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Analysis of Structure and Function of Human Centromere/kindochore Chromatin

Research Project

Project/Area Number 15370076
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Molecular biology
Research InstitutionNagoya University

Principal Investigator

YODA Kinya  Nagoya University, Bioscience and Biotechnology Center, Associate Professor, 生物機能開発利用研究センター, 助教授 (30126916)

Co-Investigator(Kenkyū-buntansha) OBUSE Chikasihi  Kyoto University, Graduate School of Biostudies, Associate Professor, 大学院・生命科学研究科, 助教授 (00273855)
Project Period (FY) 2003 – 2004
Project Status Completed (Fiscal Year 2004)
Budget Amount *help
¥12,300,000 (Direct Cost: ¥12,300,000)
Fiscal Year 2004: ¥3,500,000 (Direct Cost: ¥3,500,000)
Fiscal Year 2003: ¥8,800,000 (Direct Cost: ¥8,800,000)
Keywordshuman centromere chromatin / anti-CENP-A monoclonal antibody / I-CEN complex / proteomics analysis / siRNA / MgcRacGAP / ASR2A / Rsf-1 / SNF2H remodeling complex / SNF2Hリモデリング複合体 / N-ChIP / 機能解析 / CENP-A / B / C 複合体 / I型αサテライトDNA / クロマチンリモデリング因子 / ポリコーム複合体
Research Abstract

Our Group has been studying about structure and function of the centromere region of human chromosomes in the viewpoint of DNA/protein complex formed by interaction between DNA and proteins. We have elaborated to purify a centromere specific histone H3 variant, CENP-A, and established the method for reconstruction of the nucleosome containing CENP-A instead of histone H3 (CENP-A nucleosome)(ref.6). We have produced highly specific anti-CENP-A monoclonal antibody and this antibody has been supplied to lots of investigators inside and/or outside of this country (ref.1,11-13). We have shown that this antibody was excellent in high specificity not only for immuno-stain of the cells but also for chromatin immuno-precipitation (ref.4). We have developed the method to mildly solubilize the chromatin and isolate the centromere chromatin from interphase nuclei using anti-CENP-A antibody (Native Chromatin Immuno-Precipitation;N-ChIP)(ref.9). The isolated chromatin complex contained all the reported centromere structural proteins, CENP-A,CENP-B,CENP-C,CENP-H,CENP-l/hMis6 and hMis12. Therefore, we call this complex as Interphase CENtromere complex(I-CEN complex). The components of the I-CEN complex have been comprehensively subjected to LC/MS/MS analyses and 40 proteins were detected (ref.9). In collaboration with Dr.Naohito Nozaki, Kanagawa Dental College, we tried to produce the antibodies against 20 proteins using chemically synthesized amino-and/or carboxyl-terminal peptides as antigens. We've got 10 kinds of antibodies and 5 of them are now under analysis ; antibodies against MgcRacGAP,hMKLP-1,ASR2A,Rsf1(XAP8) and SNF2H. To analyze the physiological function of each protein we are now trying RNA-interference-mediated depletion of the proteins. By siRNA transfection we reveal that ASR2A is essential for interaction between kinetochore and microtubule (paper in preparation).

Report

(3 results)
  • 2004 Annual Research Report   Final Research Report Summary
  • 2003 Annual Research Report
  • Research Products

    (37 results)

All 2005 2004 2003 Other

All Journal Article (30 results) Publications (7 results)

  • [Journal Article] Inhibitors of histone deacetylases alter kinetochore assembly by disrupting pericentromeric heterochromatin.2005

    • Author(s)
      Robbins A.R., Jablonski, S.A., Yen, T.J., Yoda, K., et al.
    • Journal Title

      Cell Cycle 4(5)

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Centromere protein H is upregulated in primary human colorectal cancer and ts overexpression induces aneuploidy. Cancer Res2005

    • Author(s)
      Tomonaga, T.,...Ochiai, T., Yoda, K., et al.
    • Journal Title

      Cancer Research 65(11)

      Pages: 4683-4689

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] セントロメアクロマチンの構造と機能:CENP-Aがセントロメア領域を決定する2005

    • Author(s)
      依田欣哉
    • Journal Title

      生化学 77(3)

      Pages: 222-232

    • NAID

      10015548051

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Annual Research Report 2004 Final Research Report Summary
  • [Journal Article] Inhibitors of histone deacetylases alter kinetochore assembly by disrupting pericentromeric heterochromatin.2005

    • Author(s)
      Robbins A.R., Jablonski, S.A., Yen, T.J., Yoda, K., Robey, R., Bates, S.E., Sackett, D.L.
    • Journal Title

      Cell Cycle 4(5)

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Centromere protein H is upregulated in primary human colorectal cancer and its overexpression induces aneuploidy.2005

