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Molecular study on large conformational changes of protein that relates biofunction and diseases

Research Project

Project/Area Number 15370047
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Structural biochemistry
Research InstitutionTottori University

Principal Investigator

KAWATA Yasushi  Tottori University, Faculty of Engineering, Professor, 工学部, 教授 (40177697)

Co-Investigator(Kenkyū-buntansha) MIZOBATA Tomohiro  Tottori University, Faculty of Engineering, Associate Professor, 工学部, 助教授 (50263489)
HONGO Kunihiro  Tottori University, Faculty of Engineering, Associate Professor, 工学部, 助手 (80335504)
Project Period (FY) 2003 – 2005
Project Status Completed (Fiscal Year 2005)
Budget Amount *help
¥13,000,000 (Direct Cost: ¥13,000,000)
Fiscal Year 2005: ¥2,400,000 (Direct Cost: ¥2,400,000)
Fiscal Year 2004: ¥3,100,000 (Direct Cost: ¥3,100,000)
Fiscal Year 2003: ¥7,500,000 (Direct Cost: ¥7,500,000)
KeywordsAmyloid fibril / Oligomeric protein / α-synuclein / Molecular chaperone / Molecular compactness / Functional mechanism / Chaperonin / Neurodegenerative disease / GroES / コンフォメーション病 / 構造変化 / 構造安定性 / 蛋白質の構造安定性 / コンフォメーション変化 / アミロイド線維形成 / シャペロニンGroES
Research Abstract

Studies on protein stability including global conformational changes and functional mechanism of molecular chaperone, which are closely related to biofunction and diseases, were performed in detail and following results were obtained.
1.Study on structure and stability of oligomeric protein : We have determined X-ray crystal structure of thermostable aspartase enzyme, and elucidated the mechanism of thermostability and active site structure of the enzyme comprising from 4 identical subunits. On the other hand, we studied solution structure and molecular unfolding mechanism of E.coli co-chaperonin GroES heptamer at high protein concentrations by using small angle X-ray scattering.
2.Study on conformational changes and amyloid fibril formation of protein : We have found that oligomeric protein GroES, that is a non-related protein to disease, formed a typical amyloid fibril under a certain condition, and elucidated the fibril formation mechanism in terms of molecular compactness. Furthermore, we studied fibril formation mechanism of α-synuclein, a causative protein of Parkinson disease, and proved that the amyloid fibril formation of α-synuclein is accelerated markedly in the presence of preformed seeds of other different protein's fibrils.
3.Study on structure and function of molecular chaperone : We have studied in detail structure and function relationship of group I chaperonin GroEL from E.coli and group II chaperonins from hyper-thermostable strains. We have found that domain movements of GroEL are very important for the function and that cobalt and manganese ions are novel factors for nucleotide hydrolysis activity and substrate refolding function of group II chaperonin. Furthermore, we have investigated function of zebrafish Hsp60, and elucidated that Hsp60 is required for blastema formation and maintenance during regeneration.

Report

(4 results)
  • 2005 Annual Research Report   Final Research Report Summary
  • 2004 Annual Research Report
  • 2003 Annual Research Report
  • Research Products

    (28 results)

All 2006 2005 2004 2003 Other

All Journal Article (19 results) Book (3 results) Publications (6 results)

  • [Journal Article] A Novel ATP/ADP Hydrolysis Activity of Hyperthermostable Group II Chaperonin in the Presence of Cobalt or Manganese Ion2006

    • Author(s)
      Kunihiro Hongo et al.
    • Journal Title

      FEBS Letters 580

      Pages: 34-40

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Annual Research Report 2005 Final Research Report Summary
  • [Journal Article] A Novel ATP/ADP Hydrolysis Activity of Hyperthermostable Group II Chaperonin in the Presence of Cobalt or Manganese Ion2006

    • Author(s)
      Kunihiro Hongo, Hidenori Hirai, Chisato Uemura, Shujiro Ono, Junjiro Tsunemi, Takashi Higurashi, Tomohiro Mizobata, Yasushi Kawata
    • Journal Title

      FEBS Letters 580

      Pages: 34-40

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Amyloid-like Fibril Formation of Co-chaperonin GroES : Nucleation and Extension Prefer Different Degrees of Molecular Compactness2005

