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Molecular mechanism for circadian clock molecular machinery at the stomic level

Research Project

Project/Area Number 15370004
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Genetics/Genome dynamics
Research InstitutionNagoya University

Principal Investigator

ISHIURA Masahiro  Nagoya University, Center for Gene research, Professor, 遺伝子実験施設, 教授 (20132730)

Co-Investigator(Kenkyū-buntansha) SUGIYAMA Yasuo  Nagoya University, Center for Gene research, Associate Professor, 遺伝子実験施設, 助教授 (70154507)
IHARA Kunio  Nagoya University, Center for Gene research, Research Associate, 遺伝子実験施設, 助手 (90223297)
九町 健一  名古屋大学, 大学院・生命農学研究科, 学術振興会研究員
NAMBA Keiichi  Osaka. University, Graduate School of Frontier Bioscience, Professor, 大学院・生命機能研究科, 教授 (30346142)
KATO Hiroaki  Kyoto University, Graduate School of Pharmacology, Professor, 大学院・薬学研究科, 教授 (90204487)
KUCHO Kenich  Nagoya University, Graduate School of Agricultural Science, Postdoctoral fellow
Project Period (FY) 2003 – 2004
Project Status Completed (Fiscal Year 2004)
Budget Amount *help
¥15,600,000 (Direct Cost: ¥15,600,000)
Fiscal Year 2004: ¥3,700,000 (Direct Cost: ¥3,700,000)
Fiscal Year 2003: ¥11,900,000 (Direct Cost: ¥11,900,000)
KeywordsBiological clock / Molecular machinery / Cyanobacteria / Clock proteins / Clock genes / Arabidopsis / Bioluminescence / Real-time monitoring / 藍色細菌 / KaiC / 六量体 / リン酸化 / 相互作用 / DNAマイクロアレイ / 発光レポーター遺伝子 / X線結晶構造解析
Research Abstract

The cyanobacteria clock machinery is composed of three Kai proteins, KaiA, KaiC, and KaiC. We found that KaiC forms hexmers in the presence of ATP and clarified the three-dimensional structure of KaiC hexamer by electron microscopic observation followed by single particle analysis. We determined the stoichiomertic interactions between KaiA and KaiC. We determined the crystal structure of the C-terminal clock oscillator domain of KaiC and identified His270 as a functional residue. Based on the structure, we demonstrated the structure-function relationships of KaiA. We determined the different roles of the two domains, N-terminal and C-terminal domains, of KaiC.

Report

(3 results)
  • 2004 Annual Research Report   Final Research Report Summary
  • 2003 Annual Research Report
  • Research Products

    (53 results)

All 2005 2004 2003 Other

All Journal Article (44 results) Patent(Industrial Property Rights) (4 results) Publications (5 results)

  • [Journal Article] A portable integrated automatic apparatus for the real-time monitoring of bioluminescence in plants.2005

    • Author(s)
      Okamoto, K. et al.
    • Journal Title

      Plant Cell Environ (in press)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Identification of novel clock-regulated genes by cDNA macroarray analysis in Chlamydomonas reinhardtii2005

    • Author(s)
      Kucho, K. et al.
    • Journal Title

      Plant Mol.Biol (in press)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Improvement of the bioluminescent reporter system for real-time monitoring of circadian rhythms in the cyanobacterium Synechocystis sp. Strain PPC68032005

    • Author(s)
      Kucho, K. et al.
    • Journal Title

      Genes Genet.Syst 80

      Pages: 19-23

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] An automated apparatus for the real-time monitoring of bioluminescence in plants.2005

    • Author(s)
      Okamoto, K. et al.
    • Journal Title

      Anal.Biochem. 340

      Pages: 187-192

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] RAP, an integrated program for monitoring bioluminescence and analyzing circadian rhythms in real time.2005

    • Author(s)
      Okamoto, K. et al.
    • Journal Title

      Anal.Biochem 340

      Pages: 193-200

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Global analysis of circadian expression in the cyanobacterium Synechocystis sp. strain PCC 68032005

    • Author(s)
      Kucho, K. et al.
    • Journal Title

      J.Bacteriol. 187

      Pages: 2190-2199

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] A portable integrated automatic apparatus for the real-time monitoring of bioluminescence in plants.2005

    • Author(s)
      Okamoto, K., Onai, K., Furusawa, T., Ishiura.M.
    • Journal Title

      Plant Cell Environ. (in press)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Identification of novel clock-regulated genes by cDNA macroarray analysis in Chlamydomonas reinhardtii.2005

    • Author(s)
      Kucho, K., Okamoto, K., Tabata, S., Fukuzawa, H., Ishiura.M.
    • Journal Title

      Plant Mol.Biol. (in press)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Improvement of the bioluminescent reporter system for real-time monitoring of circadian rhythms hi the cyanobacterium Synechocystis sp.strain PCC 6803.2005