    • Author(s)
      Tomonaga, T., Matsushita, K., Ishibashi, M., Nezu, M., Shimada, H., Ochiai, T., Yoda.K., Nomura, F.
    • Journal Title

      Cancer Res. 65(11)

      Pages: 4683-4689

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Structure and function of the centromere chromatin : CENP-A defines the centromere region2005

    • Author(s)
      K.Yoda
    • Journal Title

      Seikagaku 77(3)

      Pages: 222-232

    • NAID

      10015548051

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Centromere identity originates in the structure of CENP-A/H4 tetramer itself : a mechanism for aneuploidy.2004

    • Author(s)
      Kinya Yoda, Takeshi Tomonaga
    • Journal Title

      Lancet 364

      Pages: 1022-1024

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Immunological analysis and purification of centromere complex.2004

    • Author(s)
      Kinya Yoda, Satoshi Ando
    • Journal Title

      Methods in Enzymology 375

      Pages: 270-277

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Annual Research Report 2004 Final Research Report Summary
  • [Journal Article] Histone variant CENP-A purification, nucleosome reconstitution.2004

    • Author(s)
      Kinya Yoda, Setsuo Morishita, Keiji Hashimoto
    • Journal Title

      Methods in Enzymology 375

      Pages: 253-269

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Annual Research Report 2004 Final Research Report Summary
  • [Journal Article] Expression and purification of recombinant human histones.2004

    • Author(s)
      Tanaka, Y.,.., Yoda, K., Kurumizaka, H., Yokoyama, S
    • Journal Title

      Methods 33

      Pages: 3-11

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] ヒト染色体セントロメアの構造-間期セントロメア複合体は多数のガン関連遺伝子を含む2004

    • Author(s)
      依田欣哉
    • Journal Title

      医学のあゆみ 208

      Pages: 787-792

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Proteomics Analysis of the Centromere Complex from HeLa Interphase Cells : UV-Damaged DNA Binding Protein 1 (DDB-1) is a component of the CEN-complex, while BMI-1 istransiently colocalized with the centromeric region in interphase.2004

    • Author(s)
      Chikasi Obuse,..Tuneko Okazaki, Kinya Yoda
    • Journal Title

      Gene to cells 9

      Pages: 105-120

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] (Comment) Centromere identity originates in the structure of CENP-A/H4 tetramer itself : a mechanism for aneuploidy.2004

    • Author(s)
      Kinya Yoda, Takeshi Tomonaga
    • Journal Title

      Lancet 364

      Pages: 1022-1024

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Immunological analysis and purification of centromere complex.2004

    • Author(s)
      Kinya Yoda, Satoshi Ando
    • Journal Title

      Methods Enzymol. 375

      Pages: 270-277

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Histone variant CENP-A purification, nucleosome reconstitution.2004

    • Author(s)
      Kinya Yoda, Setsuo Morishita, Keiji Hashimoto
    • Journal Title

      Methods Enzymol. 375

      Pages: 253-269

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Expression and purification of recombinant human histones.2004

    • Author(s)
      Tanaka, Y., Tawaramoto-Sasanuma, M., Kawaguchi, S., Ohta, T., Yoda, Kurumizaka, H., Yokoyama, S.
    • Journal Title

      Methods 33

      Pages: 3-11

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Structure ot the centromere in human chromosomes-I-CEN complex contains many proteins related to cancer.2004

    • Author(s)
      K.Yoda
    • Journal Title

      医学のあゆみ 208

      Pages: 787-792

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Proteomics Analysis of the Centromere Complex from HeLa Interphase Cells : UV-Damaged DNA Binding Protein 1(DDB-1) is a component of the CEN-complex, while BMI-1 is transiently colocalized with the centromeric region in interphase.2004

    • Author(s)
      Chikasi Obuse, Hua Yang, Naohito Nozaki, Shouhei Goto, Tuneko Okazaki, Kinya Yoda
    • Journal Title

      Genes to Cells 9

      Pages: 105-120

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] ヒト染色体セントロメアの構造-間期セントロメアデ複合体は多数のガン関連遺伝子を含む2004

    • Author(s)
      依田欣哉
    • Journal Title

      医学のあゆみ(羊土社) 208

      Pages: 638-643

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Proteomics analysis of the centromere complex from HeLa interphase cells : UV-damaged DNA binding protein 1 (DDB-1) is a component of the CEN-complex, while BMI-1 is transiently co-localized with the centromeric region in interphase2004

    • Author(s)
      Chikasi Obuse, Hua Yang, Kinya Yoda
    • Journal Title

      Gemes to Cells 9

      Pages: 105-120

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Expression and purification of recombinant humans histones.2004

