J. Biol. Chem 279

      Pages: 41067-41076

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] 昆虫のテロメア維持機構2004

    • Author(s)
      小島健司, 藤原晴彦
    • Journal Title

      放射線生物研究 39

      Pages: 39-50

    • NAID

      40006155051

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] テロメア特異的LINEの転移メカニズムと適応戦略2004

    • Author(s)
      藤原晴彦
    • Journal Title

      タンパク質核酸酵素 49

      Pages: 2090-2096

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Cross-genome screening of novel sequence-specific non-LTR retrotransposons : various multicopy RNA genes and microsatellites are selected as targets.2004

    • Author(s)
      Kojima, K.K., Fujiwara, H.
    • Journal Title

      Mol.Biol.Evol. 21

      Pages: 207-217

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Targeted nuclear import of ORF1 protein is required for in vivo retrotransposition of telomere-specific non-long terminal repeat retrotransposon, SART1.2004

    • Author(s)
      Matsumoto, T., Takahashi H., Fujiwara, H.
    • Journal Title

      Mol.Cell Biol. 24

      Pages: 105-122

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Novel motifs in 3'-untranslated region required for precise reverse transcription start of telomere specific LINE, SART1.2004

    • Author(s)
      Osanai, M., Takahashi, H., Kojima, K.K., Hamada, M., Fujiwara, H.
    • Journal Title

      Mol.Cell Biol. 24

      Pages: 7902-7913

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Crystal structure of the endonuclease domain encoded by the telomere-specific LINE, TRAS1.2004

    • Author(s)
      Maita, N., Anzai, T., Aoyagi, H., Mizuno, H., Fujiwara, H.
    • Journal Title

      J.Biol.Chem 279

      Pages: 41067-41076

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Telomere maintenance in insects. (in Japanese)2004

    • Author(s)
      Kojima, K.K., Fujiwara, H.
    • Journal Title

      Houshasen Seibutsu Kenkyu. 39

      Pages: 39-50

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Adaptive strategy and netrotransposition mechanism for telomerespecific Line. (in Japanese)2004

    • Author(s)
      Fujiwara, H.
    • Journal Title

      Tanpakushitsu Kakusan Koso. 49

      Pages: 2090-2096

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Novel motifs in 3'-untranslated region required for precise reverse transcription start of telomere specific LINE.SART12004

    • Author(s)
      Osanai, M., Takahashi, H., Kojima, K.K., Hamada, M., Fuiiwara, H.
    • Journal Title

      Molecular and Cellular Biology 24

      Pages: 7902-7913

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Crystal structure of the endonuclease domain encoded by the telomere specific LINE.TRAS12004

    • Author(s)
      Maita, N., Anzai, T., Aoyagi, H., Mizuno, H., Fujiwara, H.
    • Journal Title

      Journal of Biological Chemistry 279

      Pages: 41067-41076

    • Related Report
      2004 Annual Research Report
  • [Journal Article] テロメア特異的LINEの転移メカニズムと適応戦略2004

    • Author(s)
      藤原晴彦
    • Journal Title

      蛋白質・核酸・酵素 49

      Pages: 2090-2096

    • Related Report
      2004 Annual Research Report
  • [Journal Article] 染色体の端に共生するもの-昆虫の特異なテロメア構造2004

    • Author(s)
      藤原晴彦
    • Journal Title

      現代化学 399

      Pages: 41-46

    • Related Report
      2004 Annual Research Report
  • [Journal Article] 変身する昆虫-ホルモンによる適応戦略2004

    • Author(s)
      藤原晴彦
    • Journal Title

      現代化学 401

      Pages: 27-31

    • Related Report
      2004 Annual Research Report
  • [Journal Article] 昆虫を彩る色と模様-擬態紋様の謎2004

    • Author(s)
      二橋亮, 藤原晴彦
    • Journal Title

      現代化学 403

      Pages: 55-60

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Evolution of target specificity in R1 clade non-LTR retrotransposons.2003

