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Eco-physiological analysis on hybrid rice productivity using genome information

Research Project

Project/Area Number 15380013
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Crop science/Weed science
Research InstitutionThe University of Tokyo

Principal Investigator

NEMOTO Keisuke  The University of Tokyo, Graduate school of Agricultural and Life Sciences, Professor, 大学院農学生命科学研究科, 教授 (40211461)

Co-Investigator(Kenkyū-buntansha) YAMAGISHI Junko  The University of Tokyo, Graduate school of Agricultural and Life Sciences, Associate Professor, 大学院農学生命科学研究科, 助教授 (60191219)
YAMAGISHI Toru  The University of Tokyo, Graduate school of Agricultural and Life Sciences, Associate Professor, 大学院農学生命科学研究科, 助教授 (50143409)
GOTO Yusuke  Tohoku University, Graduate school of Agricultural Science, Associate Professor, 大学院農学研究科, 助教授 (80122919)
Project Period (FY) 2003 – 2005
Project Status Completed (Fiscal Year 2005)
Budget Amount *help
¥15,200,000 (Direct Cost: ¥15,200,000)
Fiscal Year 2005: ¥4,000,000 (Direct Cost: ¥4,000,000)
Fiscal Year 2004: ¥4,900,000 (Direct Cost: ¥4,900,000)
Fiscal Year 2003: ¥6,300,000 (Direct Cost: ¥6,300,000)
Keywordsrice / quantitative traits / heterosis / epistasis / QTL / 収量性 / 分げつ / ヘテロシス
Research Abstract

Rice (Oryza sativa L.) includes two subspecies, namely ssp. japonica and ssp.indica. Although japonica-indica intersubspecific cross has been very rarely used in the past rice breeding programs, rice breeders have been aware that hybrid plants between japonica x indica cross frequently exhibit notable heterosis in many agronomic traits such as biomass production, stress tolerances, etc. This project was aimed to clarify how these characters are controlled genetically in segregating populations from japonica x indica crosses that show high heterosis. For this purpose, we carried out quantitative trait locus (QTL) analyses using Nekken 2 (lowland japonica) x Gaya (lowland indica) recombinant inbred lines, Kamenoo (lowland japonica) x Dular (rainfed-lowland indica) recombinant inbred lines, and IR36 (lowland indica) x Genjah Wangkal (upland japonica) recombinant inbred lines which were originally developed in our laboratory. We found that gene to gene interactions (epistasis) are the major cause of transgressive segregation in many traits. We also found that linked small QTLs for some traits (eg. tiller bud dormancy and phyllochron) have a multiplicative large effect on their product (e.g. tiller number), suggesting that epistasis is, at least in part, integrated at morphological level.

Report

(4 results)
  • 2005 Annual Research Report   Final Research Report Summary
  • 2004 Annual Research Report
  • 2003 Annual Research Report
  • Research Products

    (22 results)

All 2006 2005 2004 Other

All Journal Article (20 results) Publications (2 results)

  • [Journal Article] Quantitative trait loci for adventitious and lateral roots in rice (Oryza sativa L.)2006

    • Author(s)
      Horii H. et al.
    • Journal Title

      Plant Breeding 125

      Pages: 198-200

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Quantitative trait loci for adventitious and lateral roots in rice (Oryza sativa L.).2006

    • Author(s)
      Horii, H. et al.
    • Journal Title

      Plant Breeding 125

      Pages: 198-200

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] A transposon-induced spontaneous mutation results in low β-amylase content in rice2005

    • Author(s)
      Saika H. et al.
    • Journal Title

      Plant Science 169

      Pages: 239-244

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Quantitative trait loci for rice phyllochron in Lemont x IR36 cross2005

    • Author(s)
      Morita M. et al.
    • Journal Title

      Plant Production Science 8

      Pages: 199-202

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Size and activity of shoot apical meristem as determinants of floret number in rice panicles2005

    • Author(s)
      Mu C.et al.
    • Journal Title

      Plant Production Science 8

      Pages: 51-59

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Tillering behavior of the rice fine culm 1 mutant2005

    • Author(s)
      Goto Y.et al.
    • Journal Title

      Plant Production Science 8

      Pages: 68-70

    • NAID

      110001720830

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] A transposon-induced spontaneous mutation results in low β-amylase content in rice.2005