    • Author(s)
      Kucho, K., Aoki, K., Itoh, S., Ishiura, M.
    • Journal Title

      Genes Genet.Syst. 80

      Pages: 19-23

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] An automated apparatus for the real-time monitoring of bioluminescence in plants.2005

    • Author(s)
      Okamoto, K., Onai, K., Ezaki, N., Ofuchi, T., Ishiura.M.
    • Journal Title

      Anal.Biochem. 340

      Pages: 187-192

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] RAP, an integrated program for monitoring bioluminescence and analyzing circadian rhythms in real time.2005

    • Author(s)
      Okamoto, K., Onai, K., Ishiura, M.
    • Journal Title

      Anal.Biochem. 340

      Pages: 193-200

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Global analysis of circadian expression in the cyanobacterium Synechocystis sp.strain PCC 6803.2005

    • Author(s)
      Kucho, K., Okamoto, K., Tsuchiya, Y., Nomura, S., Nango, M., Kanehisa, M., Ishiura, M.
    • Journal Title

      J.Bacteriol. 187

      Pages: 2190-2199

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Global Analysis of Circadian Expression in the cyanobacterium Synechocystis sp.strain PCC 6803.2005

    • Author(s)
      Kucho, K., Okamoto, K., Tsuchiya, Y., Nomura, S., Nango, M., Kanehisa, M., Ishiura, M.
    • Journal Title

      J.Bacteriol. 187

      Pages: 2190-2199

    • Related Report
      2004 Annual Research Report
  • [Journal Article] 生物時計装置を原子レベルで解明する2005

    • Author(s)
      宇津巻竜也, 林史夫, 石浦正寛
    • Journal Title

      蛋白質・核酸・酵素 50

      Pages: 111-120

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Construction of unmodified oligonucleotide-based microarray in the thermophilic cyanobacterium Thermosynechococcus elongatus BP-1.2004

    • Author(s)
      Kucho, K.et al.
    • Journal Title

      Genes Genet.Syst. 79

      Pages: 319-329

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Roles of two ATPase-motif-containing domains in cyanobacterial circadian clock protein KaiC.2004

    • Author(s)
      Hayashi, F. et al.
    • Journal Title

      J.Biol.Chem. 279

      Pages: 52331-52337

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Determinants of sensitivity and specificity in spotted DNA microarrays with unmodified oligonucleotides.2004

    • Author(s)
      Kucho, K. et al.
    • Journal Title

      Genes Genet.Syst. 79

      Pages: 189-197

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Large-scale screening of Arabidopsis circadian clock mutants by a high-throughput real-time bioluminescence monitoring system.2004

    • Author(s)
      Onai, K. et al.
    • Journal Title

      Plant J. 40

      Pages: 1-11

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Circadian rhythms in the thermophilic cyanobacterium Thermosynechococcus elongatus : compensation of period length over a wide temperature range.2004

    • Author(s)
      Onai, K. et al.
    • Journal Title

      J.Bacteriol. 186

      Pages: 4972-4977

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Crystal structure of the C-terminal clock-oscillator domain of the cyanobacterial KaiA protein.2004

    • Author(s)
      Uzumaki, T. et al.
    • Journal Title

      Nature Struct.Mol.Biol. 11

      Pages: 623-631

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Crystallization and preliminary crystallographic analysis of the circadian clock protein KaiB from the thermophilic cyanobacterium Thermosynechococcus elongatus BP-1.2004

    • Author(s)
      Iwase, R. et al.
    • Journal Title

      Acta Cryst.D 60

      Pages: 727-729

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Stoichiometric interactions between cyanobacterial clock proteins KaiA and KaiC.2004

    • Author(s)
      Hayashi, F. et al.
    • Journal Title

      Biochem.Biophys.Res.Commun. 316

      Pages: 195-202

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Natural transformation of the thermophilic cyanobacterium Thermosynechococcus elongatus BP-1 : a simple and efficient method for gene transfer.2004

    • Author(s)
      Onai, K. et al.
    • Journal Title

      Mol.Genet.Genomics 271

      Pages: 50-59

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Construction of unmodified oligonucleotide-based microarray in the thermophilic cyanobacterium Thermosynechococcus elongatus BP-1.2004

    • Author(s)
      Kucho, K., Tsuchiya, Y., Okumoto, Y., Harada, M., Yamada, M., Ishiura.M.
    • Journal Title

      Genes Genet.Syst. 79

      Pages: 319-329

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Roles of two ATPase-motif-containing domains in cyanobacterial circadian clock protein KaiC.2004

    • Author(s)
      Hayashi, F., Ito, N., Uzumaki, T., Iwase, R., Tsuchiya, Y., Yamakawa, H., Morishita, M., Onai, K., Itoh, S., Ishiura, M.
    • Journal Title