    • Author(s)
      Tanaka, Y., Yoda, K., Kurumizaka, H., Yokoyama, S.
    • Journal Title

      Methods 33

      Pages: 3-11

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Centromere identity originates in the structure of CENP-A/HA tetramer itself : a mechanism for aneuploidy.2004

    • Author(s)
      Kinya Yoda, Takashi Tomonaga
    • Journal Title

      Lancet 364

      Pages: 1022-1024

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Genomic microarray analysis reveals distinct locations for the CenpA bindin domains in three human chromosome 13q32.2003

    • Author(s)
      Alicia Alonso,.., Kinya Yoda, Peter E.Warburton
    • Journal Title

      Human Molecular Genetics 12

      Pages: 2711-2721

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Overexpression and mistargeting of centromere protein-A in human primary colorectal cancer.2003

    • Author(s)
      Takeshi Tomonaga, Kinya Yoda, Fumio Nomura
    • Journal Title

      Cancer Research 63

      Pages: 3511-3516

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Human CENP-I specifies localization of CENP-F, MAD1 and MAD2 to kinetochores and is essential for mitosis.2003

    • Author(s)
      Song-Tao Liu,.., Kinya Yoda, Tim J.Yen
    • Journal Title

      Nature Cell Biology 5

      Pages: 341-345

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Human centromere chromatin protein hMis12, essential for equal segregation, is independent of CENP-A loading pathway.2003

    • Author(s)
      G.Goshima, K.Kiyomitsu, K.Yoda, M.Yanagida
    • Journal Title

      Journal of Cell Biology 160

      Pages: 25-39

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Genomic microarray analysis reveals distinct locations for the CenpA binding domains in three human chromosome 13q32.2003

    • Author(s)
      Alicia Atonso, Radma Mahmood, Shulan Li, Fanny Cheung, Kinya Yoda, Peter E.Warburton
    • Journal Title

      Hum.Molec.Genet. 12

      Pages: 2711-2721

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Overexpression and mistargeting of centromere protein-A in human primary colorectal cancer.2003

    • Author(s)
      Takeshi Tomonaga, Kazuyuki Matsushita, Seiko Yamagucni, Hideaki Shimada, Takenori Ochiai, Kinya Yoda, Fumio Nomura
    • Journal Title

      Cancer Res. 63

      Pages: 3511-3516

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Human CENP-I specifies localization of CENP-F, MAD1 and MAD2 to kinetochores and is essential for mitosis.2003

    • Author(s)
      Song-Tao Liu, James C.Hittte, Sandra A.Jablonski, Michael S.Campbell, Kinya Yoda, Tim J.Yen
    • Journal Title

      Nature Cell Biol. 5

      Pages: 341-345

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Journal Article] Human centromere chromatin protein hMis12, essential for equal segregation, is independent of CENP-A loading pathway.2003

    • Author(s)
      G.Goshima, K.Kiyomitsu, K.Yoda, M.Yanagida
    • Journal Title

      J.Cell Biol. 160

      Pages: 25-39

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2004 Final Research Report Summary
  • [Publications] S.T.Liu, K.Yoda, T.J.Yen: "Human CENP-I specifies localization of CENP-F, MAD1 and MAD2to Kinetochores and essential fo mitosis"Nature Cell Biology. 5. 341-345 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] T.Tomonaga, K.Yoda, F.Nomura: "Overexpression and mistargeting of centromere protein-A in human Primary colorectal cancer"Cancer Research. 63. 3511-3516 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] A.Alonso, K.Yoda, P.E.Warburton: "Genomic microarray analysis reveals distinct locations for the Cenp-A Binding domains in three human chromosome 13q32"Human Molecular Genetics. 12. 2711-2721 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] K.Yoda, S.Ando: "Immunological analysis and purification of centromere complex"Methods in Engymology. 375. 270-277 (2004)

    • Related Report
      2003 Annual Research Report
  • [Publications] K.Yoda, S.Morishita, Hashimoto: "Histone variant CENP-A purification, nucleosome reconstitution"Methods in Engymology. 375. 253-269 (2004)

    • Related Report
      2003 Annual Research Report
  • [Publications] 依田欣哉: "ヒト染色体セントロメアの構造-間期セントロメア複合体は多数のガン関連遺伝子を含む"羊土社、医学のあゆみ. 208. 638-643 (2004)

    • Related Report
      2003 Annual Research Report
  • [Publications] C.Obuse, H.Yang, K.Yoda: "Proteomics analysis of the centromere complex from HeLa interphase cells : UVDDB-1 is a component of the CEN-complex, while BMI-1 is transiently co-localized with the centromeric region in interphase"Genes to cells. Vol.9,No.2. 105-120 (2004)

    • Related Report
      2003 Annual Research Report

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Published: 2003-04-01   Modified: 2016-04-21  

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