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Fundamental studies on development of chemotherapeutics targeting cell surface proteins which are essential for growth in Escherichia coli

Research Project

Project/Area Number 15380056
Research Category

Grant-in-Aid for Scientific Research (B)

Allocation TypeSingle-year Grants
Section一般
Research Field Applied microbiology
Research InstitutionRikkyo University

Principal Investigator

MATSUYAMA Shin-ichi  Rikkyo University, College of Science, Professor, 理学部, 教授 (50183108)

Project Period (FY) 2003 – 2006
Project Status Completed (Fiscal Year 2006)
Budget Amount *help
¥14,800,000 (Direct Cost: ¥14,800,000)
Fiscal Year 2006: ¥2,600,000 (Direct Cost: ¥2,600,000)
Fiscal Year 2005: ¥2,700,000 (Direct Cost: ¥2,700,000)
Fiscal Year 2004: ¥3,300,000 (Direct Cost: ¥3,300,000)
Fiscal Year 2003: ¥6,200,000 (Direct Cost: ¥6,200,000)
KeywordsEscherichia coli / cell surface / outer membrane / inner membrane / lipoprotein / biosynthesis / localization / chemotherapentic
Research Abstract

Fruitful results described in (1)〜(8) were obtained during the period of this research.
(1) The crystal structures of LolA and Lo1B which are involved in the localization of lipoproteins, a major component of the outer membrane, were determined.
(2) We showed that the Lol avoidance signal requires a critical length of negative charge at the second residue, and that phosphatidylethanolamine is important for the Lol avoidance function.
(3) Five Trp residues which are conserved among Lo1B homologs in Gram-negative bacteria were shown to be important for the receptor activity.
(4) We verified the mechanism underlying lipoprotein transfer from LolA to Lo1B is unidirectional and very efficient, but requires no energy input.
(5) The random mutagenesis of 14 residues on LolA revealed crucial roles of the hydrophobic cavity and lid in the binding of lipoproteins and their transfer.
(6) On the basis of the result that some LolD mutations lowered the ATPase activity of Lo1CDE without affecting that of LolD, the LolD motif was found to be critical for functional interplay with Lo1C / LolE.
(7) Using a new screening method which was developed to identify new antibacterial agents targeting the Lol system, we screened for 2 compounds which inhibit the LolA function.
(8) We found that a periplasmic protein, YbiS, is a major transpeptidase involved in the covalent linkage between the Lpp and peptidoglycan, using in vitro assay system. The results described above contribute to development of chemotherapeutics targeting cell surface proteins which are essential for growth in Escherichia coli

Report

(5 results)
  • 2006 Annual Research Report   Final Research Report Summary
  • 2005 Annual Research Report
  • 2004 Annual Research Report
  • 2003 Annual Research Report
  • Research Products

    (44 results)

All 2007 2006 2005 2004 2003 Other

All Journal Article (39 results) Publications (5 results)

  • [Journal Article] A new screening methods to identify inhibitor Lol(localization of lipoproteins)system, a novel antibacterial target2007

    • Author(s)
      Ito, Y.
    • Journal Title

      Microbiol.Immunol. 51

      Pages: 263-270

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Roles of the hydrophobic cavity and lid of LolA in the lipoprotein transfer reaction in Escherichia coli.2006

    • Author(s)
      Watanabe, S.
    • Journal Title

      J. Biol. Chem. 281

      Pages: 3335-3342

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Structure, function and transport of lipoproteins in Escherichia coli.2006

    • Author(s)
      Tokuda, H.
    • Journal Title

      In The Periplasm, (M. Ehrmann (ed)) (ASM press)

      Pages: 67-79

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Genetic analysis of the mode of interplay between an ATPase subunit and membrane subunits of lipoprotein-releasing ABC transporter LolCDE.2006

    • Author(s)
      Ito, Y.
    • Journal Title

      J. Bacteriol. 188

      Pages: 2856-2864

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Roles of the hydrophobic cavity and lid of LolA in the lipoprotein transfer reaction in Escherichia2006

    • Author(s)
      Watanabe, S.
    • Journal Title

      J. Biol. Chem. 281

      Pages: 3335-3342

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Structure, function and transport of lipoproteins in Escherichia2006

    • Author(s)
      Tokuda, H.
    • Journal Title

      In The Periplasm, M. Ehrmann (ed), ASM press

      Pages: 67-79

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Genetic analysis of the mode of interplay between an ATPase subunit and membrane subunits of lipoprotein-releasing ABC transporter Lo1CDE.2006

    • Author(s)
      Ito, Y.
    • Journal Title

      J. Bacteriol. 188

      Pages: 2856-2864

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Structure,function and transport of lipoproteins in Escherichia coli.2006