    • Author(s)
      Saika, H. et al.
    • Journal Title

      Plant Science 169

      Pages: 239-244

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Quantitative trait loci for rice phyllochron in Lemont x IR36 cross.2005

    • Author(s)
      Morita, M. et al.
    • Journal Title

      Plant Production Science 8

      Pages: 199-202

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Size and activity of shoot apical meristem as determinants of floret number in rice panicles.2005

    • Author(s)
      Mu, C.et al.
    • Journal Title

      Plant Production Science 8

      Pages: 51-59

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Tillering behavior of the rice fine culm 1 mutant.2005

    • Author(s)
      Goto, Y. et al.
    • Journal Title

      Plant Production Science 8

      Pages: 68-70

    • NAID

      110001720830

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] A transposon-induced spontaneous mutation results in low β-amylase content in rice.2005

    • Author(s)
      Saika H, et al.
    • Journal Title

      Plant Science 169

      Pages: 239-244

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Flowering response of rice to photoperiod and temperature : a QTL analysis using a phenological model.2005

    • Author(s)
      Nakagawa H, et al.
    • Journal Title

      Theoretical and Applied Genetics 110

      Pages: 778-786

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Comparison of QTLs for early elongation ability between two floating rice cultivars with a different phylogenetic origin.2005

    • Author(s)
      Tang DQ, et al.
    • Journal Title

      Breeding Science 55

      Pages: 1-5

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Quantitative trait loci for rice phyllochron in Lemont x IR36 cross.2005

    • Author(s)
      Morita M, et al.
    • Journal Title

      Plant Production Science 8

      Pages: 199-202

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Tillering behavior of the rice fine culm 1 mutant.2005

    • Author(s)
      Goto Y, Tanabe M, Ishibashi T, Tsutsumi N, Yoshimura A, Nemoto K
    • Journal Title

      Plant Production Science 8

      Pages: 68-70

    • NAID

      110001720830

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Quantitative trait loci for adventitious and lateral roots growth in rice (Oryza sativa L.).2005

    • Author(s)
      Horii H, Nemoto K, Miyamoto N, Harada J
    • Journal Title

      Plant Breeding (印刷中)

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Expression pattern of the coparyl diphosphate synthase gene in developing rice anthers2004

    • Author(s)
      Fukuda A. et al.
    • Journal Title

      Bioscience, Biotechnology and Biochemistry 68

      Pages: 1814-1864

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Expression pattern of the coparyl diphosphate synthase gene in developing rice anthers.2004

    • Author(s)
      Fukuda, A. et al.
    • Journal Title

      Bioscience, Biotechnology and Biochemistry 68

      Pages: 1814-1864

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2005 Final Research Report Summary
  • [Journal Article] Quantitative trait loci for phyllochron and tillering in rice2004

    • Author(s)
      Miyamoto N, Goto Y, Matsui M, Ukai Y, Morita M, Nemoto K
    • Journal Title

      Theoretical and Applied Genetics 109

      Pages: 700-706

    • Related Report
      2004 Annual Research Report
  • [Journal Article] QTLs for branching, floret formation, and pre-flowering floret abortion of rice panicles in a temperate japonica x tropical japonica cross.2004

    • Author(s)
      Yamagishi J, Miyamoto N, Hirotsu S, Laza CR, Nemoto K
    • Journal Title

      Theoretical and Applied Genetics

      Pages: 1555-1561

    • Related Report
      2004 Annual Research Report
  • [Publications] 松井瑞穂, 後藤雄佐, 宮本直子, 守田 誠, 根本圭介: "IR36 x genjah Wangkel組換え近交系を用いたイネ分げつ数のQTL解析"日本作物学会記事. 73(Extra 1)(in press). (2004)

    • Related Report
      2003 Annual Research Report
  • [Publications] N.Miyamoto, Y.Goto, M.Matsui, Y.Ukai, M.Morita, K.Nemoto: "Quantitative trait loci for phyllochron and tillering in rice"Theoretical and Applied Genetics. (in press). (2004)

    • Related Report
      2003 Annual Research Report

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Published: 2003-04-01   Modified: 2016-04-21  

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