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Lipid Biosynthesis in archaea-Exploring its uniqueness and evolutionary position

Research Project

Project/Area Number 15370049
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Functional biochemistry
Research InstitutionTohoku University

Principal Investigator

NISHINO Tokuzo  Tohoku University, Graduate School of Engineering, Professor, 大学院・工学研究科, 教授 (90005827)

Co-Investigator(Kenkyū-buntansha) NAKAYAMA Toru  Tohoku University, Graduate School of Engineering, Associate Professor, 大学院・工学研究科, 助教授 (80268523)
HEMMI Hisashi  Tohoku University, Graduate School of Engineering, Assistant Professor, 大学院・工学研究科, 助手 (60302189)
Project Period (FY) 2003 – 2004
Project Status Completed (Fiscal Year 2004)
Budget Amount *help
¥15,500,000 (Direct Cost: ¥15,500,000)
Fiscal Year 2004: ¥5,200,000 (Direct Cost: ¥5,200,000)
Fiscal Year 2003: ¥10,300,000 (Direct Cost: ¥10,300,000)
Keywordsarchaea / membrane lipid / biosynthesis / evolution / prenyltransferase / Sulfolobus / geranylgeranylglycerol phosphate / geranylgeranyl diphosphate / アーキア / 脂質生合成 / イソプレノイド / エーテル脂質 / プレニルキノン / ドリコール / イソペンテニルニリン酸
Research Abstract

The core structure of membrane lipids of archaea have some unique properties that permit archaea to be distinguished from the others, i.e., bacteria and eukaryotes. (S)-2,3-Di-O-geranylgeranylglyceryl phosphate synthase, which catalyzes the transfer of a geranylgeranyl group from geranylgeranyl diphosphate to (S)-3-O-geranylgeranylglyceryl phosphate, is involved in the biosynthesis of archaeal membrane lipids. Enzymes of the UbiA prenyltransferase family are known to catalyze the transfer of a prenyl group to various acceptors with hydrophobic ring structures in the biosynthesis of respiratory quinones, hemes, chlorophylls, vitamin E, and shikonin. The thermoacidophilic archaeon S.solfataricus was found to encode three homologues of UbiA prenyltransferase in its genome. One of the homologues encoded by SSO0583 was expressed in Escherichia coli, purified, and characterized. Radioassay and mass spectrometry analysis data indicated that the enzyme specifically catalyzes the biosynthesis of (S)-2,3-di-O-geranylgeranylglyceryl phosphate. The fact that the orthologues of the enzyme are encoded in almost all archaeal genomes clearly indicates the importance of their functions. A phylogenetic tree constructed using the amino acid sequences of some typical members of the UbiA prenyltransferase family and their homologues from S.solfataricus suggests that the two other S.solfataricus homologues, excluding the (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase, are involved in the production of respiratory quinone and heme, respectively. We propose here that archaeal prenyltransferases involved in membrane lipid biosynthesis might be prototypes of the protein family and that archaea might have played an important role in the molecular evolution of prenyltransferases.

Report

(3 results)
  • 2004 Annual Research Report   Final Research Report Summary
  • 2003 Annual Research Report
  • Research Products

    (18 results)

All 2005 2004 2003 Other

All Journal Article (15 results) Publications (3 results)

  • [Journal Article] Menaquinone-specific prenyl reductase from the hyperthermophilic archaeon Archaeoglobus fulgidus2005

    • Author(s)
      H.Hemmi, et al.
    • Journal Title

      J.Bacteriol. 187

      Pages: 1937-1944

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Menaquinone-specific prenylreductase from the hyperthermophilic archaeon Archaeglobus fulgidus2005

    • Author(s)
      H.Hemmi et al.
    • Journal Title

      J.Bacteriol. (印刷中)

    • Related Report
      2004 Annual Research Report
  • [Journal Article] (S)-2,3-Di-O-geranylgeranylglyceryl Phosphate Synthase from the Thermoacidophilic Archaeon Sulfolobus Solfataricus : Molecular Cloning and Characterization of a Membrane-intrinsic Prenyltransferase Involved in the Biosynthesis of Archaeal Ether-linked Membrane Lipids2004