    • Author(s)
      Tokuda, H.
    • Journal Title

      In The Periplasm,(M.Ehrmann(ed)),(ASM press)

      Pages: 67-79

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Genetic analysis of the mode of interplay between an ATPase subunit and membrane subunits of lipoprotein-releasing ABC transporter LolCDE.2006

    • Author(s)
      Ito, Y.
    • Journal Title

      J.Bacteriol. 188

      Pages: 2856-2864

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Roles of the hydrophobic cavity and lid of LolA in the lipoprotein transfer reaction in Eschericia coli.2006

    • Author(s)
      Watanabe, S.
    • Journal Title

      J.Biol.Chem. 281

      Pages: 3335-3342

    • Related Report
      2006 Annual Research Report
  • [Journal Article] Mechanisms underlying energy-independent transfer of lipoproteins from LolA to LolB, which have similar unclosed β-barrel structures.2005

    • Author(s)
      Taniguchi, N.
    • Journal Title

      J. Biol. Chem. 280

      Pages: 34481-34488

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Disruption of rpmJ encoding ribosomal protein L36 decreases the expression of secY upstream of the spc operon and inhibits protein translocation in Escherichia coli.2005

    • Author(s)
      Ikegami, A.
    • Journal Title

      Biosci. Biotechnol. Biochem. 69

      Pages: 1595-1602

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Disruption of rpmJ encoding ribosomal protein L36decreases the expression of secY upstream of the spc operon and inhibits protein translocation in Escherichia coli..2005

    • Author(s)
      Ikegami, A.
    • Journal Title

      Biotechnol.Biochem. 69

      Pages: 1595-1602

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Mechanisms underlying energy-independent transfer of lipoproteins from LolA to LolB, which have similar unclosed β-barrel structures.2005

    • Author(s)
      Taniguchi, N.
    • Journal Title

      J.Biol.Chem. 280

      Pages: 34481-34488

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Disruption of rpmJ encoding ribosomal protein L36 decreases the expression of secY upstream of the spc operon and inhibits protein translocation in Escherichia coli.2005

    • Author(s)
      Ikegami, A.
    • Journal Title

      Biosci.Biotechnol.Biochem. 69

      Pages: 1595-1602

    • Related Report
      2005 Annual Research Report
  • [Journal Article] Lipoprotein trafficking in Escherichia coli.2004

    • Author(s)
      Narita, S.
    • Journal Title

      Arch. Microbiol 182 (Invited review)

      Pages: 1-6

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Sorting of lipoproteins to the outer membrane in Escherichia coli.2004

    • Author(s)
      Tokuda, H.
    • Journal Title

      Biochim. Biophys. Acta 1693 (Invited review)

      Pages: 5-13

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Effects of lipoprotein overproduction on the induction of DegP (HtrA) involved in quality control in the Escherichia coli periplasm.2004

    • Author(s)
      Miyadai, H.
    • Journal Title

      J. Biol. Chem. 279

      Pages: 39807-39813

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] argeted mutagenesis of five conserved tryptophan residues of LolB involved in membrane localization of Escherichia coli lipoproteins.2004

    • Author(s)
      Wada, R.
    • Journal Title

      Biochim. Biophys. Ress. Commun. 323

      Pages: 1069-1074

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] (Invited review) Lipoprotein trafficking in Escherichia coli.2004

    • Author(s)
      Narita, S.
    • Journal Title

      ch. Micorbiol. 182

      Pages: 1-6

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] (Invited review) Sorting of lipoproteins to the outer membrane in E. coli.2004

    • Author(s)
      Tokuda, H.
    • Journal Title

      Biochim. Biophys. Acta. 1693

      Pages: 5-13

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Effects of lipoprotein overproduction on the induction of DegP (HtrA) involved in quality control in the Escherichia coli liperiplasm.2004

    • Author(s)
      Miyadai, H.
    • Journal Title

      J. Biol. Chem. 279

      Pages: 39807-39813

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Targeted mutagenesis of five conserved tryptophan residues of Lo1B involved in membrane localization of Escherichia colilipoproteins.2004

    • Author(s)
      Wada, R.
    • Journal Title

      Biochim. Biophys. Ress. Commun. 323

      Pages: 1069-1074

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Mechanisms underlying energy-independent transfer of lipoproteins from LolA to Lo1B, which have similar unclosed β-barrel structures.2004

    • Author(s)
      Taniguchi N.
    • Journal Title

      J. Biol. Chem. 280

      Pages: 34481-34488

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Targeted mutagenesis of five conserved tryptophan residues of LolB involved in membrane localization of Escherichia coli lipoprotein2004

    • Author(s)
      Wada, R
    • Journal Title

      Biochim.Biophys.Ress.Commun. 323

      Pages: 1069-1074

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Effects of lipoprotein overproduction on the induction of DegP(HtrA) involved in quarity control in the Escherichia coli periplasm.2004