    • Author(s)
      Takashi Higurashi, Hisashi Yagi, Tomohiro Mizobata, Yasushi Kawata
    • Journal Title

      J. Mol. Biol. 351・5

      Pages: 1057-1069

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Amyloid Fibril Formation of a-Synuclein is Accelerated by Preformed Amyloid Seeds of Other Proteins : Implications for the Mechanism of Transmissible Conformational Diseases2005

    • Author(s)
      Hisashi Yagi, Eiko Kusaka, Kunihiro Hongo, Tomohiro Mizobana, Yasushi Kawata
    • Journal Title

      J. Biol. Chem. 280・46

      Pages: 38609-38616

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Amyloid-like Fibril Formation of Co-chaperonin GroES : Nucleation and Extension Prefer Different Degrees of Molecular Compactness2005

    • Author(s)
      Takashi Higurashi, Hisashi Yagi, Tomohiro Mizobata, Yasushi Kawata
    • Journal Title

      Journal of Molecular Biology 351(5)

      Pages: 1057-1069

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Amyloid Fibril Formation of a-Synuclein is Accelerated by Preformed Amyloid Seeds of Other Proteins : Implications for the Mechanism of Transmissible Conformational Diseases2005

    • Author(s)
      Hisashi Yagi, Eiko Kusaka, Kunihiro Hongo, Tomohiro Mizobata, Yasushi Kawata
    • Journal Title

      Journal of Biological Chemistry 280(46)

      Pages: 38609-38616

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Amyloid-like Fibril Formation of Co-chaperonin GroES : Nucleation and Extension Prefer Different Degrees of Molecular Compactness2005

    • Author(s)
      Takashi Higurashi, Hisashi Yagi, Tomohiro Mizobata, Yasushi Kawata
    • Journal Title

      Journal of Molecular Biology 351・5

      Pages: 1057-1069

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Amyloid Fibril Formation of a-Synuclein is Accelerated by Preformed Amyloid Seeds of Other Proteins : Implications for the Mechanism of Transmissible Conformational Diseases2005

    • Author(s)
      Hisashi Yagi, Eiko Kusaka, Kunihiro Hongo, Tomohiro Mizobata, Yasushi Kawata
    • Journal Title

      Journal of Biological Chemistry 280・46

      Pages: 38609-38616

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Hsp60 is Required for Blastema Formation and Maintenance during Regeneration2005

    • Author(s)
      Shinji Makino, Geoffrey G.Whitehead, Ching-Ling Lien, Akane Kono, Yasushi Kawata, Mark T.Keating
    • Journal Title

      Proc.Natl.Acad.Sci.USA 102・41

      Pages: 14599-14604

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Stopped-Flow Fluorescence Analysis of the Conformational Changes in the GroEL Apical Domain : Relationships between Movements in the Apical Domain and the Quaternary Structure of GroEL2004

    • Author(s)
      Masaaki Taniguchi, et al.
    • Journal Title

      J. Biol. Chem. 279・16

      Pages: 16368-16376

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Stopped-Flow Fluorescence Analysis of the Conformational Changes in the GroEL Apical Domain : Relationships between Movements in the Apical Domain and the Quaternary Structure of GroEL2004

    • Author(s)
      Masaaki Taniguchi, Tatsunari Yoshimi, Kunihiro Hongo, Tomohiro Mizobata, Yasushi Kawata
    • Journal Title

      Journal of Biological Chemistry 279(16)

      Pages: 16368-16376

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Stopped-flow fluorescence analysis of the conformational changes in the GroEL apical domain : Relationships between movements in the apical domain and the quaternary structure of GroEL2004

    • Author(s)
      M.Taniguchi et al.
    • Journal Title

      J.Biol.Chem. 279

      Pages: 16368-16376

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Induction of AApoAII amyloidosis by various heterogenous amyloid fibrils2004

    • Author(s)
      X.Fu et al.
    • Journal Title

      FEBS Letters 563

      Pages: 179-184

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Structural Stability of Oligomeric Chaperonin 10 : the Role of Two β-Strands at the N and C Termini in Structural Stabilization2004