      J.Biol.Chem. 279

      Pages: 52331-52337

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Annual Research Report 2004 Final Research Report Summary
  • [Journal Article] Determinants of sensitivity and specificity in spotted DNA microarrays with unmodified oligonucleotides.2004

    • Author(s)
      Kucho, K., Yoneda, H., Harada, M., Ishiura, M.
    • Journal Title

      Genes Genet.Syst. 79

      Pages: 189-197

    • NAID

      10014154547

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Annual Research Report 2004 Final Research Report Summary
  • [Journal Article] Large-scale screening of Arabidopsis circadian clock mutants by a high-throughput real-time bioluminescence monitoring system.2004

    • Author(s)
      Onai, K., Okamoto, K., Nishimoto, H., Morioka, C., Hirano, M., Kami-ike, N., Ishiura, M.
    • Journal Title

      Plant J. 40

      Pages: 1-11

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Annual Research Report 2004 Final Research Report Summary
  • [Journal Article] Circadian rhythms in the thermophilic cyanobacterium Thermosynechococcus elongatus : compensation of period length over a wide temperature range.2004

    • Author(s)
      Onai, K., Morishita, M., Itoh, S., Okamoto, K., Ishiura, M.
    • Journal Title

      J.Bacteriol. 186

      Pages: 4972-4977

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Annual Research Report 2004 Final Research Report Summary
  • [Journal Article] Crystal structure of the C-terminal clock-oscillator domain of the cyanobacterial KaiA protein.2004

    • Author(s)
      Uzumaki, T., Fujita, M., Nakatsu, T., Hayashi, F., Shibata, H., Itoh, N., Kato, H., Ishiura, M.
    • Journal Title

      Nature Struct.Mol.Biol. 11

      Pages: 623-631

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Annual Research Report 2004 Final Research Report Summary
  • [Journal Article] Crystallization and preliminary crystallographic analysis of the circadian clock protein KaiB from the thermophilic cyanobacterium Thermosynechococcus elongatus BP-1.2004

    • Author(s)
      Iwase, R., Imada, K., Hayashi, F., Uzumaki, T., Namba, K., Ishiura.M.
    • Journal Title

      Acta Cryst.D 60

      Pages: 727-729

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Stoichiometric interactions between cyanobacterial clock proteins KaiA and KaiC.2004

    • Author(s)
      Hayashi, F., Ito, H., Fujita, M., Iwase, R., Uzumaki, T., Ishiura.M.
    • Journal Title

      Biochem.Biophys.Res.Commun. 316

      Pages: 195-202

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Natural transformation of the thermophilic cyanobacterium Thermosynechococcus elongatus BP-1 : a simple and efficient method for gene transfer.2004

    • Author(s)
      Onai, K., Morishita, M., Kaneko, T., Tabata, S., Ishiura, M.
    • Journal Title

      Mol.Genet.Genomics 271

      Pages: 50-59

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Construction of unmodified oligonucleotide-based microarray in the thermophilic cyanobacterium Thermosynechococcus elongatus BP-1.2004

    • Author(s)
      Kucho, K., Tsuchiya, Y., Okumoto, Y., Harada, M., Yamada, M., Ishiura, M.
    • Journal Title

      Genes Genet.Syst. 79

      Pages: 319-329

    • Related Report
      2004 Annual Research Report
  • [Journal Article] 分子装置としての生物時計2004

    • Author(s)
      石浦正寛
    • Journal Title

      名大トピックス 139

      Pages: 34-35

    • Related Report
      2004 Annual Research Report
  • [Journal Article] 藍色細菌の時計タンパク質KaiAの構造と機能機能ドメイン、X線結晶構造解析及び構造-機能能相関の解明2004

    • Author(s)
      宇津巻竜也, 中津亨, 加藤博章, 石浦正寛
    • Journal Title

      Spring-8 Information 9

      Pages: 367-371

    • Related Report
      2004 Annual Research Report
  • [Journal Article] 藍色細菌の時計タンパク質KaiAの原子構造と時計機能2004

    • Author(s)
      宇津巻竜也, 石浦正寛
    • Journal Title

      ブレインテクノニュース 105

      Pages: 25-29

    • Related Report
      2004 Annual Research Report
  • [Journal Article] ATP-induced hexameric ring structure of the cyanobacterial circadian clock protein KaiC.2003

    • Author(s)
      Hayashi, F.et al.
    • Journal Title

      Genes Cells 8

      Pages: 287-296

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Identification of a new cryptochrome class : structure, function, and evolution.2003

    • Author(s)
      Brudler, R. et al.
    • Journal Title

      Mol.Cell 11

      Pages: 59-67

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] ATP-induced hexameric ring structure of the cyanobacterial circadian clock protein KaiC.2003