    • Author(s)
      Miyadai, H
    • Journal Title

      J.Biol.Chem. 279

      Pages: 39807-39813

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Sorting of lipoproteins to the outer membrane in Escherichia coli2004

    • Author(s)
      Tokuda, H
    • Journal Title

      Biochim.Biophys.Acta 1693

      Pages: 5-13

    • Related Report
      2004 Annual Research Report
  • [Journal Article] Lipoprotein trafficking in Escherichia coli2004

    • Author(s)
      Narita, S
    • Journal Title

      Arch.Microbiol. 182

      Pages: 1-6

    • Related Report
      2004 Annual Research Report
  • [Journal Article] 外膜蛋白質の輸送2004

    • Author(s)
      松山伸一
    • Journal Title

      蛋白質・核酸・酵素 49

      Pages: 965-966

    • Related Report
      2004 Annual Research Report
  • [Journal Article] リポ蛋白質の選択的局在化機構2004

    • Author(s)
      金丸京子
    • Journal Title

      蛋白質・核酸・酵素 49

      Pages: 961-964

    • Related Report
      2004 Annual Research Report
  • [Journal Article] A mutation in the membrane subunit of an ABC transporter LolCDE complex causing outer membrane localization of lipoproteins against their inner membrane-specific signals.2003

    • Author(s)
      Narita, S.
    • Journal Title

      Mol. Microbiol. 49

      Pages: 167-177

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Crystallization and preliminary crystallographic study of the outer membrane lipoprotein receptor LolB, a member of the lipoprotein localization factors.2003

    • Author(s)
      Takeda, K.
    • Journal Title

      Acta Cryst. D59

      Pages: 1224-1226

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] A practical phasing procedure of MAD method without the aid of XAFS measurements : successful solution in the structure determination of the outer membrane lipoprotein carrier LolA.2003

    • Author(s)
      Takeda, K.
    • Journal Title

      Acta Cryst. D59

      Pages: 1440-1446

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Crystal Structures of Bacterial Lipoprotein Localization Factors, LolA and LolB.2003

    • Author(s)
      Takeda, K.
    • Journal Title

      EMBO J. 22

      Pages: 3199-3209

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Mechanism underlying the inner membrane retention of E.coli lipoproteins caused by Lol avoidance signals.2003

    • Author(s)
      Hara, T.
    • Journal Title

      J. Biol. Chem. 278

      Pages: 40408-40414

    • Description
      「研究成果報告書概要(和文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] A mutation in the membrane subunit of an ABC transporter Lo1CDE complex causing outer membrane localization of lipoproteins against their inner membrane-specific signals.2003

    • Author(s)
      Narita, S.
    • Journal Title

      Mol. Microbiol. 49

      Pages: 167-177

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Crystallization and preliminary crystallographic study of the outer membrane lipoprotein receptor Lo1B, a member of the lipoprotein localization factors.2003

    • Author(s)
      Takeda, K.
    • Journal Title

      Acta Cryst. D59

      Pages: 1224-1226

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] A practical phasing procedure of MAD method without the aid of XAFS measurements : successful solution in the structure determination of the outer membrane lipoprotein carrier LolA.2003

    • Author(s)
      Takeda, K.
    • Journal Title

      cta Cryst. D59

      Pages: 1440-1446

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Journal Article] Crystal Structures of Bacterial Lipoprotein Localization Factors, LolA and Lo1B.2003

    • Author(s)
      Takeda, K.
    • Journal Title

      EMBO J. 22

      Pages: 3199-3209

    • Description
      「研究成果報告書概要(欧文)」より
    • Related Report
      2006 Final Research Report Summary
  • [Publications] Narita, S: "A Mutation in the membrane subunit of an ABC transporter LolCDE complex causing outer membrane localization of lipoproteins against their inner membrane-specificsignals"Mol.Microbiol.. 49. 167-177 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Takeda, K.: "Crystallization and preliminary crystallographic study of the outer membrane lipoprotein receptor LolB, a member of the lipoprotein localization factor"Acta.Cryst.. D59. 1224-1226 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Takeda, K.: "A practical phasing procedure of MAD method without the aid XAFS measurements"Acta.Cryst.. D59. 1440-1446 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Takeda, K.: "Crystal structures of bacterial lipoprotein localization factors, LolA and LolB"EMBO J.. 22. 3199-3209 (2003)

    • Related Report
      2003 Annual Research Report
  • [Publications] Hara, T.: "Mechanism underlying the inner membrane retention of E.coli lipoproteins caused by Lol avoidance signals"J.Biol.Chem.. 278. 40408-40414 (2003)

    • Related Report
      2003 Annual Research Report

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Published: 2003-04-01   Modified: 2016-04-21  

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