    • Author(s)
      Kojima, K.K., Fujiwara, H.
    • Journal Title

      Mol. Biol. Evol 20

      Pages: 351-361

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Female-specific wing degeneration caused by ecdysteroid in the tussock moth, Orgyia recens : Hormonal and developmental regulation of sexual dimorphism formation.2003

    • Author(s)
      Lobbia, S., Niitsu, K., Fujiwara,H
    • Journal Title

      J. Insect Science 3:11

      Pages: 1-7

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] cDNA cloning and mRNA expression of L-3,4-dihydroxyphenylalanine decarboxylase gene homologue from the silkworm, Bombyx mori.2003

    • Author(s)
      Hwang JS, Kang SW, Goo TW, Yun EY, Lee JS, Kwon OY, Chun T, Suzuki Y, Fujiwara H.
    • Journal Title

      Biotechnol Lett. 25(12)

      Pages: 997-1002

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Evolution of target specificity in R1 clade non-LTR retrotransposons.2003

    • Author(s)
      Kojima, K.K., Fujiwara, H.
    • Journal Title

      Mol.Biol.Evol 20

      Pages: 351-361

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Female-specific wing degeneration caused by ecdysteroid in the tussock moth, Orgyia recens : Hormonal and developmental regulation of sexual dimorphism formation.2003

    • Author(s)
      Lobbia, S., Niitsu, K., Fujiwara, H
    • Journal Title

      J.Insect Science (insectscience.org/3.11) 3 : 11 (on line journal).

      Pages: 1-7

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] cDNA cloning and mRNA expression of L-3, 4-dihydroxyphenylalanine decarboxylase gene homologue from the silkworm, Bombyx mori.2003

    • Author(s)
      Hwang JS, Kang SW, Goo TW, Yun EY, Lee JS, Kwon OY, Chun T, Suzuki Y, Fujiwara H.
    • Journal Title

      Biotechnol Lett. 25 (12)

      Pages: 997-1002

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Identification and characterization of the telomerase reverse transcriptase of Bombyx mori (silkworm) and Tribolium castaneum (flour beetle).

    • Author(s)
      Osanai, M., Kojima, K.K., Futahashi, R., Yaguchi, S., Fujiwara,H.
    • Journal Title

      Gene.

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Book] 放送大学教材「分子生物学]分担執筆 第2,6,7章、2005

    • Author(s)
      藤原晴彦
    • Total Pages
      197
    • Publisher
      放送大学教育振興会
    • Related Report
      2005 Annual Research Report
  • [Publications] 小島健司, 藤原晴彦: "昆虫のテロメア維持機構"放射線生物研究. 39. 39-50 (2004)

    • Related Report
      2003 Annual Research Report
  • [Publications] Matsumoto, T., Takahashi, H., Fujiwara, H.: "Targeted nuclear import of ORF1 protein is required for in vivo retrotransposition on telomere-specific non-long terminal repeat retrotransposon, SART1."Mol.Cell.Biol.. 24. 105-122 (2004)

    • Related Report
      2003 Annual Research Report
  • [Publications] Kojima, K.K., Fujiwara, H.: "Cross-genome screening of novel sequence-specific non-LTR retrotransposons : various multicopy RNA genes and microsatellites are selected as targets."Mol.Biol.Evol.. 21. 207-217 (2004)

    • Related Report
      2003 Annual Research Report
  • [Publications] Kojima, K.K., Fujiwara, H.: "Evolution of target specificity in R1 clade not-LTR retrotransposons."Mol.Biol.Evol.. 20. 351-361 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Lobbia, S., Niitsu, K., Fujiwara, H.: "Female-specific wing degeneration caused by ecdysteroid in the tussock moth, Orgyiarecens : Hormonal and developmental regulation of sexual dimorphism formation."J.Insect Science. 3. 1-7 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Hwang JS, et al.: "cDNA cloning and mRNA expression of L-3,4-dihydroxyphyenylalanine decarboxylase gene homologue from the silkworm, Bombryx mori."Biotechnol Lett.. 25. 997-1002 (2003)

    • Related Report
      2003 Annual Research Report

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Published: 2003-04-01   Modified: 2016-04-21  

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