    • Author(s)
      H.Hemmi, et al.
    • Journal Title

      J.Biol.Chem. 279

      Pages: 50197-50203

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Catalytic mechanism of type 2 isopentenyl diphosphate : dimethylallyl diphosphate isomerase : verification of a redox role of the flavin cofactor in a reaction with no net redox change2004

    • Author(s)
      H.Hemmi, et al.
    • Journal Title

      Biochem.Biophys.Res.Commun. 322

      Pages: 905-910

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Type 2 isopentenyl diphosphate isomerase from a thermoacidophilic archaeon Sulfolobus shibatae2004

    • Author(s)
      S.Yamashita, et al.
    • Journal Title

      Eur.J.Biochem. 271

      Pages: 1087-1093

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] (S)-2,3-Di-O-geranylgeranylglyceryl Phosphate Synthase from the Thermoacidophilic Archaeon Sulfolobus solfataricus : Molecular Cloning and Characterization of a Membrane-intrinsic Prenyltransferase Involved in the Biosynthesis of Archaeal Ether-linked Membrane Lipids2004

    • Author(s)
      H.Hemmi, et al.
    • Journal Title

      J.Biol.Chem. 279

      Pages: 50197-50203

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Type 2 isopentenyl diphosphate isomerase from a thermoacidophilic archaeon Sulfolohus shibatae2004

    • Author(s)
      S.Yamashita, et al.
    • Journal Title

      Eur.J.Biochem. 271

      Pages: 1087-1093

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] (s)-2,3-Di-O-geranylgeranylglyceryl phosphate synthase from the thermoacidophilic achaeon Sulfolobus solfataricus2004

    • Author(s)
      H.Hemmi et al.
    • Journal Title

      J.Biol.Chem. 279

      Pages: 50197-50203

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Catalytic mechanism of type 2 isopentenyl diphosphate : dimethylallyl diphosphate isomerase2004

    • Author(s)
      H.Hemmi et al.
    • Journal Title

      Biochem.Biophys.Res.Commun. 322

      Pages: 905-910

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Type2 isopentenyl diphosphate isomerase from a themoacidophilic archaeon Sulfolobus shibatae2004

    • Author(s)
      S.Yamashita et al.
    • Journal Title

      Eur.J.Biochem. 271

      Pages: 1087-1093

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Fusion-type lycopene β-cyclase from a thermoacidophilic archaeon Sulfolobus solfataricus2003

    • Author(s)
      H.Hemmi, et al.
    • Journal Title

      Biochem.Biophys.Res.Commun. 305

      Pages: 586-591

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] An alternative mechanism of product chain-length determination in type III geranyl-geranyl diphosphate synthase2003

    • Author(s)
      H.Hemmi, et al.
    • Journal Title

      Eur.J.Biochem. 270

      Pages: 2186-2194

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Isolation and expression of Paracoccus denitrificans decaprenyl diphosphate synthase gene for production of ubiquinone-10 in Escherichia coli2003

    • Author(s)
      S.Takahashi, et al.
    • Journal Title

      Biochem.Eng.J. 16

      Pages: 183-190

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Fusion-type lycopene β-cyclase from a thermoacidophilic archaeon Sulfolobus Solfataricus2003

    • Author(s)
      H.Hemmi, et al.
    • Journal Title

      Biochem.Biophys.Res.Commun. 305

      Pages: 586-591

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] An alternative mechanism of product chain-length determination in type III geranylgeranyl diphosphate synthase2003

    • Author(s)
      H.Hemmi, et al.
    • Journal Title

      Eur.J.Biochem. 270

      Pages: 2186-2194

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Publications] Hemmmi, H. et al.: "Fusion-type lycopene β-cyclase from a thermoacidophilic archaeon Sulfolobus solfataricus"Biochem.Biophys Res.Com. 305(3). 586-591 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Hemmmi, H. et al.: "An alternative mechanism of product chain-length determination in type III geranylgeranyl diphosphate synthase"Eur.J.Biochem.. 270(10). 2186-2194 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Takahashi, S. et al.: "Isolation and expression of Paracoccus denitrificans decaprenyl diphosphate synthase gene for production of ubiquinone -10 in Escherichia coli"Biochem.Eng.J.. 16(2). 183-190 (2003)

    • Related Report
      2003 Annual Research Report

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Published: 2003-04-01   Modified: 2016-04-21  

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