    • Author(s)
      Hayashi, F., Suzuki, H., Iwase, R., Uzumaki, T., Miyake, A., Shen, J.-R., Imada, K., Furukawa, Y., Yonekura, K., Namba, K., Ishiura, M.
    • Journal Title

      Genes Cells 8

      Pages: 287-296

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Identification of a new cryptochrome class : structure, function, and evolution.2003

    • Author(s)
      Brudler, R., Hitomi, K., Daiyasu, H., Toh, H., Kucho, K., Ishiura, M., Kanehisa, M., Roberts, V.A., Todo, T., Tainer, J.A., Getzoff, E.D.
    • Journal Title

      Mol.Cell 11

      Pages: 59-67

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Identification of novel clock-regulated genes by cDNA macroarray analysis in Chlamydomonas reihardtii

    • Author(s)
      Kucho, K., Okamoto, K., Tabata, S., Fukuzawa, H., Ishiura, M.
    • Journal Title

      Plant Mol.Biol. (印刷中)

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Improvement of the bioluminescent reporter system for real-time monitoring of circadian rhythms in the cyanobacterium Synechocystis sp.strain PCC 6803

    • Author(s)
      Kucho, K., Aoki, K., Itoh, S., Ishiura, M.
    • Journal Title

      Genes Genet.Syst. (印刷中)

    • Related Report
      2004 Annual Research Report
  • [Journal Article] An automated apparatus for the real-time monitoring of bioluminescence in plants

    • Author(s)
      Okamoto, K., Onai, K., Ezaki, N., Ofuchi, T., Ishiura, M.
    • Journal Title

      Anal Biochem. (印刷中)

    • Related Report
      2004 Annual Research Report
  • [Journal Article] RAP, an integrated program for monitoring bioluminescence and analyzing circadian rhythms in real time.

    • Author(s)
      Okamoto, K., Onai, K., Ishiura, M.
    • Journal Title

      Anal Biochem. (印刷中)

    • Related Report
      2004 Annual Research Report
  • [Patent(Industrial Property Rights)] 葉緑体で機能するホタルルシフェラーゼ遺伝子とそれを用いた葉緑体遺伝子発現のリアルタイムモニタリング2005

    • Inventor(s)
      石浦 正寛, 松尾 拓也, 小内 清
    • Industrial Property Rights Holder
      国立大学法人名古屋大学
    • Industrial Property Number
      2005-029217
    • Filing Date
      2005-02-04
    • Related Report
      2004 Annual Research Report
  • [Patent(Industrial Property Rights)] DNAアレイ法の時系列データとデータ中に含まれるリズム成分とを解析するためのプログラム2004

    • Inventor(s)
      石浦 正寛, 岡本 和久
    • Industrial Property Rights Holder
      名古屋大学総長
    • Industrial Property Number
      2004-053743
    • Filing Date
      2004-02-27
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Patent(Industrial Property Rights)] 制御プログラム及び培養装置2004

    • Inventor(s)
      石浦 正寛, 岡本 和久
    • Industrial Property Rights Holder
      国立大学法人名古屋大学
    • Industrial Property Number
      2004-380651
    • Filing Date
      2004-12-28
    • Related Report
      2004 Annual Research Report
  • [Patent(Industrial Property Rights)] 生物試料の生物発光測定装置2003

    • Inventor(s)
      石浦 正寛, 岡本 和久, 小内 清, 古澤 孝良
    • Industrial Property Rights Holder
      名古屋大学総長
    • Industrial Property Number
      2003-384577
    • Filing Date
      2003-11-14
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Publications] Onai K.et al.: "Natural transformation of the thermophilic cyanobacterium Thermosynechococcus elongatus BP-1 : a simple and efficient method for gene transfer"Mol.Genet.Genomics. 271. 50-59 (2004)

    • Related Report
      2003 Annual Research Report
  • [Publications] Hayashi F.et al.: "Stoichiometric interactions between cyanobacterial clock proteins KaiA and KaiC and enhancement of KaiC phosphorylation"Biochem.Biophy.Res.Comm.. 361. 195-202 (2004)

    • Related Report
      2003 Annual Research Report
  • [Publications] Iwase R.et al.: "Crystalization and preliminary crystallographic analysis of the circadian clock protein KaiB from the thermophillic cyanobacterium Thermosynechococcus elongatus BP-1"Acta.Crysta.. (印刷中). (2004)

    • Related Report
      2003 Annual Research Report
  • [Publications] Burder R.et al.: "Identification of a new cryptochrome class : structure, function and evolution"Mol.Cell. 11. 59-67 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Hayashi F.et al.: "ATP-induced hexameric ring structure of the cyanobacterial circadian clock protein KaiC"Genes to Cells. 8. 287-296 (2003)

    • Related Report
      2003 Annual Research Report

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Published: 2003-04-01   Modified: 2016-04-21  

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