    • Author(s)
      I.Sakane et al.
    • Journal Title

      J.Mol.Biol. 344・4

      Pages: 1123-1133

    • Related Report
      2004 Annual Research Report
  • [Journal Article] シャペロニンGroELの作用機構2004

    • Author(s)
      河田康志 ら
    • Journal Title

      蛋白質 核酸 酵素 49

      Pages: 847-852

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Crystal Structure of Thermostable Aspartase from Bacillus sp. YM55-1 : Structure-based Exploration of Functional Sites in the Aspartase Family2003

    • Author(s)
      Tomomi Fujii, Hisanobu Sakai, Yasushi Kawata, Yasuo Hata
    • Journal Title

      J. Mol. Biol. 328・3

      Pages: 635-654

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Structural Stability and Solution Structure of Chaperonin GroES Heptamer Studied by Synchrotron Small-Angle X-Ray Scattering2003

    • Author(s)
      Takashi Higurashi, et al.
    • Journal Title

      J. Mol. Biol. 333・3

      Pages: 605-620

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Crystal Structure of Thermostable Aspartase from Bacillus sp.YM55-1 : Structure-based Exploration of Functional Sites in the Aspartase Family2003

    • Author(s)
      Tomomi Fujii, Hisanobu Sakai, Yasushi Kawata, Yasuo Hata
    • Journal Title

      Journal of Molecular Biology 328(3)

      Pages: 635-654

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Structural Stability and Solution Structure of Chaperonin GroES Heptamer Studied by Synchrotron Small-Angle X-Ray Scattering2003

    • Author(s)
      Takashi Higurashi, Yuzuru Hiragi, Kaoru Ichimura, Yasutaka Seki, Kunitsugu Soda, Tomohiro Mizobata, Yasushi Kawata
    • Journal Title

      Journal of Molecular Biology 333(3)

      Pages: 605-620

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Book] タンパク質工学2004

    • Author(s)
      加藤昭夫, 内海成, 内海俊彦, 河田康志, 山縣ゆり子, 山岸明彦, 山田守, 吉川正明
    • Total Pages
      305
    • Publisher
      医学出版
    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Book] Protein Engineering (Ed.By Akio Kato)2004

    • Author(s)
      Akio Kato, Shigeru Utsumi, Toshihiko Utsumi, Yasushi Kawata, Yuriko Yamagata, Akihiko Yamagishi, Masaaki Yoshikawa
    • Total Pages
      305
    • Publisher
      Igakushuppan Co.
    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Book] タンパク質工学(加藤昭夫編集)2004

    • Author(s)
      河田康志
    • Publisher
      医学出版
    • Related Report
      2004 Annual Research Report
  • [Publications] M.Taniguchi et al.: "Stopped-Flow Fluorescence Analysis of the Conformational Changes in the GroEL Apical Domain : Relationships between Movements in the Apical Domain and the Quaternary Structure of GroEL"Journal of Biological Chemistry. (印刷中). (2004)

    • Related Report
      2003 Annual Research Report
  • [Publications] X.Fu et al.: "Induction of AApoAII Amyloidosis by Various Heterogeneous Amyloid Fibrils"FEBS Letters. (印刷中). (2004)

    • Related Report
      2003 Annual Research Report
  • [Publications] T.Higurashi et al.: "Structural Stability and Solution Structure of Chaperonin GroES Heptamer Studied by Synchrotron Small-Angle X-Ray Scattering"Journal of Molecular Biology. 333・3. 605-620 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] T.Fujii et al.: "Crystal Structure of Thermostable Aspartase from Bacillus sp. YM55-1: Structure-based Exploration of Functional Sites in the Aspartase Family"Journal of Molecular Biology. 328・3. 635-654 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] 河田康志, 田口英樹, 吉田賢右: "シャペロニンGroELの作用機構"蛋白質 核酸 酵素. (印刷中). (2004)

    • Related Report
      2003 Annual Research Report
  • [Publications] 河田 康志: "タンパク質工学:分子シャペロンによるタンパク質の構造形成と品質管理"医学出版. 43-86 (2003)

    • Related Report
      2003 Annual Research Report

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Published: 2003-04-01   Modified: 2016-04-21  

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